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Rat connectome



Intertrigeminal nucleus left


Abbreviation
I5
Color       
Superior regionsNuclei of the trigeminal complex

SynonymsAbbr.Language
Intertrigeminal areaI5Eng
Intertrigeminal area Eng
Intertrigeminal nucleusI5Eng
Intertrigeminal region  
Intertrigeminal regionI5Eng

SubregionsSide
Intertrigeminal nucleus caudal partleft
Intertrigeminal nucleus medial partleft
Intertrigeminal nucleus rostral partleft
Apneic region of the intertrigeminal nucleusleft

Output to

NameSideAbbr.WeightDetails
Superior colliculus lateral partipsiSCL3
Rostrocaudal extent of the superior colliculus lateral partipsiSCLrce1
Optic nerve layer of the superior colliculusipsiOp0
Superficial gray layer of the superior colliculusipsiSuG0
Intermediate gray layer of the superior colliculusipsiInG1
Deep gray layer of the lateral superior colliculusipsiDpLG1
Mesencephalic reticular formationipsiMRF3
Lateral parabrachial nucleus internal partipsiLPBI3
Boetzinger complexipsiBo2
Facial nucleusipsi7-0.5
Facial nucleus lateral subnucleusipsi7L3
Facial nucleus dorsal intermediate subnucleusipsi7DI-0.5
Hypoglossal nucleusipsi12S1
Hypoglossal motor nucleusipsi12M-0.5
Midline part of the hypoglossal nucleusipsi12SMM1
Hypoglossal nucleus rostral partipsi12Sr1
Caudal part of the hypoglossal nucleusipsi12SC1
Intertrigeminal nucleusipsiI5-0.5
Juxtatrigeminal areaipsiJx5-0.5
Supratrigeminal nucleusipsiSu5-0.5
Motor trigeminal nucleusipsiMo53
Motor root of the trigeminal nerveipsim52
Motor trigeminal nucleus dorsolateral partipsiMo5DL3
Motor trigeminal nucleus jaw closing componentipsiMo5jcc3
Motor trigeminal nucleus jaw opening componentipsiMo5joc0.5
Midline apneic siteipsiMAS2
Ventral respiratory group caudal partipsiVCReG2
Retrotrapezoid nucleusipsiRTN0
Rostral ventral respiratory groupipsiRVRG2
Orofacial motor cortexipsiOFCx-0.5
Cervical segment 5ipsiCS51
Lumbar segment 2ipsiL22
Superior colliculus lateral partcontraSCL4
Rostrocaudal extent of the superior colliculus lateral partcontraSCLrce3
Intermediate gray layer of the superior colliculuscontraInG3
Deep gray layer of the lateral superior colliculuscontraDpLG3
Facial nucleus lateral subnucleuscontra7L2
Hypoglossal nucleuscontra12S1
Midline part of the hypoglossal nucleuscontra12SMM-0.5
Hypoglossal nucleus rostral partcontra12Sr-0.5
Caudal part of the hypoglossal nucleuscontra12SC-0.5
Intertrigeminal nucleuscontraI5-0.5
Juxtatrigeminal areacontraJx5-0.5
Supratrigeminal nucleuscontraSu5-0.5
Motor trigeminal nucleuscontraMo51
Motor trigeminal nucleus jaw closing componentcontraMo5jcc0.5
Motor trigeminal nucleus jaw opening componentcontraMo5joc0.5
Midline apneic sitecontraMAS2
Retrotrapezoid nucleuscontraRTN0
Ventral posterior thalamic nucleus parvicellular partcontraVPPC0.5
Ventral posteromedial thalamic nucleus ventromedial partcontraVPMVM0.5
Ventral posteromedial thalamic nucleus corecontraVPMc1
Ventral posteromedial thalamic nucleus core lingualcontraVPMcL0.5
Ventral posteromedial thalamic nucleus core infraorbitalcontraVPMci0
Ventral posteromedial thalamic nucleus caudo-ventromedial edgecontraVPMcvm1
Cervical segment 5contraCS50.5
Lumbar segment 2contraL20.5
Submandibular ganglionipsiAutoGsm2
Hypoglossal nerveipsi12P2
Mandibulary nerve plexusipsi5V3px0
Mylohyoid nerveipsimyhy0
Intrinsic lingual musculatureipsiOrgOCTmusci-10
Submandibular glandipsiOrgsSubg-10
Musculus masseteripsiMuscMass1
Styloglossus muscle systemipsiMuscStyG-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Red nucleus dorsalipsiRDO-0.5
Substantia nigra reticular partipsiSNR2
Intermediate reticular nucleusipsiIRt-0.5
Mesencephalic reticular formationipsiMRF3
Pontine reticular nucleus caudal partipsiPNC-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Medullary reticular nucleusipsiMdD0
Parvicellular reticular nucleusipsiPCRt-0.5
Parvicellular reticular nucleus alpha partipsiPCRtA-0.5
Intertrigeminal nucleusipsiI5-0.5
Juxtatrigeminal areaipsiJx5-0.5
Supratrigeminal nucleusipsiSu5-0.5
Mesencephalic trigeminal nucleusipsiMe5-0.5
Mesencephalic trigeminal nucleus rostral partipsiMe5R3
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp3
Motor trigeminal nucleusipsiMo5-0.5
Principal sensory trigeminal nucleusipsiPr5-0.5
Principal sensory trigeminal nucleus dorsal partipsiPr5D3
Spinal trigeminal nucleusipsiSp5nc-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Dorsomedial portion of the spinal trigeminal nucleus oral partipsiSp5ODM3
