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Rat connectome



Cerebellum left


Abbreviation
CERE
Color       
Superior regionsMetencephalon

SynonymsAbbr.Language
 CB 
 Cb 
Kleinhirn Ger
Dorsal hindbrain  
CerebellumCEREEng
Cervelet Fr

SubregionsSide
Anterior medullary velumleft
Cerebellar commissureleft
Cerebellar cortexleft
Cerebellar nucleileft
Cerebellar white matterleft
Decussation inferior of the cerebellar peduncleleft
Flocculonodular lobeleft
Interstitial nucleus of the decussation of the superior cerebellar peduncleleft
Medullary mass of the cerebellumleft
Superior medullary velumleft
Surfaceleft
Uncinate fasciculusleft
Cerebellar pedunclesleft
Marginal nucleus of the superior cerebellar peduncleleft
Cerebellum parallel fibersleft
Cerebellum mossy fibersleft

Output to

NameSideAbbr.WeightDetails
Oculomotor nucleusipsi3-0.5
Ventrolateral periaqueductal grayipsiVLPAG0
Red nucleusipsiR-2
Posterior interposed nucleusipsiCERpin-0.5
Lateral cerebellar nucleusipsiCERL-0.5
Superior cerebellar peduncleipsisucep-2
Pontine nucleiipsiPn-2
Ventrolateral pontine reticular formationipsivlPRF1
Lateral reticular nucleusipsiLRt-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
MyelencephalonipsiMYC-0.5
Spinal vestibular nucleusipsiSpVe3
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medulla lateral partipsiCVLMl-0.5
Lateralmost part of the caudal ventrolateral medullaipsiCVLMLmo-0.5
A1 noradrenergic cellsipsiA1-0.5
Lateral preoptic areaipsiLPO1
Medial preoptic nucleusipsiMPO1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area perifornical partipsiPFx3
Peduncular part of lateral hypothalamusipsiPLH3
Dorsomedial hypothalamic nucleus diffuse partipsiDMH-0.5
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleusipsiVMH1
Arcuate hypothalamic nucleus lateroposterior partipsiArcLP2
Arcuate nucleus medial partipsiArcM2
Paraventricular hypothalamic nucleusipsiPa0
Dorsal thalamusipsiDOR-0.5
Ventrolateral thalamic nucleusipsiVL3
Ventromedial thalamic nucleusipsiVM-0.5
Centrolateral intralaminar nucleusipsiCLILN3
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF-2
Caudate putamenipsiCPu1
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra33
Red nucleuscontraR3
Superior colliculus intermediate layerscontraSCi-0.5
Substantia nigra compact partcontraSNC-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Ventrolateral pontine reticular formationcontravlPRF1
Ventral lateral medulla oblongatacontraMVL0.5
Inferior olivecontraIO3
Inferior olive medial nucleus caudal partcontraIOMc3
Inferior olive principal nucleuscontraIOPr3
Lateral preoptic areacontraLPO1
Medial preoptic nucleuscontraMPO1
Lateral hypothalamic area perifornical partcontraPFx1
Peduncular part of lateral hypothalamuscontraPLH1
Posterior hypothalamic areacontraPHA1
Ventromedial hypothalamic nucleuscontraVMH1
Arcuate hypothalamic nucleus lateroposterior partcontraArcLP1
Arcuate nucleus medial partcontraArcM1
Nucleus of the posterior commissurecontraPCom-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG2
Nuclei of the lateral lemniscusipsiNLL2
Periaqueductal grayipsiPAG-0.5
Superior colliculusipsiSC2
Ventral tegmental area A10ipsiVTA-0.5
Medial cerebellar nucleusipsiMed-0.5
PonsipsiP3
A4 noradrenaline cellsipsiA4-0.5
Locus coeruleusipsiLC2
Intermediate part of the anterior pole of the locus coeruleusipsiLCimap3
Dorsal part of the anterior pole of the locus coeruleusipsiLCda3
Ventral part of the posterior pole of the locus coeruleusipsiLCvp3
Intermediate part of the posterior pole of the locus coeruleusipsiLCip3
Dorsal part of the posterior pole of the locus coeruleusipsiLCdp3
Pontine grayipsiPG-0.5
Reticulotegmental nucleusipsiRETn-0.5
Pontine nucleiipsiPn-1
Prepositus nucleusipsiPr-1
Mesencephalic reticular formationipsiMRF3
Rostral mesencephalic reticular formationipsiRMRf2
Ventrolateral pontine reticular formationipsivlPRF1
Subcoerulear areaipsiSCoe-0.5
Pontine reticular nucleus caudal partipsiPNC2
Parabrachial nucleusipsiPB2
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Lateral reticular nucleusipsiLRt3
