University of Rostock

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Rat connectome



Peripeduncular nucleus left


Abbreviation
PP
Color       
Superior regionsPeripeduncular area

SynonymsAbbr.Language
 PPN 
 PPd 
Nucleus peripeduncularis Lat
Peripeduncular nucleusPPEng
Peripeduncular nucleusnPPEng

SubregionsSide
Peripeduncular nucleus medial partleft
Peripeduncular nucleus rostral centrolateral partleft
Peripeduncular nucleus dorsal and ventralleft

Output to

NameSideAbbr.WeightDetails
Central grey periaqueductalipsiCGPAG2
Medial paralemniscal nucleusipsiMPL2
Periaqueductal gray rostral partipsiPAGR3
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Substantia nigra compact partipsiSNC0
Substantia nigra lateral partipsiSNL1
Ventral tegmental area A10ipsiVTA-0.5
Lateral cerebellar nucleus dorsolateral magnocellular portionipsiCERLdl-0.5
Reticular formation at trigeminal motor nucleusipsiRF50.5
Pontine reticular nucleusipsiPRN3
Cuneiforme nucleusipsiCnF1
Gigantocellular reticular nucleusipsiGi3
Medullary reticular nucleusipsiMdD3
Parvicellular reticular nucleusipsiPCRt0.5
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleusipsiSp5nc0
Paragigantocellular reticular nucleusipsiPGi1
Endopiriform systemipsiEnN-1
Basal nucleus MeynertipsiB0.5
Basal nucleus Meynert medial partipsiBmp1
Medial preoptic areaipsiMPA2
Medial preoptic nucleusipsiMPO2
Dorsomedial hypothalamic nucleusipsiDMHy1
Dorsomedial hypothalamic nucleus non-compact partipsiDMHyncp2
Posterior region [Lateral division of the hypothalamus]ipsiPReg2
Lateral zoneipsiLHA3
Anterior lateral areaipsiALA2
Lateral hypothalamic areaipsiLH3
Lateroanterior hypothalamic nucleusipsiLAH-0.5
Tuberal nucleusipsiTU2
Anterior hypothalamic areaipsiAHA2
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Medial basal hypothalamusipsiMBH3
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC3
Arcuate nucleusipsiArc2
Arcuate nucleus anteroventral partipsiArcAV0
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus anterior parvicellular subdivisionipsiaPavPo2
Suprachiasmatic nucleusipsiSCh2
Retrochiasmatic areaipsiRCh3
Posterior thalamic nuclear groupipsiPo2
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reunienes thalamic nucleus rostromedial divisionipsiRerm1
Reuniens thalamic nucleus rostrolateral divisionipsiRerl1
Ventromedial thalamic nucleusipsiVM-0.5
Anterior pretectal nucleusipsiAPT-0.5
Lateral portion of the internal capsuleipsiLic-0.5
Stria medullaris of the thalamusipsism-2
Amygdaloid complexipsiAC2
Basal nucleusipsiBnc2
Accessory basal nucleusipsiAB2
Basal dorsal nucleus medial partipsiBDM2
Basal nucleus ventral divisonipsiBncV1
Basolateral amygdaloid nucleusipsiBL2
Basomedial amygdaloid nucleusipsiBM2
Anterior basomedial nucleusipsiBMA-0.5
Lateral amygdaloid nucleusipsiLA3
Dorsolateral part of the lateral nucleusipsiLaDL2
Lateral amygdaloid nucleus posterolateral partipsiLApL-0.5
Lateral nucleus medial partipsiLAM-0.5
Bed nucleus of the stria terminalisipsiBST2
Central amygdaloid nucleusipsiCe2.5
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM-1
Central amygdaloid nucleus medial division caudal partipsiCeMc-0.5
Central amygdaloid nucleus medial division rostral partipsiCeMR-0.5
Central amygdaloid nucleus pallidal partipsiCePa2
Central amygdaloid nucleus putamenal partipsiCePu2
Central amygdaloid nucleus ventral partipsiCeV-0.5
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Amygdalopiriform transition areaipsiAPir1
Anterior amygdaloid areaipsiAA2
Cortical amygdaloid nucleusipsiCAn2
Dorsal area of posterior part of cortical amygdaloid nucleusipsiCAnDP2
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus dorsal tipipsiMeDT2
Bed nucleus of the accessory olfactory tractipsiBAOT2
Amygdalostriatal transition areaipsiAStr-0.5
Amygdalostriatal transition area rostrocaudal partipsiAStrrc-0.5
Globus pallidusipsiGP2
Ventral pallidumipsiVP-1
Caudate putamenipsiCPu2
Anteroventral segment of the striatumipsiCPuav-0.5
Caudal striatumipsiCPuc1
Ventral region of the caudal striatumipsiCPuVc-0.5
Dorsal striatumipsiCPud2
Posterior caudate putamenipsiCPup2
Ventral striatumipsiCPuv-0.5
Fornixipsif-2
Lateral entorhinal cortex ventral partipsiVLEA1
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Lateral parietal association cortexipsiLPtA-0.5
Temporal cortexipsiTE-0.5
Ventral temporal association cortexipsiTev-0.5
Secondary auditory cortex dorsal areaipsiAuD-0.5
Visceral dysgranular insular cortexipsiDIv-0.5
Perirhinal cortex anterior portionipsiPRha2
Ectorhinal cortexipsiA36-0.5
Secondary somatosensory cortexipsiS2-0.5
Lateral orbital cortexipsiLO1
Superior colliculuscontraSC0.5
Lateral cerebellar nucleus dorsolateral magnocellular portioncontraCERLdl-0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Medial preoptic nucleuscontraMPO-0.5
Dorsomedial hypothalamic nucleuscontraDMHy1
Dorsomedial hypothalamic nucleus non-compact partcontraDMHyncp2
Lateral zonecontraLHA-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0
Ventromedial hypothalamic nucleuscontraVMH1
Ventromedial hypothalamic nucleus central partcontraVMHC-0.5
Arcuate nucleuscontraArc-0.5
Retrochiasmatic areacontraRCh0.5
Stria medullaris of the thalamuscontrasm0
Fornixcontraf0
Vagus nerveipsiAutoV-10
Vagus nervecontraAutoV-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Periaqueductal grayipsiPAG3
External cortex of the inferior colliculus layer 1ipsiECICL1-0.5
Shell region of the central nucleus of the inferior colliculusipsiSIC2
Optic nerve layer of the superior colliculusipsiOp1
Superficial gray layer of the superior colliculusipsiSuG1
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Intermediate gray layer of the superior colliculusipsiInG2
Deep gray layer of the superior colliculusipsiDpG2
Central cerbellar nucleiipsiCERcn0
Interposed cerebellar nucleiipsiICN0
Lateral cerebellar nucleusipsiCERL1
Medial cerebellar nucleusipsiMed0
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract dorsal stripipsiSolDs1
Parasolitary nucleusipsiPSol-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Median raphe nucleusipsiMnR1
GracileipsiGra1
Substantia innominataipsiSI0
Lateral preoptic areaipsiLPO0
Medial preoptic areaipsiMPA0
Medial preoptic area dorsolateral partipsiMPADL1
Medial preoptic nucleusipsiMPO1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Tuberal nucleusipsiTU1
Anterior hypothalamic area posterior partipsiAHAP-2
Anterior hypothalamic nucleusipsiAHn-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleus caudal partipsiPHCa2
Posterior hypothalamic nucleus rostral partipsiPHRo2
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC4
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus shellipsiVMS1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleusipsiPa-1
Periventricular hypothalamic nucleusipsiPe0.5
Perifornical nucleusipsiPeF2
Retrochiasmatic areaipsiRCh3
Anterior group of the dorsal thalamusipsiATN2
Parafascicular thalamic nucleusipsiPF-0.5
Posterior limitans thalamic nucleusipsiPLi-0.5
Ventral posterior thalamic nucleus parvicellular partipsiVPPC-0.5
Ventrobasal complexipsiVB3
Posterior intralaminar thalamic nucleusipsiPIL-0.5
Posterior intralaminar thalamic nucleus lateralmost partipsiPILlm-0.5
Subparafascicular thalamic nucleusipsiSPF-0.5
Lateral subparafascicular thalamic nucleusipsiSPFL-0.5
Bed nucleus of the stria terminalis central divisionipsiBSTC-0.5
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA-0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial division posterior partipsiBSTMP-0.5
Bed nucleus of the stria terminalis supracapsular partipsiBSTS-0.5
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt1
Central amygdaloid nucleusipsiCe3
Medial amygdaloid nucleusipsiMe-0.5
Medial amygdaloid nucleus anteroventral partipsiMeAV-0.5
Caudal globus pallidusipsiGPc0.5
Medial striatumipsiCPum2
Caudal striatumipsiCPuc-2
Dorsal striatumipsiCPud1.5
Ventral striatumipsiCPuv1.5
Prelimbic cortexipsiPrL1
Parietal association cortexipsiPtA2
Temporal association area 2ipsiTe2-3
Temporal association area 2 dorsal partipsiTe2D2
Temporal association area 2 ventral partipsiTe2V1.5
Perirhinal cortexipsiA352
Medial prefrontal cortexipsimPFC1
Primary somatosensory cortexipsiS11
Ventral lateral geniculate nucleusipsiVLG-0.5
Marginal zone of medial geniculate nucleusipsiMMG-1
Medial geniculate nucleus medial partipsiMGM-1
Interpeduncular nucleusipsiIP3
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Lumbar segment 6ipsiL61
Central graycontraCG1
Superior colliculus intermediate and deep layerscontraSCidLa-0.5
Medial preoptic nucleuscontraMPO-0.5
Tuberal nucleuscontraTU0.5
Posterior hypothalamic nucleus caudal partcontraPHCa1
Posterior hypothalamic nucleus rostral partcontraPHRo1
Ventromedial hypothalamic nucleuscontraVMH0.5
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1.5
Anterior group of the dorsal thalamuscontraATN0
Ventrobasal complexcontraVB0
Bed nucleus of the stria terminalis medial division posterior partcontraBSTMP-0.5
Central amygdaloid nucleuscontraCe0
Medial amygdaloid nucleuscontraMe-0.5
Interpeduncular nucleuscontraIP0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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