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Rat connectome



Spinal cord layer 9 L4 left


Abbreviation
SCL9L4
Color       
Superior regionsVentral horn L4

SynonymsAbbr.Language
Spinal cord layer 9 L4SCL9L4Eng

SubregionsSide
Spinal cord layer 9 L4 musculus soleus motoneuron poolleft
Spinal cord layer 9 L4 musculus tibialis anterior motoneuron poolleft
Spinal cord layer 9 L4 medial partleft
Spinal cord layer 9 L4 ventrolateral motor columnleft
Spinal cord layer 9 L4 dorsolateral motor columnleft
Spinal cord layer 9 L4 ventral partleft

Output to

NameSideAbbr.WeightDetails
Dorsal periaqueductal grayipsiDPAG0.5
Lateral periaqueductal grayipsiLPAG1
CerebellumipsiCERE-0.5
Cerebellar cortexipsiCERC-0.5
Cerebellar nucleiipsiDCeN-0.5
Anterior interposed nucleusipsiAIN-0.5
Ventromedial reticular formationipsiVMRF-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Lateral vestibular nucleusipsiLVe-0.5
GracileipsiGra-0.5
Inferior oliveipsiIO-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Lateral group of the dorsal thalamusipsiLAT0
Ventrobasal complexipsiVB1
Medial thalamic zoneipsiMTZ0
Ventral spinocerebellar tractipsivsc-2
Anterior commissureipsiac-2
Ventral horn C1ipsiVHC10
Ventral horn C2ipsiVHC20
Ventral horn C3ipsiVHC30
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Dorsal periaqueductal graycontraDPAG1
Lateral periaqueductal graycontraLPAG1
Red nucleuscontraR-0.5
Anterior interposed nucleuscontraAIN-0.5
Superior cerebellar pedunclecontrasucep-2
Ventromedial reticular formationcontraVMRF-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Lateral vestibular nucleuscontraLVe-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Lateral group of the dorsal thalamuscontraLAT0
Medial thalamic zonecontraMTZ0
Lateral funiculuscontralf-2
Lateral agranular prefrontal cortex layer 5contraAGlL5-0.5
Anterior commissurecontraac-2
Ventral horn C1contraVHC10
Ventral horn C2contraVHC20
Ventral horn C3contraVHC30
Ventromedial gray substance at the level of the lumbal segment 4contraL4vmg3
Peronal nerveipsiperonal-0.5
Common peronal nerveipsicperonal-2
Sural nerveipsisural3
Hamstring nerveipsihamstri-0.5
Medial gastrocnemic nerveipsimegasc-0.5
Pudendal nerveipsipude-2
Sciatic nerveipsisci3
Tibial nerveipsitibial-2
Medial gastrocnemius nerveipsimgastrocn3
StomachipsiOrgsStomS-1
Extensor digitorum longusipsiMuscExtDigLong-0.5
Biceps femoris muscleipsiMuscBF3
Posterior head of the biceps femoris muscleipsiMuscPHBF-0.5
Caudofemoralis muscleipsiMuscCFem-0.5
Quadriceps femoris muscleipsiMuscQuadF-0.5
Semimembranosus muscleipsiMuscSemiM-0.5
Semitendinosus muscleipsiMuscSemiten3
Principal head of the semitendinosus muscleipsiMuscPHSemiten-0.5
Hind leg musclesipsiMuscHiLe3
Lower hind leg musclesipsiMuscHiLeL-0.5
Tibialis anterior muscleipsiMuscTA3
Peroneus muscleipsiMuscPero-0.5
Knee musclesipsiMuscHiK-0.5
Inguinal musclesipsiMuscHiig-0.5
Gluteus maximus muscleipsiMuscHigm3
Gracilis muscle of hindlimbipsiMuscHigr3
Vastus medialis of the hindlimbipsiMuscHivm3
Gastrocnemius muscleipsiMuscGC3
Medial gastrocnemius muscleipsiMuscMGC3
Soleus muscleipsiMuscSo3
Extensor digitorum longus muscle hindlimbipsiMuscHiExDiLo-0.5
Lumbar epaxial musclesipsiMuscLep3
Multifidus muscleipsiMuscMuL-0.5
Ischiocavernosus muscleipsiMuscicav-10
Triceps surae muscleipsiMuscTriSu-0.5
Extensor digitorum longus muscleipsiMuscEDL-0.5
Extensor caudalis medialis muscleipsiMuscExCaMe-0.5
Longissimus muscleipsiMuscLongi-0.5
Hind foot musclesipsiMuscHF-0.5
Triceps surae musclecontraMuscTriSu0