Subnucleus reticularis dorsalisipsiSRD-0.5
Ventral part of the medullary reticular nucleus dorsal partipsivMdDd-0.5
Medullary reticular nucleus ventral partipsiMdV3
Parvicellular reticular nucleusipsiPCRt-0.5
Medulla oblongataipsiMeOb3
Mesencephalic trigeminal nucleusipsiMe50
Interstitial system of the spinal trigeminal tractipsiSp5nciss0
Insular trigeminal-cuneatus lateralis nucleusipsii5CuL3
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Cochlear nucleusipsiCON0
Dorsal cochlear nucleusipsiDC-0.5
U-zone of UeyamaipsiUZU-0.5
Superior vestibular nucleusipsiSuVe-0.5
Medial vestibular nucleusipsiMVe-0.5
Inferior vestibular nucleusipsiIVN-1
Vestibular ganglionipsi8VG-0.5
Vestibular ganglion cellsipsi8VGC-0.5
Raphe nucleiipsiRAN-1
Dorsal raphe nucleusipsiDR1
Superior central raphe nucleusipsiCS1
Raphe magnus nucleusipsiRMg-0.5
Raphe magnus nucleus rostral partipsiRMgR-0.5
A1 noradrenergic cellsipsiA10
Cuneate nucleusipsiCu-0.5
Cuneate nucleus caudal partipsiCuC1
Cuneate nucleus rostral partipsiCuRo1.5
Middle part of cuneate nucleusipsiCuM1
GracileipsiGra1
Nucleus of BischoffipsiNBi0
External cuneate nucleusipsiECu-0.5
Olivary nucleusipsiON-0.5
Inferior oliveipsiIO3
Inferior olive lateral partipsiIOL-0.5
Inferior olive medial nucleusipsiIOM-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
Basal forebrainipsiBAF0
Tuberomammillary nucleusipsiTuM1
Tuberomammillary nucleus diffuse partipsiTuMdif0
Tuberomammillary nucleus medial partipsiTuMM0
Ventral tuberomammillary nucleusipsiVTM0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area perifornical partipsiPFx3
Peduncular part of lateral hypothalamusipsiPLH3
Anterior hypothalamic nucleusipsiAHn0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsal partipsiDMD1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM0
Posterior hypothalamic areaipsiPHA2
Posterior magnocellular nucleiipsiPHApm0
Ventromedial hypothalamic nucleusipsiVMH1
Paraventricular hypothalamic nucleusipsiPa2
Lateral mammillary nucleusipsiLM1
Medial mammillary nucleus medial partipsiMM1
Premammillary nucleusipsiPMAN1
Climbing fibersipsicLf-0.5
Dorsal spinocerebellar tractipsidsc-2
Dorsal funiculusipsidfu-2
Diffuse aggregate of nerve cells in the dorsal funiculusipsiANdfu-0.5
Spinocerebellar fibersipsiscf-0.5
Ventral spinocerebellar tractipsivsc-2
Central amygdaloid nucleusipsiCe0
Ventral pallidumipsiVP-0.5
Parietal association cortexipsiPtA-1
Central cervical nucleusipsiMESccn1
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 6 C6ipsiSCL6C6-2
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 6 C7ipsiSCL6C7-2
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layers C8ipsiSCLC82
Spinal cord layer 6 C8ipsiSCL6C8-2
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Dorsal nucleus T1ipsiDNT1-2
Spinal cord layers T1ipsiSCLT12
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-2
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Dorsal nucleus T2ipsiDNT2-2
Spinal cord layers T2ipsiSCLT22
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Dorsal nucleus T3ipsiDNT3-2
Spinal cord layers T3ipsiSCLT32
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Dorsal nucleus T4ipsiDNT4-2
Spinal cord layers T4ipsiSCLT42
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Dorsal nucleus T5ipsiDNT5-2
Spinal cord layers T5ipsiSCLT52
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Dorsal nucleus T6ipsiDNT6-2
Spinal cord layers T6ipsiSCLT62
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Dorsal nucleus T7ipsiDNT7-2
Spinal cord layers T7ipsiSCLT72
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Dorsal nucleus T8ipsiDNT8-2
Spinal cord layers T8ipsiSCLT82
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Dorsal nucleus T9ipsiDNT9-2
Spinal cord layers T9ipsiSCLT92
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Dorsal nucleus T10ipsiDNT10-2
Spinal cord layers T10ipsiSCLT102
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Dorsal nucleus T11ipsiDNT11-2
Spinal cord layers T11ipsiSCLT112
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Dorsal nucleus T12ipsiDNT12-0.5
Spinal cord layers T12ipsiSCLT122
