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Rat connectome



Nucleus paraventricularis [Periventricular zone anterior region] left


Abbreviation
PaPAR
Color       
Superior regionsPeriventricular zone

SynonymsAbbr.Language
Nucleus paraventricularis [Periventricular zone anterior region]PaPAR 
Filiformis nucleus  
Nucleus hypothalamicus magnocellularis  
Nucleus periventricularis juxtatrigonalis  
Nucleus dorsomedialis posterior hypothalamicus magnocellularis  
Nucleus paraventricularis [Medial zone anterior region]  
Nucleus paraventricularis [Periventricular zone anterior region]Pa 
Paraventricular nucleus of the hypothalamus  
Periventricular nucleiPVN 
Nucleus paraventricularisPAVHLat
Nucleus filiformis  
Paraventricular nucleus of hypothalamusPV 
Paraventricular periventricular nucleus  
Nucleus paraventricularis hypothalami Lat
Periventricular part of the paraventricular hypothalamic nucleus Eng
Paraventricular hypothalamic nucleusPVHEng
Paraventricular hypothalamic nucleus  
Hypothalamic paraventricular nucleusPVN 

SubregionsSide
Dorsomedial paraventricular hypothalamic nucleusleft
Paraventricular hypothalamic nucleus caudal partleft
Paraventricular hypothalamic nucleus descending divisionleft
Paraventricular hypothalamic nucleus dorsal cap [Periventricular zone anterior region]left
Nucleus paraventricularis magnocellular partleft
Nucleus paraventricularis parvocellular partleft
Paraventricular hypothalamic nucleus dorsal partleft
Paraventricular hypothalamic nucleus lateral partleft
Paraventricular hypothalamic nucleus neuroendocrine divisionleft
Paraventricular hypothalamic nucleus perifornical partleft
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]left
Paraventricular hypothalamic nucleus subparaventricular zoneleft
Paraventricular hypothalamic nucleus suprafornical partleft
Paraventricular hypothalamic nucleus surrounding area [Periventricular zone anterior region]left
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]left
Ventrolateral paraventricular hypothalamic nucleusleft
Nucleus paraventricularis rostral caudal levelleft
Anterior paraventricular nucleusleft
Nucleus paraventricularis rostral partleft

Output to

NameSideAbbr.WeightDetails
Dorsal periaqueductal grayipsiDPAG-0.5
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Periaqueductal gray rostral partipsiPAGR-0.5
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Pontine sublaterodorsal nucleusipsiPsLdn0.5
Parabrachial nucleusipsiPB2
Lateral parabrachial nucleusipsiLPB3
Gigantocellular reticular nucleus alpha partipsiGiA0.5
Parvicellular reticular nucleusipsiPCRt1
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract intermediate partipsiSolIM3
Parasolitary nucleusipsiPSol3
Dorsal motor nucleus of vagusipsi103
Dorsal raphe nucleusipsiDR1
Midline apneic siteipsiMAS2
Raphe magnus nucleus caudal partipsiRMgc0.5
Raphe magnus nucleus rostral partipsiRMgR0.5
Raphe pallidus nucleusipsiRPa2
Ventral lateral medulla oblongataipsiMVL2
Caudal ventrolateral medulla lateral partipsiCVLMl3
Lateralmost part of the caudal ventrolateral medullaipsiCVLMLmo3
Rostral ventrolateral medullaipsiRVLM3
A1 noradrenergic cellsipsiA11
Gracile nucleus principal partipsiGr3
Dorsal medulla oblongataipsiDMe2
Paragigantocellular reticular nucleusipsiPGi3
Lateral paragigantocellular nucleusipsiLPGi2
Retrotrapezoid nucleusipsiRTN3
Median eminenceipsiME3
