University of Rostock

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Rat connectome



Substantia nigra compact part medial tier right


Abbreviation
SNCM
Color       
Superior regionsSubstantia nigra compact part

SynonymsAbbr.Language
Substantia nigra compact part medial tierSNCM 
Substantia nigra pars compacta medial part Eng
Medial substantia nigra pars compacta Eng

SubregionsSide
Dorsal margin of the substantia nigra compact part medial tierright
Medial third of the substantia nigra compact partright
Most medial part of the substantia nigra compact partright
Substantia nigra compact part medial two-thirdsright
Dorsal part of substantia nigra compact part medial tierright

Output to

NameSideAbbr.WeightDetails
Cerebellar cortexcontraCERC2
Anterior folium of crus 1contraCrus1A1
Dorsal striatumcontraCPud0.5
Lateral striatumcontraCPul-0.5
Cerebellar cortexipsiCERC1
Dorsal raphe nucleusipsiDR-0.5
Diagonal band of BrocaipsiDBB0
Basal nucleus MeynertipsiB0
Ventral tuberomammillary nucleusipsiVTM-0.5
Glia limitans ventral to the ventral tuberomammillary nucleusipsiTuMgL-0.5
Lateral hypothalamic areaipsiLH-1
Lateral hypothalamus adjacent to the ventral tuberomammillary nucleusipsiLHVTM-0.5
Lateral mammillary nucleusipsiLM-0.5
Supramammillar nucleus lateral partipsiSuML-0.5
Mediodorsal thalamic nucleus ventromedial partipsiMDvm-0.5
Ventromedial thalamic nucleus medial partipsiVMm-0.5
Lateral habenular nucleusipsiLHb0.5
Medial forebrain bundleipsimfb-2
Amygdaloid complexipsiAC1
Basolateral amygdaloid nucleusipsiBL2
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv-0.5
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf-0.5
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus ventral halfipsiCeVh-0.5
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC0
Sublenticular extended amygdalaipsiSLEA0.5
Medial division of the sublenticular extended amygdalaipsiSLEAm-1
Rostral part of claustrumipsiRCl1.5
Globus pallidusipsiGP1
Accumbens nucleusipsiAc3
Accumbens nucleus coreipsiAcbC2
Rostral pole of the accumbens nucleusipsiAcbRP-0.5
Accumbens nucleus shellipsiAcbSh0.5
Medial accumbens shellipsiAcbShm2
Dorsolateral accumbensipsiAcbDL3
Lateral nucleus accumbensipsiAcl3
Caudate putamenipsiCPu3
Anterior striatumipsiAStri4
Anteromedial striatumipsiCPuam2
Medial striatumipsiCPum3
Medial part of caudalmost striatumipsiCPumcm1.5
Central caudal striatumipsiCPucc-0.5
Caudate putamen basal partipsiCPuBa-0.5
Dorsal striatumipsiCPud2
Dorsally in the medial part of the dorsal striatumipsiCPudmd3
Dorsolateral striatumipsiCPudl-0.5
Mediolateral striatumipsiCPuml-0.5
Rostral striatumipsiCPur3
Rostral striatum dorsolateral partipsiCPurDL1.5
Rostrodorsal striatumipsiCPurd1.5
Caudate putamen rostrobasal partipsiCPurb1.5
Ventromedial striatumipsiCPuvm3
Medial part of the caudate putamenipsiCPuMed3
Striatal zone adjoining the lateral ventricleipsiCPuAZLV4
Subventricular zone ventromedialipsiSVZvm-0.5
Cerebral cortexipsiCEC0
Piriform cortexipsiPir1
Cingulate cortexipsiCg-0.5
Anterior cingulate cortexipsiACC2
Anterior cingulate cortex posterior partipsiACCp-0.5
Posterior cingulate cortexipsiPCC3
Frontal association cortexipsiFrA3
Agranular insular cortexipsiAI0.5
Prefrontal cortexipsiPFC2
Medial prefrontal cortexipsimPFC1
Interpeduncular nucleus rostral subnucleus central partipsiIPRce1
Olfactory tubercleipsiTuO2
Olfactory tubercle lateral partipsiTuOL1
Rostral migratory streamipsiRMS-0.5
Septal regionipsiSER0
Lateral septal nucleusipsiLS0.5

Input from

NameSideAbbr.WeightDetails
Tuberomammillary nucleus dorsomedial partcontraTBMdm1
Tuberomammillary nucleus ventrolateral partcontraTBMvl3
Supramammillar nucleuscontraSuM1
Central amygdaloid nucleuscontraCe0.5
Dorsal raphe nucleus rostral partipsiDRr3
Tuberomammillary nucleus dorsomedial partipsiTBMdm2
Tuberomammillary nucleus ventrolateral partipsiTBMvl3
Central amygdaloid nucleusipsiCe1
Ventral pallidumipsiVP3
StriatumipsiSTR2
Accumbens nucleusipsiAc-0.5
Accumbens nucleus coreipsiAcbC-0.5
Accumbens nucleus rostral partipsiAcR-0.5
Rostral pole of the accumbens nucleusipsiAcbRP2.5
Accumbens nucleus shellipsiAcbSh0.5
Medial accumbens shellipsiAcbShm-0.5
Ventral shellipsiAcbShv0
Ventromedial shellipsiAcbShvm2
Caudal accumbensipsiAcbCa-0.5
Medial striatumipsiCPum2
Dorsal striatumipsiCPud1
Rostral striatumipsiCPur2
Fundus of the striatumipsiFS2
Posterior cingulate cortexipsiPCC-1
Prefrontal cortex caudal levelsipsiPFCC-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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