University of Rostock

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Rat connectome



Ventral horn C4 left


Abbreviation
VHC4
Color       
Superior regionsSpinal cord layers C4

SynonymsAbbr.Language
Ventral horn C4VHC4Eng

SubregionsSide
Base of ventral horn C4left
Dorsolateral motor nuclei of the ventral horn C4left
Dorsomedial motor nuclei C4left
Intermediate zone C4left
Intermeditae zone of ventral horn C4left
Interneuron groups of layer 9 C4left
Motoneuron groups of layer 9 C4left
Spinal cord layer 9 C4left
Ventromedial motor nuclei of the ventral horn C4left
Medial ventral horn C4left
Ventral horn C4 dorsal partleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Tegmental areaipsiTGA-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Anterior lobeipsiAnL2
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF-0.5
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus magnocellular partipsiLRtMC3
Lateral reticular nucleus parvicellular partipsiLRtPC1
Lateral reticular nucleus subtrigeminal partipsiLRtS52
Spinal accessory nerveipsiSAN3
Nucleus of the solitary tractipsiSol-0.5
Dorsal column nucleiipsiDCN2
Retrotrapezoid nucleusipsiRTN1
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Submedius thalamic nucleusipsiSub1.5
Lumbar segment 1ipsiL1-1
Central graycontraCG-0.5
Tegmental areacontraTGA-0.5
Cuneiforme nucleuscontraCnF-0.5
Caudal part of the lateral reticular nucleuscontraCaLRt3
Caudal half of the lateral reticular nucleuscontraChLRt2
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC1
Lateral reticular nucleus rostral partcontraLRtr1
Lateral reticular nucleus subtrigeminal partcontraLRtS51
Retrotrapezoid nucleuscontraRTN0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Submedius thalamic nucleuscontraSub3
Central amygdaloid nucleuscontraCe0.5
Brachial plexusipsibraPlex-2
Facial nerveipsi7fn-0.5
Phrenic nerveipsiphren-0.5
Cervical phrenic nerveipsiphrenC-0.5
Radial nerveipsirad-2
Biceps brachii muscleipsiMuscFxFoBB-0.5
Trapezius muscleipsiMuscTrap-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Central tegmental fieldipsiTGAC3
Dorsal tegmental nucleus lateral partipsiDLTN3
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1
Interposed cerebellar nucleiipsiICN2
Lateral cerebellar nucleusipsiCERL2
Medial cerebellar nucleusipsiMed3
A5 noradrenaline cellsipsiA51.5
A7 noradrenaline cellsipsiA71.5
Locus coeruleusipsiLC2
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Parapyramidal nucleusipsiPPy3
Caudoventrolateral reticular nucleusipsiCVLR1
Dorsolateral reticular formationipsiDLRF-0.5
Intermediate reticular nucleusipsiIRt1
Intermediate reticular nucleus dorsomedial partipsiIRtDM3
Intermediate reticular nucleus ventrolateral partipsiIRtvL1
Rostroventrolateral reticular nucleusipsiRVL1
Mesencephalic reticular formationipsiMRF0.5
Parabrachial nucleusipsiPB-0.5
Rostral two-thirds of the Koelliker Fuse nucleusipsiKFrtt-0.5
Caudal one-third of the Koelliker Fuse nucleusipsiKFcot-0.5
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe2
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA2
Gigantocellular reticular nucleus ventral partipsiGiV3
Lateral reticular nucleusipsiLRt3
Caudal pole of the lateral reticular nucleusipsiCpLRt-0.5
Medial medullary reticular nucleusipsiMMdD3
Medial subnucleus reticularis ventralisipsiMSRV1
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Medullary reticular nucleus ventral partipsiMdV3
Subcoeruleus nucleusipsiSubC1.5
Ambiguus nucleusipsiAmb3
Ambiguus nucleus compact partipsiAmbC-0.5
Ambiguus nucleus external formationipsiAmbEx-0.5
Ambiguus nucleus loose partipsiAmbL-0.5
Ambiguus nucleus semicompact formationipsiAmbSeC-0.5
Dorsomedial nucleus ambiguusipsiAmbDM-0.5
Ventrolateral nucleus ambiguusipsiAmbVL-0.5