Peritrigeminal zoneipsiP5-0.5
Medial peritrigeminal areaipsiMP5-0.5
Trigeminal ganglionipsi5Gn1
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract intermediate partipsiSolIM1
Nucleus of the solitary tract interstitial partipsiSoli1
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract medial partipsiSolM1
Nucleus of the solitary tract rostral partipsiSolro-0.5
Ventral part of the rostral nucleus of the solitary tractipsiSolroV-0.5
Nucleus of the solitary tract rostrocentralipsiSolroc-0.5
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Retrotrapezoid nucleusipsiRTN3
Caudal retrotrapezoid nucleusipsiRTNc-0.5
Lateral hypothalamic areaipsiLH-0.5
Basolateral amygdaloid nucleusipsiBL0
Basomedial amygdaloid nucleusipsiBM0
Central amygdaloid nucleusipsiCe-0.5
Medial amygdaloid nucleusipsiMe0
Parasubthalamic nucleusipsiPSTh-0.5
Agranular insular cortexipsiAI2
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Middle part of the caudal one-third of the dysgranular insular cortexipsiDIvCotMi1
Caudal part of the caudal one-third of the dysgranular insular cortexipsiDIvCotC1
Rostral two-thirds of the dysgranular insular cortexipsiRDIrtt1
Caudal part of the caudal one-third of the granular insular cortexipsiGICotC1
Middle part of the caudal one-third of the granular insular cortexipsiGICotM1
Rostral two-thirds of the granular insular cortexipsiRttGI1
Mid-dorsal peduncular cortexipsiMiDP1
Lateral agranular prefrontal cortexipsiAGl1
Rostral part of lateral agranular prefrontal cortexipsiAGlr3
Jaw movement motor cortexipsiJMCx2
Medial agranular prefrontal cortexipsiAGm1
Medial agranular prefrontal cortex rostral partipsirAGm2
Primary somatosensory cortex rostral partipsiS1r0.5
Primary somatosensory cortex rostral most partipsiS1rm1
Central graycontraCG3
Red nucleuscontraR3
Red nucleus dorsalcontraRDO-0.5
Red nucleus magnocellular partcontraRMC-0.5
Intermediate reticular nucleuscontraIRt-0.5
Mesencephalic reticular formationcontraMRF3
Pontine reticular nucleus caudal partcontraPNC-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Parvicellular reticular nucleus alpha partcontraPCRtA-0.5
Intertrigeminal nucleuscontraI5-0.5
Juxtatrigeminal areacontraJx5-0.5
Supratrigeminal nucleuscontraSu5-0.5
Mesencephalic trigeminal nucleuscontraMe5-0.5
Motor trigeminal nucleuscontraMo5-0.5
Principal sensory trigeminal nucleuscontraPr5-0.5
Principal sensory trigeminal nucleus dorsal partcontraPr5D1
Spinal trigeminal nucleus interpolar partcontraSp5I-0.5
Spinal trigeminal nucleus oral partcontraSp5O-0.5
Peritrigeminal zonecontraP5-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract intermediate partcontraSolIM1
Nucleus of the solitary tract interstitial partcontraSoli0.5
Nucleus of the solitary tract lateral partcontraSolL0.5
Medial part of the lateral subnucleus of the solitary tractcontraSolLMe1
Nucleus of the solitary tract medial partcontraSolM0.5
Retrotrapezoid nucleuscontraRTN1
Lateral hypothalamic areacontraLH-0.5
Cerebral peduncle basal partcontracp-2
Central amygdaloid nucleuscontraCe-0.5
Parasubthalamic nucleuscontraPSTh-0.5
Agranular insular cortexcontraAI3
Middle part of the caudal one-third of the dysgranular insular cortexcontraDIvCotMi1
Caudal part of the caudal one-third of the dysgranular insular cortexcontraDIvCotC1
Rostral two-thirds of the dysgranular insular cortexcontraRDIrtt1
Caudal part of the caudal one-third of the granular insular cortexcontraGICotC1
Middle part of the caudal one-third of the granular insular cortexcontraGICotM1
Rostral two-thirds of the granular insular cortexcontraRttGI1
Lateral agranular prefrontal cortexcontraAGl2
Rostral part of lateral agranular prefrontal cortexcontraAGlr2
Jaw movement motor cortexcontraJMCx3
Medial agranular prefrontal cortexcontraAGm0.5
Medial agranular prefrontal cortex rostral partcontrarAGm1
Primary somatosensory cortex rostral most partcontraS1rm1.5
TongueipsiOrgOCT-10
Intervibrissal furipsiiVFu0
Anterior digastricus muscleipsiMuscADig-10
Posterior digastricus muscleipsiMuscPDig-10
Genioglossus muscleipsiMuscGenioG-10
Geniohyoid muscleipsiMuscGenio-10
Musculus masseteripsiMuscMass-0.5
Temporal muscleipsiMuscT-10
Pterygoid muscleipsiMuscPterygo-10
Mylohyoid muscleipsiMuscMyhy-10
Styloglossus muscle systemipsiMuscStyG-10
Buccinator muscleipsiMuscBucc-10
PlatysmaipsiMuscPla-10
Zygomatic muscleipsiMuscZygo-10
Hyoglossus muscleipsiMuscHyo-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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