University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Subpallidal region right


Abbreviation
SuPa
Color       
Superior regionsGlobus pallidus

SynonymsAbbr.Language
Subpallidal regionSuPaEng

SubregionsSide
Caudal subpallidal regionright

Output to

NameSideAbbr.WeightDetails
Peduncularpontine nucleuscontraPPN1
Nucleus of the horizontal limb of the diagonal bandcontraHDB0
Central grayipsiCG1
Periaqueductal grayipsiPAG-0.5
Central tegmental fieldipsiTGAC1
Peduncularpontine nucleusipsiPPN3
Substantia nigra A9ipsiSN0
Substantia nigra compact partipsiSNC-0.5
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA1
Retrorubral nucleusipsiRR-0.5
Laterodorsal tegmental nucleusipsiLDTg0
Locus coeruleusipsiLC0
Cuneiforme nucleusipsiCnF0.5
Parabrachial nucleusipsiPB1
Raphe nucleiipsiRAN1
Central raphe nucleusipsiCRN-0.5
Endopiriform systemipsiEnN3
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS1
Substantia innominataipsiSI1
Tuberomammillary nucleusipsiTuM1
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic nucleusipsiLHN1
Posterior hypothalamic areaipsiPHA-0.5
Medial hypothalamic groupipsiMHYPOg1
Supramammillar nucleusipsiSuM1
Central medial thalamic nucleusipsiCM2
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh2
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe2
Zona incertaipsiZI-0.5
Lateral habenular nucleusipsiLHb0
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB1
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe1
Cortex amygdala transition zoneipsiCxA3
Anterior cortical amygdaloid nucleusipsiACo3
Medial amygdaloid nucleusipsiMe1
Medial globus pallidusipsiMGP-0.5
Ventral pallidumipsiVP0
Accumbens nucleusipsiAc1
Rostral pole of the accumbens nucleusipsiAcbRP1
Accumbens nucleus dorsocaudal partipsiAcDC1
Caudate putamenipsiCPu0
Subthalamic nucleusipsiSTh0
HippocampusipsiHIPP0
Entorhinal cortexipsiEnt3
Piriform cortexipsiPir3
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Agranular insular cortexipsiAI1
Perirhinal cortexipsiA351
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO1
Ventrolateral orbital areaipsiVLO1
Anterior olfactory nucleusipsiAON3
Olfactory tubercleipsiTuO1
Lateral septal nucleusipsiLS2

Input from

NameSideAbbr.WeightDetails
Nucleus of the horizontal limb of the diagonal bandcontraHDB2
Central grayipsiCG1
Central tegmental fieldipsiTGAC1
Substantia nigra A9ipsiSN1
Ventral tegmental area A10ipsiVTA2
Laterodorsal tegmental nucleusipsiLDTg2
Locus coeruleusipsiLC2
Parabrachial nucleusipsiPB2
Raphe nucleiipsiRAN2
Endopiriform systemipsiEnN3
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS1
Substantia innominataipsiSI2
Tuberomammillary nucleusipsiTuM2
Lateral hypothalamic nucleusipsiLHN2
Medial hypothalamic groupipsiMHYPOg1
Supramammillar nucleusipsiSuM2
Central medial thalamic nucleusipsiCM1
Parafascicular thalamic nucleusipsiPF1
Rhomboid thalamic nucleusipsiRh1
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV1
Reuniens thalamic nucleusipsiRe1
Lateral habenular nucleusipsiLHb0
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB1
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe1
Cortex amygdala transition zoneipsiCxA3
Anterior cortical amygdaloid nucleusipsiACo3
Medial amygdaloid nucleusipsiMe1
Ventral pallidumipsiVP2
Accumbens nucleusipsiAc2
Caudate putamenipsiCPu0
Subthalamic nucleusipsiSTh0
HippocampusipsiHIPP0
Entorhinal cortexipsiEnt3
Piriform cortexipsiPir3
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL2
Agranular insular cortexipsiAI1
Perirhinal cortexipsiA351
Lateral orbital cortexipsiLO3
Medial orbital cortexipsiMO3
Ventrolateral orbital areaipsiVLO3
Anterior olfactory nucleusipsiAON3
Olfactory tubercleipsiTuO3
Lateral septal nucleusipsiLS2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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