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Rat connectome



Periaqueductal gray dorsal part left


Abbreviation
PAGd
Color       
Superior regionsPeriaqueductal gray

SynonymsAbbr.Language
Periaqueductal gray dorsal partPAGdEng
Dorsal aspects of periaquaeductal grey  
Dorsal subdivision of the periaqueductal gray Eng

SubregionsSide
Periaqueductal gray dorsal halfleft
Periaqueductal gray rostral dorsal partleft

Output to

NameSideAbbr.WeightDetails
Midbrain extrapyramidal areaipsiMEA2
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area rostral ventromedial partipsiVTARVM-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC3
Pontine tegmental fieldipsiPTF2
Deep mesencephalic nucleus intermediateipsiDpMei2
Deep mesencephalic nucleus lateral partipsiDpMeL2
Deep mesencephalic nucleus medial partipsiDpMeM2
Parabrachial nucleusipsiPB1
Gigantocellular reticular nucleus alpha partipsiGiA3
Lateral reticular nucleusipsiLRt3
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleusipsiSp5nc0.5
Raphe magnus nucleusipsiRMg1
Raphe magnus nucleus caudal partipsiRMgc1
Raphe magnus nucleus rostral partipsiRMgR2
Raphe pallidus nucleusipsiRPa0.5
Paragigantocellular reticular nucleusipsiPGi2
Medial preoptic areaipsiMPA2.5
Medial preoptic area central partipsiMPAce2
Medial preoptic area lateral partipsiMPAL2
Medial preoptic nucleusipsiMPO2.5
Medial preoptic nucleus medial partipsiMPOM2
Median preoptic nucleusipsiMnPO2.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd1
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc2
A8 dopamine cells retrorubral groupipsiRRF3
Parafascicular thalamic nucleusipsiPF2
Mediodorsal thalamic nucleusipsiMD1
Submedius thalamic nucleusipsiSub1
Paratenial thalamic nucleusipsiPT1
Reuniens thalamic nucleusipsiRe1
Lateral posterior thalamic nucleusipsiLP1
Olfactory bulb A16ipsiMOB0
Olfactory cortexipsiOcx0
Anterior olfactory cortexipsiOCOA0
Midbrain extrapyramidal areacontraMEA0.5
Ventral tegmental area rostral ventromedial partcontraVTARVM-0.5
Pedunculopontine tegmental nucleuscontraPPTg0.5
Barringtons nucleuscontraBar0.5
Pontine tegmental fieldcontraPTF1
Parabrachial nucleuscontraPB0
Raphe magnus nucleuscontraRMg-0.5
Medial preoptic area central partcontraMPAce2
Medial preoptic area lateral partcontraMPAL2
Medial preoptic nucleus medial partcontraMPOM2
Ventromedial hypothalamic nucleuscontraVMH1
Arcuate nucleuscontraArc1
A8 dopamine cells retrorubral groupcontraRRF1
Parafascicular thalamic nucleuscontraPF1