Substantia innominata ventral partipsiSIV1
Lateral preoptic areaipsiLPO-0.5
Ventrolateral subdivision of the medial preoptic areaipsiMPAVL-0.5
Medial preoptic nucleusipsiMPO-0.5
Median preoptic nucleusipsiMnPO3
Ventrolateral preoptic nucleusipsiVLPO3
Lateral zoneipsiLHA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Tuberal areaipsiTA-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Nucleus paraventricularis magnocellular partipsiPaMa-0.5
Nucleus paraventricularis parvocellular partipsiPaPaP-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Periventricular hypothalamic nucleusipsiPe-3
Suprachiasmatic nucleusipsiSCh-3
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Supraoptic nucleus dorsal partipsiSOd3
Supraoptic nucleus rostral partipsiSOr3
Midline group of the dorsal thalamusipsiMTN-1
Paraventricular thalamic nucleusipsiPV1
Posterior lobe of pituitaryipsiPPit-0.5
Basal nucleusipsiBnc3
Accessory basal nucleusipsiAB3
Lateral amygdaloid nucleusipsiLA3
Bed nucleus of the stria terminalis intermediate divisionipsiBSTI-0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Central amygdaloid nucleusipsiCe3
Anterodorsal partipsiCeMad-0.5
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Medial division of the sublenticular extended amygdalaipsiSLEAm-0.5
Amygdalopiriform transition areaipsiAPir-0.5
Anterior amygdaloid areaipsiAA-0.5
Anterior cortical amygdaloid nucleusipsiACo3
Posterolateral cortical nucleusipsiPLCo-0.5
Medial amygdaloid nucleusipsiMe2
Amygdalohippocampal areaipsiAHi2
Anterior cingulate cortexipsiACC2
Lateral parietal association cortexipsiLPtA3
Medial parietal association cortexipsiMPtA2
Lateral septal nucleusipsiLS-0.5
Intermediolateral cell columnipsiIML2
Cervical segment 7ipsiCS7-1
Cervical segment 8ipsiCS83
Thoracal segmentsipsiTSeg-0.5
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT21
Intermediolateral cell column T2ipsiIMLT2-0.5
Intermediolateral cell column T3ipsiIMLT3-0.5
Intermediolateral cell column T7ipsiIMLT7-0.5
Intermediolateral cell column T8ipsiIMLT8-0.5
Intermediolateral cell column T9ipsiIMLT9-0.5
Thoracal segment 11ipsiT11-0.5
Intermediolateral cell column T11ipsiIMLT11-0.5
Thoracal segment 12ipsiT12-0.5
Intermediolateral cell column T12ipsiIMLT12-0.5
Thoracal segment 13ipsiT13-0.5
Intermediolateral cell column T13ipsiIMLT13-0.5
Lumbar segment 1ipsiL1-0.5
Intermediolateral cell column L1ipsiIMLL1-0.5
Lumbar segment 2ipsiL2-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Pontine sublaterodorsal nucleuscontraPsLdn0.5
Spinal trigeminal nucleus caudal partcontraSp5C-0.5
Nucleus of the solitary tract intermediate partcontraSolIM3
Parasolitary nucleuscontraPSol3
Midline apneic sitecontraMAS2
Raphe pallidus nucleuscontraRPa1
Ventral lateral medulla oblongatacontraMVL1
Rostral ventrolateral medullacontraRVLM3
Gracile nucleus principal partcontraGr3
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi0.5
Retrotrapezoid nucleuscontraRTN1
Median eminencecontraME-0.5
Nucleus paraventricularis [Periventricular zone anterior region]contraPaPAR-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Supraoptic nucleus dorsal partcontraSOd-0.5
Cervical segment 7contraCS7-1
Cervical oesophagusipsiOrgsOesC2
Gastrocnemius muscleipsiMuscGC2
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10
Bulbocavernosus musclecontraMuscBCV-10
Ischiocavernosus musclecontraMuscicav-10

