University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Spinal cord layer 9 C4 left


Abbreviation
SCL9C4
Color       
Superior regionsVentral horn C4

SynonymsAbbr.Language
Spinal cord layer 9 C4SCL9C4Eng

Output to

NameSideAbbr.WeightDetails
Lateral periaqueductal grayipsiLPAG1
Cerebellar lobule 4ipsiCERL41
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Gigantocellular reticular nucleusipsiGi-0.5
Raphe pallidus nucleusipsiRPa1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Lateral group of the dorsal thalamusipsiLAT0
Ventrobasal complexipsiVB1
Medial thalamic zoneipsiMTZ0
Spinothalamic tractipsistt-2
Cervical segment 7ipsiCS7-1
Spinal cord layers T2ipsiSCLT20
Lumbar segmentsipsiLSeg0
Spinal cord layer 9 L1ipsiSCL9L12
Spinal cord layer 9 L2ipsiSCL9L22
Spinal cord layer 9 L3ipsiSCL9L32
Periaqueductal graycontraPAG-0.5
Cerebellar lobule 4contraCERL41.5
Cerebellar lobule 5contraCERL51.5
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Mesencephalic reticular formationcontraMRF-0.5
Parabrachial nucleuscontraPB-0.5
Raphe pallidus nucleuscontraRPa1
Centrolateral thalamic nucleuscontraCL-0.5
Lateral group of the dorsal thalamuscontraLAT0
Posterior thalamic nuclear groupcontraPo-0.5
Submedius thalamic nucleuscontraSub1
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Intralaminar nucleicontraILN-0.5
Medial thalamic zonecontraMTZ0
Spinothalamic tractcontrastt-2
Ventral funiculuscontravf-2
Ventrolateral funiculuscontravLF-2
Cervical segment 7contraCS7-1
Spinal cord layers T2contraSCLT20
Lumbar segmentscontraLSeg0
Spinal cord layer 9 L1contraSCL9L11
Spinal cord layer 9 L2contraSCL9L21
Spinal cord layer 9 L3contraSCL9L31
Ventromedial gray substance at the level of the lumbal segment 4contraL4vmg3
Superior cervical ganglionipsiAutoSCeG-0.5
Median nerveipsimen-0.5
Musculocutaneous nerveipsimuscut-2
Phrenic nerveipsiphren-0.5
Radial nerveipsirad-2
Deep muscle branch of the radial nerveipsiraddm2
Ulnar nerveipsiuln-0.5
Suprascapular nerveipsiPNSLsc-2
Subscapular nerveipsiPNSLscn-2
Lateral anterior thoracic nerveipsiPNSLatn-2
Median nervecontramen-0.5
Ulnar nervecontrauln-0.5
Cervical oesophagusipsiOrgsOesC2
Cervical oesophaguscontraOrgsOesC2
DiaphragmaipsiMuscDia-0.5
Biceps brachii muscleipsiMuscFxFoBB-0.5
Splenius capitis muscleipsiMuscSpCa-0.5
Anterior supraclavicular muscleipsiMuscASC-0.5
Posterior supraclavicular muscleipsiMuscPSC-0.5
Middle supraclavicular muscleipsiMuscMSC-0.5
Scalene muscleipsiMuscSca-0.5
Trachea sideipsiOrgsTras2
Trachea sidecontraOrgsTras1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Laterodorsal tegmental nucleusipsiLDTg-0.5
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Magnocellular reticular nucleusipsiNRMC-0.5
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO0.5
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Subcoeruleus nucleusipsiSubC3
Boetzinger complexipsiBo0
Dorsal part of spinal trigeminal nucleus oral partipsiSp5OD-0.5
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Raphe magnus nucleusipsiRMg-0.5
Rostral ventrolateral medullaipsiRVLM3
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Dorsal root ganglion C4ipsiDRGC4-0.5
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-0.5
Spinal cord layer 3 T1ipsiSCL3T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Spinal cord layer 2 T1ipsiSCL2T1-0.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Superior colliculus lateral partcontraSCL-0.5
Locus coeruleuscontraLC2
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Medial reticular formationcontraRFm-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Dorsal part of spinal trigeminal nucleus oral partcontraSp5OD-0.5
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Forelimb motor cortexcontraFMCx3
Forelimb motor cortex layer 5contraFMCxL5-0.5
Primary somatosensory cortexcontraS11
Primary somatosensory cortex forelimb regioncontraS1FL1
Phrenic nerveipsiphren-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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