Area postremaipsiAP-0.5
Boetzinger complexipsiBo-0.5
Spinal vestibular nucleusipsiSpVe3
Superior vestibular nucleusipsiSuVe3
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus rostral partipsiMVeR-0.5
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tract ventrolateral partipsiSolVL3
Raphe nucleiipsiRAN3
Caudal raphe nucleiipsiRANc-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
Ventral lateral medulla oblongataipsiMVL-0.5
Ventral respiratory groupipsiVReG3
Rostral part of the ventral respiratory groupipsiVReGro3
Bulbospinal neurons of the ventral respiratory groupipsiVReGbs-0.5
Propriobulbar neurons of the ventral respiratory groupipsiVReGpb-0.5
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi3
Pre Boetzinger complexipsiPrBo-0.5
Retroambiguus nucleusipsiRAmb1
Dorsomedial aspect of the retroambiguus nucleusipsiRAmbdm1
Retrotrapezoid nucleusipsiRTN-0.5
Lateral hypothalamic areaipsiLH1
Midlateral posterior hypothalamic areaipsiPHAmL0
Paraventricular nucleus of the hypothalamus magnocellular division posterior magnocellular partipsiPaAMp-0.5
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD-0.5
Paraventricular hypothalamic nucleus medial parvocellular part dorsal partipsiMPPap-0.5
Paraventricular hypothalamic nucleus medial parvocellular part ventral partipsiMPPav-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular nucleus medial partipsiPame-0.5
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus lateral partipsiPFL1
Zona incertaipsiZI-0.5
Dorsal root ganglion C2ipsiDRGC21
Dorsal root ganglion C4ipsiDRGC41
Dorsal root ganglion C7ipsiDRGC7-0.5
Intermediolateral cell column T1ipsiIMLT10
Intermediolateral cell column T2ipsiIMLT20
Intermediolateral cell column T3ipsiIMLT30
Intermediolateral cell column T4ipsiIMLT40
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Central tegmental fieldcontraTGAC3
Dorsal tegmental nucleus lateral partcontraDLTN3
Pedunculopontine tegmental nucleuscontraPPTg3
Interstitial nucleus of CajalcontraInC0.5
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA71
Locus coeruleuscontraLC2
Caudoventrolateral reticular nucleuscontraCVLR1
Intermediate reticular nucleuscontraIRt1
Rostroventrolateral reticular nucleuscontraRVL1
Mesencephalic reticular formationcontraMRF0.5
Parabrachial nucleus medialcontraPBnMe2
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Gigantocellular reticular nucleus ventral partcontraGiV0.5
Lateral reticular nucleuscontraLRt3
Medial medullary reticular nucleuscontraMMdD3
Medial subnucleus reticularis ventraliscontraMSRV1
Medullary reticular nucleus ventral partcontraMdV3
Subcoeruleus nucleuscontraSubC1
Ambiguus nucleuscontraAmb1
Spinal vestibular nucleuscontraSpVe3
Superior vestibular nucleuscontraSuVe3
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus rostral partcontraMVeR-0.5
Lateral vestibular nucleuscontraLVe3
Raphe nucleicontraRAN3
Nucleus interfascicularis hypoglossicontraNIFH-0.5
Paragigantocellular reticular nucleuscontraPGi1
Lateral paragigantocellular nucleuscontraLPGi3
Retroambiguus nucleuscontraRAmb1
Retrotrapezoid nucleuscontraRTN-0.5
Paraventricular hypothalamic nucleus parvicellular division dorsal partcontraPaPcD-0.5
Paraventricular hypothalamic nucleus medial parvocellular part dorsal partcontraMPPap-0.5
Paraventricular hypothalamic nucleus medial parvocellular part ventral partcontraMPPav-0.5
Paraventricular nucleus of the hypothalamus magnocellular division posterior magnocellular partcontraPaAMp-0.5
Paraventricular nucleus medial partcontraPame-0.5
Parafascicular thalamic nucleuscontraPF1
Parafascicular thalamic nucleus lateral partcontraPFL1
Cerebral cortexcontraCEC1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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