University of Rostock

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Rat connectome



Medulla oblongata right


Abbreviation
MeOb
Color       
Superior regionsMyelencephalon

SynonymsAbbr.Language
Bulb  
Caudal part of brain stem Eng
Bulb region Eng
Supraspinal region Eng
Medulla oblongataMeObEng

SubregionsSide
Adrenaline cell groupright
Ambiguus nucleusright
Area postremaright
Between the fiber bundles of the pyramidal decussationright
Boetzinger complexright
Brain nervesright
Brain stem premotor cell groupsright
Caudal medulla oblongataright
Commissural nucleus of Xright
Decussation of the predorsal bundleright
Dorsal acoustic striaright
Dorsal column nucleiright
Dorsal medulla oblongataright
Dorsomedial medullary region oblongataright
Dorsomedial nucleus of Astoemright
Dorsomedial rostral medulla oblongataright
Epifascicular nucleusright
External cuneate nucleusright
Infracerebellar nucleusright
Intercalated nucleus of the medullaright
Intermediate nucleus of the medullaright
Intermediate zone between the nucleus ambiguus and the dorsal motor nucleus of the vagusright
Internal arcuate fibersright
Interstitial nucleus of the medulla oblongataright
Linear nucleus of the medullaright
Matrix region of the medullaright
Median accessory nucleus of the medullaright
Medulla oblongata dorsal partright
Medulla oblongata dorsomedial partright
Medulla oblongata lateral partright
Medulla oblongata rostral partright
Medullary pyramidright
Motor nuclei of cranial nervesright
Nucleus interfascicularis hypoglossiright
Nucleus of Rollerright
Nucleus Xright
Nucleus Zright
Obexright
Olivary nucleusright
Paraambiguus nucleusright
Paragigantocellular reticular nucleusright
Pre Boetzinger complexright
Predorsal bundleright
Retroambiguus nucleusright
Retrofacial nucleusright
Retrotrapezoid nucleusright
Rostral ventral respiratory groupright
Rostromedial medulla oblongataright
Salivatory systemright
Subependymal zone of the medulla oblongataright
Subpostrema arearight
Subretrofacial nucleusright
Substantia grisea centralis of the medulla oblongataright
Supraspinal nucleusright
Surface of the medulla oblongataright
Transition zone spinal cord medulla oblongataright
Ventral medulla oblongataright
Ventromedial medulla oblongataright
Medulla oblongata rostroventralright
Ventralmost border of the medulla oblongataright
Ventral vicinity of the retrofacial nucleusright
Rostrocaudal extent of the medullaright
Between motor nucleus of vagus and nucleus of the solitary tractright
Middle medulla oblongataright
Vagocolitary complexright
Medulla oblongata medial partright
Along the border between the nucleus of the solitary tract and the nucleus nervi vagiright
Medullary motor nucleiright
Sympathoexitatory area rostral to ventrolateral medulla right
Rostrodorsal medulla oblongataright
Stapedius motoneuronsright
Ventromedial medullaright
Sympathetic premotor neurons of the medulla oblongataright
Compact interfascicular nucleusright
Nucleus interstitialis striae medullarisright
Cerebrospinal fluid-containing nucleusright