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 7 T12ipsiSCL7T12-0.5
Thoracal segment 13ipsiT13-0.5
Dorsal nucleus T13ipsiDNT13-0.5
Spinal cord layers T13ipsiSCLT132
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Lumbar segment 1ipsiL1-0.5
Dorsal nucleus L1ipsiDNL1-0.5
Spinal cord layers L1ipsiSCLL12
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Spinal cord layer 7 L1ipsiSCL7L1-0.5
Spinal cord layer 9 L1ipsiSCL9L1-0.5
Lumbar segment 2ipsiL2-0.5
Dorsal nucleus L2ipsiDNL2-0.5
Spinal cord layers L2ipsiSCLL22
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Spinal cord layer 7 L2ipsiSCL7L2-0.5
Spinal cord layer 9 L2ipsiSCL9L2-0.5
Dorsal nucleus L3ipsiDNL3-0.5
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Spinal cord layer 7 L3ipsiSCL7L3-0.5
Spinal cord layer 9 L3ipsiSCL9L3-0.5
Spinal cord layer 7 L4ipsiSCL7L4-0.5
Spinal cord layer 9 L4ipsiSCL9L4-0.5
Spinal cord layer 7 L5ipsiSCL7L5-0.5
Spinal cord layer 9 L5ipsiSCL9L5-0.5
Spinal cord layer 7 L6ipsiSCL7L6-0.5
Spinal cord layer 9 L6ipsiSCL9L6-0.5
Lumbosacral spinal cord layers medial portion of the intermediate gray zoneipsiLSSCLizm-0.5
Lumbosacral spinal cord lateral spinal nucleusipsiLSSCLS-0.5
Central graycontraCG1
Nuclei of the lateral lemniscuscontraNLL1
Superior colliculuscontraSC1
Substantia nigra compact partcontraSNC-0.5
Substantia nigra lateral partcontraSNL-0.5
Substantia nigra reticular partcontraSNR-0.5
Medial ventral paraflocculuscontraPFlvM-0.5
Interposed cerebellar nuclei dorsomedial partcontraICNDM0
Dorsal part of the intermediate region of the interpositus nuclear complexcontraDIntim0
PonscontraP-0.5
Locus coeruleuscontraLC-0.5
Rostral mesencephalic reticular formationcontraRMRf1
Ventrolateral pontine reticular formationcontravlPRF1
Pontine reticular nucleus caudal partcontraPNC1
Parabrachial nucleuscontraPB1
Lateral reticular nucleuscontraLRt3
Principal sensory trigeminal nucleuscontraPr53
Interstitial system of the spinal trigeminal tractcontraSp5nciss0
U-zone of UeyamacontraUZU-0.5
Cuneate nucleuscontraCu-0.5
Cuneate nucleus rostral partcontraCuRo-0.5
External cuneate nucleuscontraECu-0.5
Inferior olivecontraIO3
Inferior olive medial nucleuscontraIOM3
Tuberomammillary nucleus diffuse partcontraTuMdif0
Tuberomammillary nucleus medial partcontraTuMM0
Ventral tuberomammillary nucleuscontraVTM0
Lateral hypothalamic area perifornical partcontraPFx1
Peduncular part of lateral hypothalamuscontraPLH1
Dorsomedial hypothalamic nucleus [Medial zone]contraDM1
Dorsomedial hypothalamic nucleus dorsal partcontraDMD1
Posterior hypothalamic areacontraPHA1
Ventromedial hypothalamic nucleuscontraVMH1
Paraventricular hypothalamic nucleuscontraPa1
Lateral mammillary nucleuscontraLM1
Medial mammillary nucleus medial partcontraMM1
Premammillary nucleuscontraPMAN1
Central cervical nucleus C1contraCeCvC1-0.5
Central cervical nucleus C2contraCeCvC2-0.5
Central cervical nucleus C3contraCeCvC3-0.5
Spinal cord layer 7 T11contraSCL7T11-0.5
Spinal cord layer 7 T12contraSCL7T12-0.5
Spinal cord layer 7 T13contraSCL7T13-0.5
Spinal cord layer 7 L1contraSCL7L1-0.5
Spinal cord layer 7 L2contraSCL7L2-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 5 L6contraSCL5L6-0.5
Spinal cord layer 7 L6contraSCL7L6-0.5
Spinal cord layer 5 S1contraSCL5S1-0.5
Spinal cord layer 7 S1contraSCL7S1-0.5
Spinal cord layer 5 S2contraSCL5S2-0.5
Spinal cord layer 7 S2contraSCL7S2-0.5
Spinal cord layer 5 S3contraSCL5S3-0.5
Spinal cord layer 7 S3contraSCL7S3-0.5
Spinal cord layer 5 S4contraSCL5S4-0.5
Spinal cord layer 7 S4contraSCL7S4-0.5
Spinal cord layer 5 Co1contraSCL5Co1-0.5
Spinal cord layer 7 Co1contraSCL7Co1-0.5
Spinal cord layer 5 Co2contraSCL5Co2-0.5
Spinal cord layer 7 Co2contraSCL7Co2-0.5
Spinal cord layer 5 Co3contraSCL5Co3-0.5
Spinal cord layer 7 Co3contraSCL7Co3-0.5
Stomach wallipsiOrgsStomWS-0.5
Hindpaw skinipsiOrgHPS-0.5
Jaw muscleipsiMuscJaw-0.5
Muscle spindles of the masseter muscleipsiMuscMassSpi0
Nasal cavityipsiOrgNaCa2
Hindpaw skincontraOrgHPS-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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