Input from

NameSideAbbr.WeightDetails
A5 noradrenaline cellsipsiA5-0.5
Nucleus incertus pars compactaipsiNIc0.5
Nucleus incertus pars dissipataipsiNId0.5
Medial preoptic areaipsiMPA3
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO3
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar1.5
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR1.5
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM3
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm2
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd3
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv3
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0.5
Dorsal hypothalamic areaipsiDA2
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL2
Paraventricular hypothalamic nucleusipsiPa0.5
Premammillary nucleus dorsal partipsiPMD1
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus lateral divisionipsiCeL1
Cervical segment 1ipsiCS10.5
Spinal cord layer 5 C1ipsiSCL5C10.5
Cervical segment 2ipsiCS20.5
Spinal cord layer 5 C2ipsiSCL5C20.5
Cervical segment 3ipsiCS30.5
Spinal cord layer 5 C3ipsiSCL5C30.5
Cervical segment 4ipsiCS40.5
Spinal cord layer 5 C4ipsiSCL5C40.5
Cervical segment 5ipsiCS50.5
Spinal cord layer 5 C5ipsiSCL5C50.5
Cervical segment 6ipsiCS60.5
Spinal cord layer 5 C6ipsiSCL5C60.5
Cervical segment 7ipsiCS70.5
Spinal cord layer 5 C7ipsiSCL5C70.5
Cervical segment 8ipsiCS80.5
Spinal cord layer 5 C8ipsiSCL5C80.5
Thoracal segment 1ipsiT10.5
Spinal cord layer 5 T1ipsiSCL5T10.5
Thoracal segment 2ipsiT20.5
Spinal cord layer 5 T2ipsiSCL5T20.5
Thoracal segment 3ipsiT30.5
Spinal cord layer 5 T3ipsiSCL5T30.5
Thoracal segment 4ipsiT40.5
Spinal cord layer 5 T4ipsiSCL5T40.5
Thoracal segment 5ipsiT50.5
Spinal cord layer 5 T5ipsiSCL5T50.5
Thoracal segment 6ipsiT60.5
Spinal cord layer 5 T6ipsiSCL5T60.5
Thoracal segment 7ipsiT70.5
Spinal cord layer 5 T7ipsiSCL5T70.5
Thoracal segment 8ipsiT80.5
Spinal cord layer 5 T8ipsiSCL5T80.5
Thoracal segment 9ipsiT90.5
Spinal cord layer 5 T9ipsiSCL5T90.5
Thoracal segment 10ipsiT100.5
Spinal cord layer 5 T10ipsiSCL5T100.5
Thoracal segment 11ipsiT110.5
Spinal cord layer 5 T11ipsiSCL5T110.5
Thoracal segment 12ipsiT120.5
Spinal cord layer 5 T12ipsiSCL5T120.5
Thoracal segment 13ipsiT130.5
Spinal cord layer 5 T13ipsiSCL5T130.5
Lumbar segment 1ipsiL10.5
Spinal cord layer 5 L1ipsiSCL5L10.5
Lumbar segment 2ipsiL20.5
Spinal cord layer 5 L2ipsiSCL5L20.5
Lumbar segment 3ipsiL30.5
Spinal cord layer 5 L3ipsiSCL5L30.5
Lumbar segment 4ipsiL40.5
Spinal cord layer 5 L4ipsiSCL5L40.5
Lumbar segment 5ipsiL50.5
Spinal cord layer 5 L5ipsiSCL5L50.5
Lumbar segment 6ipsiL60.5
Spinal cord layer 5 L6ipsiSCL5L60.5
Sacral segment 1ipsiSa10.5
Spinal cord layer 5 S1ipsiSCL5S10.5
Sacral segment 2ipsiSa20.5
Spinal cord layer 5 S2ipsiSCL5S20.5
Sacral segment 3ipsiSa30.5
Spinal cord layer 5 S3ipsiSCL5S30.5
Sacral segment 4ipsiSa40.5
Spinal cord layer 5 S4ipsiSCL5S40.5
Ventrolateral quadrant of the spinal cordipsiMESVLq-0.5
A5 noradrenaline cellscontraA5-0.5
Medial preoptic areacontraMPA1
Medial preoptic nucleuscontraMPO1
Median preoptic nucleuscontraMnPO1
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1