Output to

NameSideAbbr.WeightDetails
Nucleus of the solitary tract central partcontraSolCe-0.5
Nucleus of the solitary tract commissural partcontraSolC-0.5
Caudal ventrolateral medulla lateral partcontraCVLMl3
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Intermediolateral cell column T1contraIMLT1-0.5
Intermediolateral cell column T2contraIMLT2-0.5
Intermediolateral cell column T3contraIMLT3-0.5
Intermediolateral cell column T4contraIMLT4-0.5
Intermediolateral cell column T5contraIMLT5-0.5
Intermediolateral cell column T6contraIMLT6-0.5
Intermediolateral cell column T7contraIMLT7-0.5
Intermediolateral cell column T8contraIMLT8-0.5
Intermediolateral cell column T9contraIMLT9-0.5
Intermediolateral cell column T10contraIMLT10-0.5
Intermediolateral cell column T11contraIMLT11-0.5
Intermediolateral cell column T12contraIMLT12-0.5
Intermediolateral cell column T13contraIMLT13-0.5
Intermediolateral cell column L1contraIMLL1-0.5
Intermediolateral cell column L2contraIMLL2-0.5
Intermediolateral cell column L3contraIMLL3-0.5
Intermediolateral cell column L4contraIMLL4-0.5
Intermediolateral cell column L5contraIMLL5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5contraBCL5-0.5
Intermediolateral cell column L6contraIMLL6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6contraBCL6-0.5
Lateroventral part of the central grayipsiCGLV-0.5
Dorsal periaqueductal grayipsiDPAG-0.5
Lateral periaqueductal grayipsiLPAG-0.5
Periaqueductal gray medial partipsiPAGm-0.5
Ventral periaqueductal grayipsiVPAG-0.5
CerebellumipsiCERE3
Locus coeruleusipsiLC-0.5
Pontine reticular nucleusipsiPRN-0.5
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB-0.5
Hypoglossal nucleusipsi12S-0.5
Nucleus of the solitary tract central partipsiSolCe-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract intermediate partipsiSolIM0.5
Parasolitary nucleusipsiPSol0.5
Dorsal motor nucleus of vagusipsi103
Caudal ventrolateral medulla lateral partipsiCVLMl3
Gracile nucleus principal partipsiGr0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Retrochiasmatic areaipsiRCh0
Central medial thalamic nucleusipsiCM-0.5
Midline in the central medial thalamic nucleusipsiCMmi-0.5
Mediodorsal thalamic nucleusipsiMD-0.5
Intermediodorsal thalamic nucleusipsiIMD-0.5
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Forelimb motor cortexipsiFMCx-2
Caudal forelimb motor areaipsiCFMA-2
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx-2
Cervical segmentsipsiCSeg3
Thoracal segment 1ipsiT13
Intermediolateral cell column T1ipsiIMLT1-0.5
Thoracal segment 2ipsiT23
Intermediolateral cell column T2ipsiIMLT2-0.5
Thoracal segment 3ipsiT33
Intermediolateral cell column T3ipsiIMLT3-0.5
Thoracal segment 4ipsiT43
Intermediolateral cell column T4ipsiIMLT4-0.5
Intermediolateral cell column T5ipsiIMLT5-0.5
Intermediolateral cell column T6ipsiIMLT6-0.5
Intermediolateral cell column T7ipsiIMLT7-0.5
Intermediolateral cell column T8ipsiIMLT8-0.5
Intermediolateral cell column T9ipsiIMLT9-0.5
Intermediolateral cell column T10ipsiIMLT10-0.5
Intermediolateral cell column T11ipsiIMLT11-0.5
Intermediolateral cell column T12ipsiIMLT12-0.5
Intermediolateral cell column T13ipsiIMLT13-0.5
Intermediolateral cell column L1ipsiIMLL1-0.5
Intermediolateral cell column L2ipsiIMLL2-0.5
Intermediolateral cell column L3ipsiIMLL3-0.5
Intermediolateral cell column L4ipsiIMLL4-0.5
Intermediolateral cell column L5ipsiIMLL5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL5-0.5
Intermediolateral cell column L6ipsiIMLL6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL6-0.5
Ventral horn of spinal cordipsiVHMES1
PericardiumipsiOrgsPeric-0.5
Outer surface of pericardiumipsiOrgsOSPeric0
Surface of the heartipsiOrgsCorS0
Cervical oesophagusipsiOrgsOesC1
StomachcontraOrgsStomS2
Gastric funduscontraOrgsStomFu-0.5
StomachipsiOrgsStomS2
Gastric fundusipsiOrgsStomFu2
Stomach wallipsiOrgsStomWS-0.5
Tail skinipsiOrgBSTail-10
Interscapular brown fat tissueipsiOrgisBFT-10
Sternomastoid muscleipsiMuscST-0.5
Thoracic cavityipsiOrgTho0
TestisipsiOrgTest-10
Abdominal cavityipsiORGabdc0

