University of Rostock

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Rat connectome



Superior colliculus lateral part left


Abbreviation
SCL
Color       
Superior regionsSuperior colliculus

SynonymsAbbr.Language
Superior colliculus lateral partSCL 
Lateral superior colliculus Eng
Lateral part of superior colliculus Eng

SubregionsSide
Superior colliculus lateral part layersleft
Superior colliculus lateralmost edgeleft
Rostrocaudal extent of the superior colliculus lateral partleft

Output to

NameSideAbbr.WeightDetails
Superior colliculus caudal part deep layersipsicSCdL3
Substantia nigra A9 dorsolateral partipsiSNdL-0.5
Lateral tegmental nucleusipsiLTN1
Border of the cerebral peduncleipsiBPePo-0.5
Dorsal reticular formationipsiDRF1
Medial reticular formationipsiRFm1
Lateral reticular nucleusipsiLRt3
Parvicellular reticular nucleusipsiPCRt3
Facial nucleusipsi71
Facial nucleus intermediate partipsi7i3
Facial nucleus dorsal intermediate subnucleusipsi7DI3
Mesencephalic trigeminal nucleusipsiMe50.5
Trigeminal sensory nuclear complexipsiTSNC3
Principal sensory trigeminal nucleusipsiPr5-0.5
Principal sensory trigeminal nucleus ventromedial partipsiPr5vm-0.5
Spinal trigeminal nucleus caudal partipsiSp5C0
Spinal trigeminal nucleus interpolar partipsiSp5I1
Spinal trigeminal nucleus interpolar part caudalipsiSp5Ic0
Spinal trigeminal nucleus interpolar part medial partipsiSp5IM1
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Dorsal part of spinal trigeminal nucleus oral partipsiSp5OD-0.5
Spinal trigeminal nucleus oral part central partipsiSp5OC-0.5
Spinal trigeminal nucleus rostral partipsiSp5ncR0
Lateral hypothalamic areaipsiLH1
Suprachiasmatic nucleus ventral divisionipsiSChv2
ThalamusipsiT3
Anteroventral thalamic nucleusipsiAV3
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF-0.5
Parafascicular thalamic nucleus lateral partipsiPFL3
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh1
Submedius thalamic nucleusipsiSub1
Midline group of the dorsal thalamusipsiMTN3
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus middle divisionipsiPVMiD1
Paraventricular thalamic nucleus posterior partipsiPVP1
Reuniens thalamic nucleusipsiRe3
Ventromedial thalamic nucleus caudal partipsiVMc2.5
Forel field H2ipsiFFH23
Zona incerta dorsal partipsiZID2
Zona incerta ventral partipsiZIV3
Subthalamic nucleusipsiSTh-0.5
Subthalamic nucleus dorsolateral partipsiSThDL2
Subthalamic nucleus middle partipsiSThm1
Lateral tegmental nucleuscontraLTN2
Dorsal reticular formationcontraDRF2
Medial reticular formationcontraRFm2
Parvicellular reticular nucleuscontraPCRt2
Facial nucleuscontra72
Facial nucleus intermediate partcontra7i4
Facial nucleus dorsal intermediate subnucleuscontra7DI4
Mesencephalic trigeminal nucleuscontraMe50.5
Trigeminal sensory nuclear complexcontraTSNC1
Principal sensory trigeminal nucleus ventral partcontraPr5v2
Central medial thalamic nucleuscontraCM1
Centrolateral thalamic nucleuscontraCL1
Paracentral thalamic nucleuscontraPC1
Parafascicular thalamic nucleus lateral partcontraPFL1
Parafascicular thalamic nucleus medial partcontraPFM1
Rhomboid thalamic nucleuscontraRh1
Submedius thalamic nucleuscontraSub0.5
Paraventricular thalamic nucleus anterior partcontraPVA1
Paraventricular thalamic nucleus middle divisioncontraPVMiD1
Paraventricular thalamic nucleus posterior partcontraPVP1
Reuniens thalamic nucleuscontraRe1
Spinal cord layer 4 C1contraSCL4C1-0.5
Spinal cord layer 7 C1contraSCL7C1-0.5
Spinal cord layer 8 C1contraSCL8C1-0.5
Spinal cord layer 9 C1contraSCL9C1-0.5
Spinal cord layer 4 C2contraSCL4C2-0.5
Spinal cord layer 7 C2contraSCL7C2-0.5
Spinal cord layer 8 C2contraSCL8C2-0.5
Spinal cord layer 9 C2contraSCL9C2-0.5
Spinal cord layer 4 C3contraSCL4C3-0.5
Spinal cord layer 7 C3contraSCL7C3-0.5
Spinal cord layer 8 C3contraSCL8C3-0.5
Spinal cord layer 9 C3contraSCL9C3-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 8 C4contraSCL8C4-0.5
Spinal cord layer 9 C4contraSCL9C4-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layer 8 C5contraSCL8C5-0.5
Spinal cord layer 9 C5contraSCL9C5-0.5

Input from

NameSideAbbr.WeightDetails
Substantia nigra A9 dorsolateral partipsiSNdL-0.5
Substantia nigra compact partipsiSNC1.5
Substantia nigra lateral partipsiSNL1.5
Substantia nigra reticular partipsiSNR2.5
Rostral half of the intermediate part of the substantia nigra reticular partipsirhiSNR-0.5
Substantia nigra reticular part dorsolateral tier caudal halfipsiSNRDLc2
Rostral half of the lateral part of the Substantia nigra reticular partipsiSNRLrh-0.5
Substantia nigra rostrocaudal partipsiSNrc2.5
Pontine reticular nucleus lateral partipsiPRNL-0.5
Cuneiforme nucleusipsiCnF1
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleus ventral partipsiLRtV3
Intertrigeminal nucleusipsiI53
Principal sensory trigeminal nucleusipsiPr51
Spinal trigeminal nucleusipsiSp5nc1
Spinal trigeminal nucleus caudal partipsiSp5C1
Spinal trigeminal nucleus interpolar partipsiSp5I1
Spinal trigeminal nucleus oral partipsiSp5O1
Dorsal column nucleiipsiDCN1
Zona incertaipsiZI-0.5
Zona incerta ventral partipsiZIV2
Retina temporal partipsiRETt-0.5
Superior part of the retinaipsiRETS-0.5
Retina inferior partipsiRETi-0.5
Retrosplenial cortex rostrocaudalipsiRSrc-0.5
Rostral retrosplenial cortexipsiRRS-0.5
Medial agranular prefrontal cortex layer 5ipsiAGmL53
Posteromedial barrel subfield C2 rostral partipsiPMBSFC2r3
Posteromedial barrel subfield D1 rostral partipsiPMBSFD1r3
Posteromedial barrel subfield D2 rostral partipsiPMBSFD2r3
Rostral part of the posteromedial barrel subfield D5ipsiPMBSFD5r3
Primary somatosensory cortex layer 5ipsiS1L53
Primary visual cortex lateral part layer 5ipsiV1LaL52
Substantia nigra rostrocaudal partcontraSNrc1
Parvicellular reticular nucleuscontraPCRt3
Intertrigeminal nucleuscontraI54
Spinal trigeminal nucleuscontraSp5nc2
Spinal trigeminal nucleus caudal partcontraSp5C1
Spinal trigeminal nucleus interpolar partcontraSp5I3
Spinal trigeminal nucleus oral partcontraSp5O3
Medial agranular prefrontal cortex layer 5contraAGmL50
Primary somatosensory cortex layer 5contraS1L50

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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