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Rat connectome



Spinal cord layer 2 S1 right


Abbreviation
SCL2S1
Color       
Superior regionsSuperficial dorsal horn S1

SynonymsAbbr.Language
Spinal cord layer 2 S1SCL2S1Eng

SubregionsSide
Spinal cord layer 2 inner part S1right
Spinal cord layer 2 outer part S1right

Output to

NameSideAbbr.WeightDetails
MesencephaloncontraMEC0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG1
Ventrolateral periaqueductal graycontraVLPAG1
Laterodorsal tegmental nucleuscontraLDTg0
Locus coeruleuscontraLC0.5
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB-0.5
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL0
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus medialcontraPBnMe0.5
Parabrachial nucleus superior lateralcontraPBSL0
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL1
Nucleus of the solitary tractcontraSol1
Caudal ventrolateral medullacontraCVLM3
A1 noradrenergic cellscontraA13
Lateral hypothalamic areacontraLH4
Medial division of the hypothalamuscontraMdH4
Posterior hypothalamic areacontraPHA1
ThalamuscontraT3
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Ventrobasal complexcontraVB0.5
Ventral posterolateral thalamic nucleuscontraVPL0.5
Ventral posteromedial thalamic nucleuscontraVPM0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Ventral horn C1contraVHC11
Cervical segment 2contraCS20
Ventral horn C2contraVHC21
Cervical segment 3contraCS30
Ventral horn C3contraVHC31
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Thoracal segment 2contraT20
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 6contraT60
Thoracal segment 7contraT70
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 12contraT120
Thoracal segment 13contraT130
Lumbar segment 1contraL10
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 4contraL40
Area X L4contraSCL10L41
Spinal cord layer 8 L4contraSCL8L41
Lumbar segment 6contraL60
Sacral segment 1contraSa10
Sacral segment 2contraSa20
Sacral segment 3contraSa30
Sacral segment 4contraSa40
Periaqueductal grayipsiPAG0.5
Lateral periaqueductal grayipsiLPAG2
Ventrolateral periaqueductal grayipsiVLPAG2
Superior colliculus deep layersipsiSCd1.5
Laterodorsal tegmental nucleusipsiLDTg0
Locus coeruleusipsiLC1
Parabrachial nucleusipsiPB2
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL0
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL1
Subnucleus reticularis dorsalisipsiSRD1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract medial partipsiSolM-0.5
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM0.5
Rostral ventrolateral medullaipsiRVLM1
A1 noradrenergic cellsipsiA13
GracileipsiGra1
Lateral hypothalamic areaipsiLH3
Medial division of the hypothalamusipsiMdH3
Posterior hypothalamic areaipsiPHA1
ThalamusipsiT1
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventrobasal complexipsiVB0.5
Ventral posterolateral thalamic nucleusipsiVPL0.5
Ventral posteromedial thalamic nucleusipsiVPM0.5
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS11
Ventral horn C1ipsiVHC10.5
Cervical segment 2ipsiCS21
Ventral horn C2ipsiVHC20.5
Cervical segment 3ipsiCS31
Ventral horn C3ipsiVHC30.5
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Area X L4ipsiSCL10L41
Spinal cord layer 8 L4ipsiSCL8L41
Lumbar segment 5ipsiL51
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa21
Interneuron groups of layer 9 S2ipsiiGL9S2-0.5
Motoneuron groups of layer 9 S2ipsiMGL9S2-0.5
Sacral segment 3ipsiSa31
Interneuron groups of layer 9 S3ipsiiGL9S3-0.5
Motoneuron groups of layer 9 S3ipsiMGL9S3-0.5
Sacral segment 4ipsiSa41
StomachipsiOrgsStomS-1
Biceps femoris musclecontraMuscBF1
Biceps femoris muscleipsiMuscBF1
External urethral sphincter muscleipsiMuscEUS-0.5
Ischiocavernosus muscleipsiMuscicav-10
ClitorisipsiOrgCLi-0.5
CervixipsiOrgUTC2

Input from

NameSideAbbr.WeightDetails
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC0.5
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Somatomotoric regions layer 5contraSMRL51
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Dorsal root ganglion S1contraDRGS10.5
Central grayipsiCG1
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Rostral part of the ventromedial medulla oblongataipsiRMeObvm0
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regions layer 5ipsiSMRL51
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL4-0.5
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L6ipsiDRGL6-0.5
Dorsal root ganglion S1ipsiDRGS10.5
Sciatic nerveipsisci-0.5
Pudendal nerveipsipude-0.5
Ventral branch of the pudendal nerveipsipudeVb3
Dorsal branch of the pudendal nerveipsipudedb3
Urinary bladdercontraOrgUrBLa-0.5
Gastrocnemius muscleipsiMuscGC-0.5
Urinary bladderipsiOrgUrBLa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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