Premammillary nucleus dorsal partcontraPMD0.5
Cervical segment 1contraCS11
Area X C1contraSCL10C11
Spinal cord layer 5 C1contraSCL5C11
Spinal cord layer 3 C1contraSCL3C11
Spinal cord layer 4 C1contraSCL4C11
Spinal cord layer 7 C1contraSCL7C11
Cervical segment 2contraCS21
Area X C2contraSCL10C21
Spinal cord layer 5 C2contraSCL5C21
Spinal cord layer 3 C2contraSCL3C21
Spinal cord layer 4 C2contraSCL4C21
Spinal cord layer 7 C2contraSCL7C21
Cervical segment 3contraCS31
Area X C3contraSCL10C31
Spinal cord layer 5 C3contraSCL5C31
Spinal cord layer 3 C3contraSCL3C31
Spinal cord layer 4 C3contraSCL4C31
Spinal cord layer 7 C3contraSCL7C31
Cervical segment 4contraCS41
Area X C4contraSCL10C41
Spinal cord layer 5 C4contraSCL5C41
Spinal cord layer 3 C4contraSCL3C41
Spinal cord layer 4 C4contraSCL4C41
Spinal cord layer 7 C4contraSCL7C41
Cervical segment 5contraCS51
Area X C5contraSCL10C51
Spinal cord layer 5 C5contraSCL5C51
Spinal cord layer 3 C5contraSCL3C51
Spinal cord layer 4 C5contraSCL4C51
Spinal cord layer 7 C5contraSCL7C51
Cervical segment 6contraCS61
Area X C6contraSCL10C61
Spinal cord layer 5 C6contraSCL5C61
Spinal cord layer 3 C6contraSCL3C61
Spinal cord layer 4 C6contraSCL4C61
Spinal cord layer 7 C6contraSCL7C61
Cervical segment 7contraCS71
Area X C7contraSCL10C71
Spinal cord layer 5 C7contraSCL5C71
Spinal cord layer 3 C7contraSCL3C71
Spinal cord layer 4 C7contraSCL4C71
Spinal cord layer 7 C7contraSCL7C71
Cervical segment 8contraCS81
Area X C8contraSCL10C81
Spinal cord layer 5 C8contraSCL5C81
Spinal cord layer 3 C8contraSCL3C81
Spinal cord layer 4 C8contraSCL4C81
Spinal cord layer 7 C8contraSCL7C81
Thoracal segment 1contraT11
Area X T1contraSCL10T11
Spinal cord layer 5 T1contraSCL5T11
Spinal cord layer 3 T1contraSCL3T11
Spinal cord layer 4 T1contraSCL4T11
Spinal cord layer 7 T1contraSCL7T11
Thoracal segment 2contraT21
Area X T2contraSCL10T21
Spinal cord layer 5 T2contraSCL5T21
Spinal cord layer 3 T2contraSCL3T21
Spinal cord layer 4 T2contraSCL4T21
Spinal cord layer 7 T2contraSCL7T21
Thoracal segment 3contraT31
Area X T3contraSCL10T31
Spinal cord layer 5 T3contraSCL5T31
Spinal cord layer 3 T3contraSCL3T31
Spinal cord layer 4 T3contraSCL4T31
Spinal cord layer 7 T3contraSCL7T31
Thoracal segment 4contraT41
Area X T4contraSCL10T41
Spinal cord layer 5 T4contraSCL5T41
Spinal cord layer 3 T4contraSCL3T41
Spinal cord layer 4 T4contraSCL4T41
Spinal cord layer 7 T4contraSCL7T41
Thoracal segment 5contraT51
Area X T5contraSCL10T51
Spinal cord layer 5 T5contraSCL5T51
Spinal cord layer 3 T5contraSCL3T51
Spinal cord layer 4 T5contraSCL4T51
Spinal cord layer 7 T5contraSCL7T51
Thoracal segment 6contraT61
Area X T6contraSCL10T61
Spinal cord layer 5 T6contraSCL5T61
Spinal cord layer 3 T6contraSCL3T61
Spinal cord layer 4 T6contraSCL4T61
Spinal cord layer 7 T6contraSCL7T61
Thoracal segment 7contraT71
Area X T7contraSCL10T71
Spinal cord layer 5 T7contraSCL5T71
Spinal cord layer 3 T7contraSCL3T71
Spinal cord layer 4 T7contraSCL4T71
Spinal cord layer 7 T7contraSCL7T71
Thoracal segment 8contraT81
Area X T8contraSCL10T81
Spinal cord layer 5 T8contraSCL5T81
Spinal cord layer 3 T8contraSCL3T81
Spinal cord layer 4 T8contraSCL4T81
