Department of Anatomy University of Rostock

University of Rostock

Department of Anatomy

Neuroscience Group

Homepage

Staff

neuroVIISAS

Rat connectome

Other connectomes

Neuroimaging

Neurodegeneration

Neuroproteomics

Students

Links

Publications

Rat connectome

Cerebellar nuclei left

Abbreviation	DCeN
Color
Superior regions	Cerebellum

Synonyms	Abbr.	Language
Cerebellar nuclei	DCeN	Eng
Cerebellar nuclear complex		Eng
Intracerebellar nuclei		Eng

Subregions	Side
Caudoventral aspect of the cerebellar nuclei	left
Central cerbellar nuclei	left
Deep cerebellar nuclei	left
Infracerebellar nucleus of Gacek	left
Interstitial cell groups	left
Between nucleus medialis and interposed nucleus	left
Junction between the lateral vestibular nucleus and the anterior interposed nucleus	left
Cerebellar nucleus cell	left

Output to

Name	Side	Abbr.	Weight
Rostromedial tegmental nucleus	ipsi	RMTg	2
Ventral tegmental area A10	ipsi	VTA	1
Lateral tegmental nucleus	ipsi	LTN	1
Cerebellar cortex zebrin postive band P+ 4	ipsi	CERCP+4	-0.5
Cerebellar cortex zebrin postive band P+ 5	ipsi	CERCP+5	-0.5
Copula of the pyramis C1 zone	ipsi	CopC1	3
Cerebellar lobule 3a zone C1	ipsi	CERL3aC1	0
Cerebellar lobule 1 zone A medial aspect	ipsi	CERL1AM	0
Cerebellar lobule 4 zone C1	ipsi	CERL4C1	0
Cerebellar lobule 5 zone A lateral aspect	ipsi	CERL5AL	-0.5
Cerebellar lobule 5 zone B	ipsi	CERL5B	0
Cerebellar lobule 7 zone A lateral aspect	ipsi	CERL7AL	-0.5
Cerebellar lobule 7 zone A medial aspect	ipsi	CERL7AM	0
Cerebellar lobule 8 zone A medial aspect	ipsi	CERL8AM	0
Cerebellar lobule 9a zone A medial aspect	ipsi	CERL9aAM	0
A-zone of the cerebellar cortex	ipsi	CeZA	-0.5
Cerebellar cortex B zones	ipsi	BZCERC	-0.5
Cerebellar cortex C zones	ipsi	CeZC	-0.5
C1-zone of the cerebellar cortex	ipsi	CeZC1	-0.5
C2-zone of the cerebral cortex	ipsi	CeZC2	-0.5
C3-zone of the cerebellar cortex	ipsi	CeZC3	-0.5
Cerebellar cortex D zones	ipsi	CeD	-0.5
Pontine gray	ipsi	PG	1
Pontine nuclei	ipsi	Pn	-0.5
Parvicellular reticular nucleus	ipsi	PCRt	-0.5
Parvicellular reticular nucleus lateral part	ipsi	PCRtl	2
Vestibular ducts	ipsi	vd	1
Raphe magnus nucleus	ipsi	RMg	0
Raphe pallidus nucleus	ipsi	RPa	4
Medulla oblongata lateral part	ipsi	MeObL	2
Inferior olive	ipsi	IO	-0.5
Inferior olive caudal part	ipsi	IOCa	1
Inferior olive posterior part	ipsi	IOpo	1
Thalamus	ipsi	T	1
Rhomboid thalamic nucleus	ipsi	Rh	-0.5
Ventromedial thalamic nucleus caudal part	ipsi	VMc	2
Ventromedial thalamic nucleus caudal two thirds	ipsi	VMctt	2
Parafascicular centre-median complex	ipsi	PFCM	-0.5
Lateral habenular nucleus	ipsi	LHb	1
Ventral lateral geniculate nucleus parvicellular part	ipsi	VLGPC	-0.5
Mesodiencephalic junction	ipsi	MDJ	-0.5
Intermediomedial cell column C1	ipsi	IMMC1	-0.5
Dorsal horn C1	ipsi	DHC1	-0.5
Dorsal horn C2	ipsi	DHC2	-0.5
Lumbar segment 5	ipsi	L5	0
Lumbar segment 6	ipsi	L6	0
Sacral segment 1	ipsi	Sa1	0
Sacral segment 2	ipsi	Sa2	0
Sacral segment 3	ipsi	Sa3	0
Sacral segment 4	ipsi	Sa4	0
Coccygeal segment 1	ipsi	Co1	0
Coccygeal segment 2	ipsi	Co2	0
Coccygeal segment 3	ipsi	Co3	0
Ventral tegmental area A10	contra	VTA	1
Lateral tegmental nucleus	contra	LTN	1
Pontine nuclei	contra	Pn	-0.5
Raphe pallidus nucleus	contra	RPa	4
Inferior olive	contra	IO	3
Inferior olive caudal part	contra	IOCa	2
Inferior olive dorsal nucleus	contra	IOD	3
Inferior olive medial nucleus	contra	IOM	3
Inferior olive posterior part	contra	IOpo	2
Inferior olive principal nucleus	contra	IOPr	3
Centrolateral thalamic nucleus	contra	CL	-0.5
Ventrolateral thalamic nucleus	contra	VL	3
Ventral posterolateral thalamic nucleus anterior part	contra	VPLA	2
Ventral posteromedial thalamic nucleus anterior part	contra	VPMA	2
Ventromedial thalamic nucleus	contra	VM	-0.5
Intralaminar nuclei	contra	ILN	-0.5
Intralaminar nuclei anterior part	contra	ILNA	3
Parafascicular nucleus	contra	PFa	-0.5
Medial part of the posterior group	contra	MPTG	-0.5
Ventral thalamus	contra	VNT	3
Hypoglossal nerve	ipsi	12P	3
Hypoglossal nerve	contra	12P	1
Flexor digitorum muscle	ipsi	MuscFD	3
Biceps femoris muscle	ipsi	MuscBF	3
Tibialis anterior muscle	ipsi	MuscTA	3
Gastrocnemius muscle	ipsi	MuscGC	3