Input from

NameSideAbbr.WeightDetails
Medial paralemniscal nucleusipsiMPL1
Periaqueductal grayipsiPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG3
Commissural nucleus of the inferior colliculusipsiCom0.5
Peduncularpontine nucleusipsiPPN1
Laterodorsal tegmental nucleusipsiLDTg1
Pedunculopontine tegmental nucleus pars compactaipsiPPNC0.5
A5 noradrenaline cellsipsiA51
Locus coeruleusipsiLC3
Prepositus nucleusipsiPr2
Mesencephalic reticular formationipsiMRF-3
Cuneiforme nucleusipsiCnF-0.5
Parabrachial nucleusipsiPB2
Lateral parabrachial nucleusipsiLPB3
Dorsal part of the lateral parabrachial nucleus external partipsiDLPBE-0.5
Lateral parabrachial nucleus rostral partipsiLPBr1
Parabrachial nucleus rostral partipsiPBro1
Parabrachial nucleus superior lateralipsiPBSL-0.5
Lateral reticular nucleusipsiLRt1
Mid-lateral aspects of the reticular formationipsiLRtmi2
Medullary reticular nucleus dorsal partipsiMdDd2
C1 adrenaline cellsipsiC14
Area postremaipsiAP3
Cochlear nucleusipsiCON2
Spinal vestibular nucleusipsiSpVe1
Vestibular nucleiipsiVnc0
Superior vestibular nucleusipsiSuVe2
Medial vestibular nucleusipsiMVe3
Lateral vestibular nucleusipsiLVe0
Nucleus of the solitary tractipsiSol3
11 beta hydroxysteroiddehydrogenase type-2 cellsipsiSolHSD21
Nucleus of the solitary tract caudal partipsiSolca3
Nucleus of the solitary tract medial partipsiSolM2
Nucleus of the solitary tract subpostremal partipsiSolsp1
Around the nucleus of the solitary tractipsiSolAr-0.5
Dorsal motor nucleus of vagus dorsolateral edgeipsi10DLe-0.5
Dorsal raphe nucleusipsiDR0
Ventral lateral medulla oblongataipsiMVL-0.5
Caudal ventrolateral medullaipsiCVLM-0.5
Rostral ventrolateral medullaipsiRVLM4
Ventral lateral medulla oblongata at the level of the area postremaipsiMVLAP2
A1 noradrenergic cellsipsiA1-0.5
Dorsomedial rostral medulla oblongataipsiMeObdmr0.5
Lateral paragigantocellular nucleusipsiLPGi1
Ventromedial medulla oblongataipsiMeObvm-2
Lamina terminalisipsiLTer-0.5
Medial septal nucleusipsiMS1
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO2
Ventromedial preoptic nucleusipsiVMPO1
Vascular organ of the lamina terminalisipsiVOLT1.5
HypothalamusipsiHYPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp2
Lateral zoneipsiLHA3
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area anterior partipsiLHAa-0.5
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm1
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0
Lateral hypothalamic area perifornical partipsiPFx2
Lateral hypothalamic area posterior partipsiLHAp1
Lateral hypothalamic area ventrolateral partipsiLHvL1.5
Ventral segment of the tuberal region of lateral hypothalamusipsiTuLHv1
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM-0.5
Anterior hypothalamic areaipsiAHA2.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe3
Anterior hypothalamic nucleusipsiAHn-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Ventral sections of the posterior dorsomedial nucleusipsiDMHpve3
Posterior hypothalamic areaipsiPHA-0.5
Tuberal areaipsiTA3
Anterior periventricular nucleusipsiPeA0
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo-0.5
Periventricular hypothalamic nucleusipsiPe-3
Suprachiasmatic nucleusipsiSCh3
Suprachiasmatic nucleus dorsal divisionipsiSChd3
Suprachiasmatic nucleus ventral divisionipsiSChv-2
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventral partipsiPMV2.5
Supramammillar nucleusipsiSuM-0.5
Basal retrochiasmatic areaipsiBRCh2
ThalamusipsiT1
Paraventricular thalamic nucleusipsiPV-0.5
Reuniens thalamic nucleusipsiRe2
Subfornical organipsiSFO-0.5
RetinaipsiRET2
Accessory basal nucleusipsiAB2
Anterior basomedial nucleusipsiBMA0.5
Posterior basomedial nucleusipsiBMP0.5
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior divisionipsiBSTA-0.5
Bed nucleus of the stria terminalis anterior division anterolateral nucleusipsiBSTal0.5
Bed nucleus of the stria terminalis anterior division anteroventral nucleusipsiBSTav0.5
Bed nucleus of the stria terminalis anterior division dorsolateral nucleusipsiBSTAdl0.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm3
Bed nucleus of the stria terminalis anterior division subcommissural partipsiBSTAsc0.5
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM2
Bed nucleus of the stria terminalis fusiform partipsiFu3
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc0.5
Bed nucleus of the stria terminalis oval nucleusipsiBSTo0
Bed nucleus of the stria terminalis rhomboid nucleusipsiBSTrh-0.5
Bed nucleus of the stria terminalis anterior division anterodorsal areaipsiBSTAad0
Bed nucleus of the stria terminalis anterior division anterodorsal area central coreipsiBSTcc0
Bed nucleus of the stria terminalis juxtacapsular partipsiBSTj0
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA-0.5
Bed nucleus of the stria terminalis posterior divisionipsiBSTP-0.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd2
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif-0.5
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV-0.5
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt-0.5
Central amygdaloid nucleusipsiCe3
Anterior cortical amygdaloid nucleusipsiACo2
Medial amygdaloid nucleusipsiMe3
Medial amygdaloid nucleus posterodorsal partipsiMePD-0.5
Amygdalohippocampal areaipsiAHi2
Subiculum ventral partipsiSv0.5
Ventral subiculum rostral part layersipsiSvRL3
Lateral entorhinal cortexipsiLEnt3
Anterior cingulate cortexipsiACC1
Prelimbic cortexipsiPrL1.5
Prelimbic cortex caudal partipsiPrLc1
Prelimbic cortex rostral partipsiPrLr2
Infralimbic cortexipsiIL2
Insular cortexipsiICX-0.5
Agranular insular cortex dorsal partipsiAID1
Dorsolateral orbital cortexipsiDLO1
Intergeniculate leafipsiIGL-2
Lateral septal nucleusipsiLS-0.5
Locus coeruleuscontraLC1
Medullary reticular nucleus dorsal partcontraMdDd2
Nucleus of the solitary tractcontraSol3
Ventral lateral medulla oblongatacontraMVL0.5
A1 noradrenergic cellscontraA1-0.5
Ventromedial medulla oblongatacontraMeObvm-2
Ventromedial preoptic nucleuscontraVMPO1
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe1
Nucleus paraventricularis [Periventricular zone anterior region]contraPaPAR-0.5
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo3
Suprachiasmatic nucleuscontraSCh-0.5
RetinacontraRET-0.5
Bed nucleus of the stria terminalis anterior medial partcontraBSTAM0.5
Bed nucleus of the stria terminalis fusiform partcontraFu0.5
Central amygdaloid nucleuscontraCe-1
Ventral subiculum rostral part layerscontraSvRL2
Lateral entorhinal cortexcontraLEnt2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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