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Laterodorsal tegmental nucleusipsiLDTg1
Dorsal tegmental nucleus lateral partipsiDLTN2
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Parapyramidal nucleusipsiPPy2
Reticular systemipsiRF3
Magnocellular reticular nucleus alpha partipsiNRMCa2
Medial reticular formationipsiRFm-0.5
Paramedian reticular nucleusipsiPMn3
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus oral part caudal partipsiPnOc2.5
Pontine reticular nucleus oral part dorsolateral partipsiPnODL2.5
Pontine reticular nucleus oral part lateral partipsiPnOL2.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Pontine reticular nucleus caudal part ventrolateral partipsiPNCvL2.5
Cuneiforme nucleusipsiCnF2.5
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus dorsal partipsiGidp3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus rostral partipsiLRtr2
Medial subnucleus reticularis ventralis caudal partipsiMSRVc1
Medial subnucleus reticularis ventralis rostral partipsiMSRVr1
Medullary reticular nucleus lateral partipsiMdL1
Subcoeruleus nucleusipsiSubC3
Spinal trigeminal nucleus interpolar partipsiSp5I2
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa2
Paragigantocellular reticular nucleusipsiPGi2
Lateral paragigantocellular nucleusipsiLPGi-0.5
Retroambiguus nucleusipsiRAmb1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Somatomotoric regions layer 5ipsiSMRL53
Area X T12ipsiSCL10T12-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 6 T12ipsiSCL6T12-0.5
Spinal cord layer 3 T12ipsiSCL3T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 1 T12ipsiSCL1T12-0.5
Spinal cord layer 2 T12ipsiSCL2T12-0.5
Spinal cord layer 7 T12ipsiSCL7T12-0.5
Spinal cord layer 8 T12ipsiSCL8T12-0.5
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL20
Dorsal root ganglion L3ipsiDRGL32
Dorsal root ganglion L4ipsiDRGL43
Dorsal root L4ipsidrL4-2
Spinal cord layer 5 L4 mediolateral extentipsiSCL5L4mLe3
Spinal cord layer 6 L4 mediolateral extentipsiSCL6L4mLe3
Spinal cord layer 7 L4 dorsal portionipsiSCL7L4d3
Dorsal root ganglion L5ipsiDRGL54
Spinal cord layer 9 L5ipsiSCL9L51
Dorsal root ganglion L6ipsiDRGL61
Spinal cord layer 9 L6ipsiSCL9L61
Lumbar segments layer 5ipsiLSegL53
Lumbar segments layer 6ipsiLSegL63
Lumbar segments layer 7ipsiLSegL73
Lumbar segments layer 9ipsiLSegL9-0.5
Locus coeruleuscontraLC1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Reticular systemcontraRF3
Medial reticular formationcontraRFm-0.5
Paramedian reticular nucleuscontraPMn3
Pontine reticular nucleus oral partcontraPnO0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Subcoeruleus nucleuscontraSubC1
Raphe obscurus nucleuscontraROb3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Somatomotoric regions layer 5contraSMRL53
Dorsal root ganglion L4contraDRGL42
Spinal cord layer 5 L4 mediolateral extentcontraSCL5L4mLe-0.5
Spinal cord layer 6 L4 mediolateral extentcontraSCL6L4mLe-0.5
Spinal cord layer 7 L4 dorsal portioncontraSCL7L4d-0.5
Lumbar segments layer 7contraLSegL73
Lumbar segments layer 8contraLSegL83
Lumbar segments layer 10contraLSegL103
Ventromedial nucleus of lumbar segment 4contraVML43
Hamstring nerveipsihamstri-0.5
Sciatic nerveipsisci1
Lumbar spinal nerve 4ipsispinL4-0.5
Gastrocnemius nerveipsigastrocn-0.5
Hindpaw skinipsiOrgHPS-0.5
Biceps femoris muscleipsiMuscBF-0.5
Tibialis anterior muscleipsiMuscTA-0.5
Gastrocnemius muscleipsiMuscGC-0.5
Extensor caudalis medialis muscleipsiMuscExCaMe0.5
Musculus extensor caudae lateralisipsiMuscExtLat0.5
Musculus abductor caudae dorsalisipsiMuscAbdCaDo0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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