University of Rostock

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Rat connectome



Superior colliculus intermediate and deep layers left


Abbreviation
SCidLa
Color       
Superior regionsSuperior colliculus layers

SynonymsAbbr.Language
Middle layers of the superior colliculus Eng
Superior colliculus intermediate and deep layersSCidLaEng

SubregionsSide
Superior colliculus intermediate layersleft
Superior colliculus deep layersleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG-0.5
Substantia nigra A9ipsiSN-0.5
Peripeduncular nucleusipsiPP-0.5
Ventrolateral tegmental areaipsiVLTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Reticulotegmental nucleus of the ponsipsiRtTg-0.5
Pontine nucleiipsiPn-0.5
Mesopontine reticular formationipsiMPRF-0.5
Pontine reticular nucleusipsiPRN-0.5
Cuneiforme nucleusipsiCnF-0.5
Medulla oblongataipsiMeOb-0.5
Facial nucleusipsi7-0.5
Mesencephalic trigeminal nucleusipsiMe5-0.5
Periabducens rapheipsiPARAN-0.5
Inferior oliveipsiIO-0.5
HypothalamusipsiHYPO-0.5
Centrolateral thalamic nucleusipsiCL-0.5
Paracentral thalamic nucleusipsiPC-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Intralaminar nucleiipsiILN-0.5
Laterodorsal thalamic nucleusipsiLD-0.5
Zona incertaipsiZI-0.5
Anterior pretectal nucleus anterior partipsiAPTA-0.5
Subthalamic nucleusipsiSTh-0.5
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC-0.5
Medial geniculate nucleus medial partipsiMGM-0.5
Cervical segmentsipsiCSeg-0.5
Periaqueductal graycontraPAG-0.5
Peripeduncular nucleuscontraPP-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Medulla oblongatacontraMeOb-0.5
Paracentral thalamic nucleuscontraPC-0.5
Posterior thalamic nuclear groupcontraPo-0.5
Medial geniculate nucleus medial partcontraMGM-0.5

Input from

NameSideAbbr.WeightDetails
Superior colliculusipsiSC-0.5
Intermediate gray layer of the superior colliculusipsiInG-0.5
Intermediate white layer of the superior colliculusipsiInWh-0.5
Deep gray layer of the superior colliculusipsiDpG-0.5
Peduncularpontine nucleus caudal levelsipsiPPNCa-0.5
Substantia nigra A9ipsiSN-0.5
Substantia nigra reticular partipsiSNR-0.5
Substantia nigra A9 GABAergic cellsipsiSNGABA-0.5
Ventrolateral tegmental areaipsiVLTg-0.5
Deep cerebellar nucleiipsiDNC-0.5
Locus coeruleusipsiLC-0.5
Prepositus nucleusipsiPr-0.5
Parabrachial nucleusipsiPB-0.5
Mesencephalic trigeminal nucleusipsiMe5-0.5
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Dorsal raphe nucleusipsiDR-0.5
Olivary pretectal nucleusipsiOPT-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Suprageniculate thalamic nucleusipsiSG-0.5
Rostral suprageniculate thalamic nucleusipsiRSG-0.5
Lateral posterior thalamic nucleusipsiLP-0.5
Zona incertaipsiZI-0.5
Nucleus of the optic tractipsiOT-0.5
Anterior pretectal nucleusipsiAPT-0.5
Area 29dipsiA29d-0.5
Retrosplenial granular cortex c regionipsiRSGc-0.5
Orofacial motor cortexipsiOFCx-0.5
Whiskers motor cortexipsiWMCx3
Nucleus of the posterior commissureipsiPCom-0.5
Ventral lateral geniculate nucleus magnocellular partipsiVLGMC-0.5
Spinal cordipsiMES-0.5
Superior colliculuscontraSC-0.5
Substantia nigra A9 GABAergic cellscontraSNGABA-0.5
Olivary pretectal nucleuscontraOPT-0.5
RetinacontraRET-0.5
Retrosplenial agranular cortexcontraRSA-0.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Medial agranular prefrontal cortexcontraAGm-0.5
Sensory regionscontraSR-0.5
Secondary visual cortex medial areacontraV2M-0.5
Nucleus of the posterior commissurecontraPCom-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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