Input from

NameSideAbbr.WeightDetails
Central graycontraCG1
Lateral periaqueductal graycontraLPAG-0.5
Ventrolateral periaqueductal graycontraVLPAG-1
Superior colliculus intermediate and deep layerscontraSCidLa-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Lateral reticular nucleuscontraLRt1
Area postremacontraAP-0.5
Medial vestibular nucleuscontraMVe2
Nucleus of the solitary tractcontraSol2
Nucleus of the solitary tract intermediate partcontraSolIM3
Nucleus of the solitary tract interstitial partcontraSoli3
Medial part of the lateral subnucleus of the solitary tractcontraSolLMe3
Nucleus of the solitary tract medial partcontraSolM3
Rostrocaudal extent of the rostral ventrolateral medullacontraRVLMrc3
Dorsal paragigantocellular nucleuscontraDPGi-0.5
Pre Boetzinger complexcontraPrBo-0.5
Substantia innominatacontraSI0.5
Lateral preoptic areacontraLPO0.5
Medial preoptic areacontraMPA0.5
Lateral hypothalamic areacontraLH2
Medial portion of the basal lateral hypothalamuscontraBLHme2
Posterolateral hypothalamuscontraPLHY-0.5
Anterior hypothalamic areacontraAHA0.5
Dorsal hypothalamic areacontraDA1
Dorsomedial hypothalamic nucleus [Medial zone]contraDM1
Posterior hypothalamic areacontraPHA1
Ventromedial hypothalamic nucleuscontraVMH0.5
Arcuate nucleuscontraArc1
Paraventricular hypothalamic nucleus lateral parvocellular partcontraLPPa2
Paraventricular hypothalamic nucleuscontraPa1
Paraventricular hypothalamic nucleus rostral partcontraPaRo0.5
Zona incertacontraZI2
Basolateral amygdaloid nucleuscontraBL0
Bed nucleus of the stria terminaliscontraBST0.5
Bed nucleus of the stria terminalis lateral divisioncontraBSTL0.5
Bed nucleus of the stria terminalis ventral partcontraBNSTv0.5
Central amygdaloid nucleuscontraCe1
Frontal cortex area 2contraFr2-0.5
Perirhinal cortexcontraA35-0.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Forelimb motor cortexcontraFMCx-0.5
Whiskers motor cortexcontraWMCx-0.5
Primary somatosensory cortex face regioncontraS1FR-0.5
Medial dysgranular cortexcontraMdyC-0.5
Cervical segment 6contraCS62
Cervical segment 7contraCS72
Cervical segment 8contraCS82
Lumbar segment 6contraL64
Sacral segment 1contraSa14
Sacral segment 2contraSa24
Central grayipsiCG2
Periaqueductal grayipsiPAG-0.5
Lateral periaqueductal grayipsiLPAG-0.5
Periaqueductal gray rostrolateral partipsiPAGRL0.5
Ventrolateral periaqueductal grayipsiVLPAG-1
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Substantia nigra reticular part caudal tieripsiSNRca2
Medial cerebellar nucleusipsiMed1
Locus coeruleusipsiLC-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt1
Area postremaipsiAP-0.5
Hypoglossal nucleusipsi12S-0.5
Medial vestibular nucleusipsiMVe2
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract intermediate partipsiSolIM3
Nucleus of the solitary tract interstitial partipsiSoli3
Medial part of the lateral subnucleus of the solitary tractipsiSolLMe3
Nucleus of the solitary tract medial partipsiSolM3
Dorsal raphe nucleus caudal partipsiDRC1
Inferior oliveipsiIO-2
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Pre Boetzinger complexipsiPrBo-0.5
Basal forebrainipsiBAF1
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS0
Basal nucleus MeynertipsiB-0.5
Substantia innominataipsiSI1
Medial preoptic areaipsiMPA1
Magnocellular preoptic nucleusipsiMCPO1
Lateral hypothalamic areaipsiLH4
Medial portion of the basal lateral hypothalamusipsiBLHme2
Posterolateral hypothalamusipsiPLHY-0.5
Medial zoneipsiMHA-0.5
Anterior hypothalamic areaipsiAHA1
Dorsal hypothalamic areaipsiDA3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic areaipsiPHA3
Ventromedial hypothalamic nucleusipsiVMH0.5
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa2
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus rostral partipsiPaRo1
Retrochiasmatic areaipsiRCh2
Reuniens thalamic nucleusipsiRe-3
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt-0.5
Zona incertaipsiZI4
Nucleus of the fields of ForelipsiF1
Zona incerta caudal partipsiZIC1
Zona incerta magnocellular partipsiZIMag2
Dorsal funiculusipsidfu3
Basolateral amygdaloid nucleusipsiBL0
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Bed nucleus of the stria terminalis ventral partipsiBNSTv1
Central amygdaloid nucleusipsiCe3
Medial amygdaloid nucleusipsiMe0
Deep gray matter of the temporal association cortex 1ipsiTeAdL3
Forelimb motor cortexipsiFMCx-2
Caudal forelimb motor areaipsiCFMA-2
Lateral part of the granular cortex of forelimb motor regionsipsiLFMCx-2
Primary visual cortexipsiV1-0.5
Secondary visual cortexipsiV2-0.5
Precommissural nucleusipsiPrC0.5
Ependymocytes of 4th ventricleipsi4Vepc-0.5
Deep dorsal horn C1ipsiDDHC13
Superficial dorsal horn C1ipsiSDHC13
Cervical segment 6ipsiCS62
Cervical segment 7ipsiCS72
Cervical segment 8ipsiCS82
Deep dorsal horn C8ipsiDDHC8-1
Lumbar segment 6ipsiL64
Sacral segment 1ipsiSa14
Sacral segment 2ipsiSa24
Sternomastoid nerveipsismn-0.5
Superior laryngeal nerveipsisLn-2
Superior laryngeal nerve ramus internusipsisLnri-0.5
Hindpaw skincontraOrgHPS-0.5
Hindpaw skinipsiOrgHPS-0.5
KidneyipsiOrgsKid-0.5
Wall of larynxipsiOrgWLary-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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