Input from

Name	Side	Abbr.	Weight
Peripeduncular nucleus dorsal and ventral	ipsi	PPdv	3
Peripeduncular nucleus dorsal part	ipsi	PPdo	3
Peripeduncular nucleus ventral part	ipsi	PPv	3
Laterodorsal tegmental nucleus	ipsi	LDTg	0
Pedunculopontine tegmental nucleus	ipsi	PPTg	0
Caudomedial part of the dorsal paraflocculus	ipsi	DPFlcm	-2
Ventral surface of the lateral part of the dorsal paraflocculus	ipsi	DPFlLV	-2
Paraflocculus caudal part	ipsi	PFlC	3
Dorsal part of the ventral paraflocculus	ipsi	PFlvD	-2
Rostral paraflocculus	ipsi	PFlR	3
Ventral surface paramedian lobule	ipsi	PMvs	0
Lateralmost part of the copula of the pyramis	ipsi	LmCop	0
A-zone of the cerebellar cortex	ipsi	CeZA	-0.5
Cerebellar cortex B zones	ipsi	BZCERC	-0.5
Cerebellar cortex C zones	ipsi	CeZC	-0.5
C2-zone of the cerebral cortex	ipsi	CeZC2	-0.5
C3-zone of the cerebellar cortex	ipsi	CeZC3	-0.5
Cerebellar cortex D zones	ipsi	CeD	-0.5
D1-zone of the cerebellar cortex	ipsi	CeZD1	-0.5
D2-zone of the cerebellar cortex	ipsi	CeZD2	-0.5
Purkinje cells of the Purkinje cell layer of the cerebellum	ipsi	PkPC	-0.5
Lateral cerebellar nucleus	ipsi	CERL	0
Locus coeruleus	ipsi	LC	-0.5
Reticulotegmental nucleus of the pons	ipsi	RtTg	3
Pontine nuclei	ipsi	Pn	1
Pontine nuclei dorsolateral part	ipsi	BPNdL	3
Pontine nuclei lateral part	ipsi	BPNL	3
Pontine nuclei peripeduncular part	ipsi	PnPP	3
Pontine nucleus medial part	ipsi	BPNm	2
Pontine nucleus ventral part	ipsi	BPNv	3
Median reticular nucleus	ipsi	RFMED	3
Pontine reticular nucleus	ipsi	PRN	1
Pontine reticular nucleus caudal and pericentral part	ipsi	PRNcp	3
Pontine reticular nucleus caudal part	ipsi	PNC	2
Pontine reticular nucleus pericentral part	ipsi	NRTPp	3
Medial vestibular nucleus	ipsi	MVe	3
Caudal raphe interpositus nucleus	ipsi	CRIP	3
Inferior olive	ipsi	IO	3
Lateral hypothalamic area	ipsi	LH	-0.5
Secondary somatosensory cortex	ipsi	S2	1
Central cervical nucleus C1	ipsi	CeCvC1	-0.5
Central cervical nucleus C2	ipsi	CeCvC2	-0.5
Central cervical nucleus C3	ipsi	CeCvC3	-0.5
Spinal cord layer 9 C7	ipsi	SCL9C7	-0.5
Spinal cord layer 9 C8	ipsi	SCL9C8	-0.5
Spinal cord layer 9 L4	ipsi	SCL9L4	-0.5
Spinal cord layer 9 L5	ipsi	SCL9L5	-0.5
Spinal cord layer 9 L6	ipsi	SCL9L6	-0.5
Laterodorsal tegmental nucleus	contra	LDTg	0
Pedunculopontine tegmental nucleus	contra	PPTg	0
Lateral cerebellar nucleus	contra	CERL	0
Reticulotegmental nucleus of the pons	contra	RtTg	-0.5
Pontine nuclei	contra	Pn	1
Pontine nuclei dorsolateral part	contra	BPNdL	3
Pontine nuclei lateral part	contra	BPNL	3
Pontine nuclei peripeduncular part	contra	PnPP	3
Pontine nucleus medial part	contra	BPNm	2
Pontine nucleus ventral part	contra	BPNv	3
Pontine reticular nucleus	contra	PRN	1
Inferior olive	contra	IO	-0.5
Primary somatosensory cortex	contra	S1	0.5
Secondary somatosensory cortex	contra	S2	2
Spinal cord layers C2	contra	SCLC2	-0.5
Spinal cord layers C3	contra	SCLC3	-0.5

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong