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Rat connectome



Spinal cord layer 9 L5 left


Abbreviation
SCL9L5
Color       
Superior regionsVentral horn L5

SynonymsAbbr.Language
Spinal cord layer 9 L5SCL9L5Eng

SubregionsSide
Spinal cord layer 9 L5 medial partleft
Spinal cord layer 9 L5 ventrolateral motor columnleft
Spinal cord layer 9 L5 dorsolateral motor columnleft
Spinal cord layer 9 L5 ventral partleft

Output to

NameSideAbbr.WeightDetails
Dorsal periaqueductal grayipsiDPAG0.5
Lateral periaqueductal grayipsiLPAG1
CerebellumipsiCERE-0.5
Cerebellar cortexipsiCERC-0.5
Cerebellar nucleiipsiDCeN-0.5
Anterior interposed nucleusipsiAIN-0.5
Ventromedial reticular formationipsiVMRF-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt0
Lateral vestibular nucleusipsiLVe-0.5
GracileipsiGra-0.5
Inferior oliveipsiIO-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Ventrobasal complexipsiVB1
Ventral spinocerebellar tractipsivsc-2
Anterior commissureipsiac-2
Ventral horn C1ipsiVHC10
Ventral horn C2ipsiVHC20
Ventral horn C3ipsiVHC30
Spinal cord layer 9 L2ipsiSCL9L21
Spinal cord layer 9 L4ipsiSCL9L41
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Dorsal periaqueductal graycontraDPAG1
Lateral periaqueductal graycontraLPAG1
Red nucleuscontraR-0.5
Anterior interposed nucleuscontraAIN-0.5
Superior cerebellar pedunclecontrasucep-2
Ventromedial reticular formationcontraVMRF-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Lateral reticular nucleuscontraLRt1
Lateral vestibular nucleuscontraLVe-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Lateral funiculuscontralf-2
Lateral agranular prefrontal cortex layer 5contraAGlL5-0.5
Anterior commissurecontraac-2
Ventral horn C1contraVHC10.5
Ventral horn C2contraVHC20.5
Ventral horn C3contraVHC30.5
Medial motoneuron groups of layer 9 L1contraMGL9L1m1
Lateral motoneuron groups of layer 9 L1contraMGL9L1L1
Medial motoneuron groups of layer 9 L3contraMGL9L3m1
Lateral motoneuron groups of layer 9 L3contraMGL9L3L1
Ventromedial gray substance at the level of the lumbal segment 4contraL4vmg3
Peronal nerveipsiperonal-0.5
Common peronal nerveipsicperonal-2
Sural nerveipsisural3
Hamstring nerveipsihamstri-0.5
Medial gastrocnemic nerveipsimegasc-0.5
Pudendal nerveipsipude-2
Sciatic nerveipsisci3
Tibial nerveipsitibial3
Medial gastrocnemius nerveipsimgastrocn3
StomachipsiOrgsStomS-1
Extensor digitorum longusipsiMuscExtDigLong-0.5
Biceps femoris muscleipsiMuscBF3
Posterior head of the biceps femoris muscleipsiMuscPHBF-0.5
Caudofemoralis muscleipsiMuscCFem-0.5
Quadriceps femoris muscleipsiMuscQuadF-0.5
Semimembranosus muscleipsiMuscSemiM-0.5
Semitendinosus muscleipsiMuscSemiten3
Principal head of the semitendinosus muscleipsiMuscPHSemiten-0.5
Hind leg musclesipsiMuscHiLe3
Lower hind leg musclesipsiMuscHiLeL-0.5
Tibialis anterior muscleipsiMuscTA3
Peroneus muscleipsiMuscPero-0.5
Inguinal musclesipsiMuscHiig-0.5
Gluteus maximus muscleipsiMuscHigm3
Gracilis muscle of hindlimbipsiMuscHigr3
Gastrocnemius muscleipsiMuscGC3
Medial gastrocnemius muscleipsiMuscMGC3
Soleus muscleipsiMuscSo3
Bulbospongiosus muscleipsiMuscbsp3
Ischiocavernosus muscleipsiMuscicav-10
Triceps surae muscleipsiMuscTriSu-0.5
Extensor digitorum longus muscleipsiMuscEDL-0.5
Extensor caudalis medialis muscleipsiMuscExCaMe-0.5
Hind foot musclesipsiMuscHF-0.5
Bulbocavernosus musclecontraMuscBCV-0.5
Musculus levator anicontraMuscLevAn-0.5
Triceps surae musclecontraMuscTriSu0