Spinal cord layer 7 T8contraSCL7T81
Thoracal segment 9contraT91
Area X T9contraSCL10T91
Spinal cord layer 5 T9contraSCL5T91
Spinal cord layer 3 T9contraSCL3T91
Spinal cord layer 4 T9contraSCL4T91
Spinal cord layer 7 T9contraSCL7T91
Thoracal segment 10contraT101
Area X T10contraSCL10T101
Spinal cord layer 5 T10contraSCL5T101
Spinal cord layer 3 T10contraSCL3T101
Spinal cord layer 4 T10contraSCL4T101
Spinal cord layer 7 T10contraSCL7T101
Thoracal segment 11contraT111
Area X T11contraSCL10T111
Spinal cord layer 5 T11contraSCL5T111
Spinal cord layer 3 T11contraSCL3T111
Spinal cord layer 4 T11contraSCL4T111
Spinal cord layer 7 T11contraSCL7T111
Thoracal segment 12contraT121
Area X T12contraSCL10T121
Spinal cord layer 5 T12contraSCL5T121
Spinal cord layer 3 T12contraSCL3T121
Spinal cord layer 4 T12contraSCL4T121
Spinal cord layer 7 T12contraSCL7T121
Thoracal segment 13contraT131
Area X T13contraSCL10T131
Spinal cord layer 5 T13contraSCL5T131
Spinal cord layer 3 T13contraSCL3T131
Spinal cord layer 4 T13contraSCL4T131
Spinal cord layer 7 T13contraSCL7T131
Lumbar segment 1contraL11
Area X L1contraSCL10L11
Spinal cord layer 5 L1contraSCL5L11
Spinal cord layer 3 L1contraSCL3L11
Spinal cord layer 4 L1contraSCL4L11
Spinal cord layer 7 L1contraSCL7L11
Lumbar segment 2contraL21
Area X L2contraSCL10L21
Spinal cord layer 5 L2contraSCL5L21
Spinal cord layer 3 L2contraSCL3L21
Spinal cord layer 4 L2contraSCL4L21
Spinal cord layer 7 L2contraSCL7L21
Lumbar segment 3contraL31
Area X L3contraSCL10L31
Spinal cord layer 5 L3contraSCL5L31
Spinal cord layer 3 L3contraSCL3L31
Spinal cord layer 4 L3contraSCL4L31
Spinal cord layer 7 L3contraSCL7L31
Lumbar segment 4contraL41
Area X L4contraSCL10L41
Spinal cord layer 5 L4contraSCL5L41
Spinal cord layer 3 L4contraSCL3L41
Spinal cord layer 4 L4contraSCL4L41
Spinal cord layer 7 L4contraSCL7L41
Lumbar segment 5contraL51
Area X L5contraSCL10L51
Spinal cord layer 5 L5contraSCL5L51
Spinal cord layer 3 L5contraSCL3L51
Spinal cord layer 4 L5contraSCL4L51
Spinal cord layer 7 L5contraSCL7L51
Lumbar segment 6contraL61
Area X L6contraSCL10L61
Spinal cord layer 5 L6contraSCL5L61
Spinal cord layer 3 L6contraSCL3L61
Spinal cord layer 4 L6contraSCL4L61
Spinal cord layer 7 L6contraSCL7L61
Sacral segment 1contraSa11
Area X S1contraSCL10S11
Spinal cord layer 5 S1contraSCL5S11
Spinal cord layer 3 S1contraSCL3S11
Spinal cord layer 4 S1contraSCL4S11
Spinal cord layer 7 S1contraSCL7S11
Sacral segment 2contraSa21
Area X S2contraSCL10S21
Spinal cord layer 5 S2contraSCL5S21
Spinal cord layer 3 S2contraSCL3S21
Spinal cord layer 4 S2contraSCL4S21
Spinal cord layer 7 S2contraSCL7S21
Sacral segment 3contraSa31
Area X S3contraSCL10S31
Spinal cord layer 5 S3contraSCL5S31
Spinal cord layer 3 S3contraSCL3S31
Spinal cord layer 4 S3contraSCL4S31
Spinal cord layer 7 S3contraSCL7S31
Sacral segment 4contraSa41
Area X S4contraSCL10S41
Spinal cord layer 5 S4contraSCL5S41
Spinal cord layer 3 S4contraSCL3S41
Spinal cord layer 4 S4contraSCL4S41
Spinal cord layer 7 S4contraSCL7S41
Ventrolateral quadrant of the spinal cordcontraMESVLq-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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