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Lateral part of pontine central grayipsiCGPl-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Dorsal tegmental nucleus lateral partipsiDLTN2
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Parapyramidal nucleusipsiPPy2
Reticular systemipsiRF3
Magnocellular reticular nucleus alpha partipsiNRMCa2
Medial reticular formationipsiRFm-0.5
Paramedian reticular nucleusipsiPMn3
Ventrolateral reticular formationipsiVLRF-0.5
Ventromedial reticular formationipsiVMRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus oral part caudal partipsiPnOc2.5
Pontine reticular nucleus oral part dorsolateral partipsiPnODL2.5
Pontine reticular nucleus oral part lateral partipsiPnOL2.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Pontine reticular nucleus caudal part ventrolateral partipsiPNCvL2.5
Cuneiforme nucleusipsiCnF2.5
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus dorsal partipsiGidp3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus rostral partipsiLRtr2
Medial subnucleus reticularis ventralis caudal partipsiMSRVc1
Medial subnucleus reticularis ventralis rostral partipsiMSRVr1
Medullary reticular nucleus lateral partipsiMdL1
Subcoeruleus nucleusipsiSubC3
Spinal trigeminal nucleus interpolar partipsiSp5I2
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb3
Raphe obscurus nucleus caudal partipsiRObc-0.5
Raphe pallidus nucleusipsiRPa2
Paragigantocellular reticular nucleusipsiPGi2
Lateral paragigantocellular nucleusipsiLPGi-0.5
Retroambiguus nucleusipsiRAmb1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Somatomotoric regions layer 5ipsiSMRL53
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL20
Dorsal root ganglion L3ipsiDRGL30
Dorsal root ganglion L4ipsiDRGL44
Dorsal root ganglion L5ipsiDRGL54
Spinal cord layer 5 L5 mediolateral extentipsiSCL5L5mLe3
Spinal cord layer 6 L5 mediolateral extentipsiSCL6L5mLe3
Spinal cord layer 7 L5 dorsal portionipsiSCL7L5d3
Dorsal root ganglion L6ipsiDRGL62
Locus coeruleuscontraLC1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Reticular systemcontraRF3
Medial reticular formationcontraRFm-0.5
Paramedian reticular nucleuscontraPMn3
Ventromedial reticular formationcontraVMRF-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Subcoeruleus nucleuscontraSubC1
Raphe obscurus nucleuscontraROb3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Somatomotoric regions layer 5contraSMRL53
Dorsal root ganglion L5contraDRGL52
Spinal cord layer 5 L5 mediolateral extentcontraSCL5L5mLe-0.5
Spinal cord layer 6 L5 mediolateral extentcontraSCL6L5mLe-0.5
Spinal cord layer 7 L5 dorsal portioncontraSCL7L5d-0.5
Ventromedial nucleus of lumbar segment 5contraVML53
Hamstring nerveipsihamstri-0.5
Sciatic nerveipsisci1
Lumbar spinal nerve 5ipsispinL5-0.5
Gastrocnemius nerveipsigastrocn-0.5
Hindpaw skinipsiOrgHPS-0.5
Biceps femoris muscleipsiMuscBF-0.5
Tibialis anterior muscleipsiMuscTA-0.5
Gastrocnemius muscleipsiMuscGC-0.5
Extensor caudalis medialis muscleipsiMuscExCaMe2
Musculus extensor caudae lateralisipsiMuscExtLat0.5
Musculus abductor caudae dorsalisipsiMuscAbdCaDo1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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