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Rat connectome



Dorsal raphe nucleus rostral part right


Abbreviation
DRr
Color       
Superior regionsDorsal raphe nucleus

SynonymsAbbr.Language
Dorsal raphe nucleus rostral partDRrEng
Rostral part of the dorsal raphe nucleus  
Dorsal raphe nucleus oral halfDRrEng
Rostral subdivision of the dorsal raphe nucleus Eng

SubregionsSide
Dorsal raphe nucleus most rostral partright
Dorsal raphe nucleus rostral part non serotoninergic populationright
Dorsal raphe nucleus rostral part serotoninergic populationright
Dorsal raphe nucleus rostral tipright
Dorsal part of the rostral part of the dorsal raphe nucleusright
Dorsal raphe nucleus extreme rostral wingright
Dorsal raphe nucleus central part of oral halfright
Dorsal raphe nucleus lateral part of oral halfright
Ventral part of the dorsal raphe nucleus rostral partright
Lateral region of the dorsal raphe nucleus rostral partright
Medial region of the dorsal raphe nucleus rostral partright
Dorsal raphe nucleus dorsal rostral partright

Output to

NameSideAbbr.WeightDetails
Central graycontraCG1.5
Central gray pons partcontraCGP2
Superior colliculuscontraSC1
Substantia nigra A9contraSN1
Laterodorsal tegmental nucleuscontraLDTg2
Pedunculopontine tegmental nucleus anterior partcontraPPTga0.5
Superior cerebellar pedunclecontrasucep-2
Dorsal surface of the superior cerebellar peduncle brachium conjunctivumcontradscp-2
Locus coeruleuscontraLC2
Mesencephalic reticular formationcontraMRF2.5
Pontine reticular nucleuscontraPRN2
Gigantocellular reticular nucleuscontraGi-2
Dorsal raphe nucleus lateral wingcontraDRlw1
Pontine raphe nucleuscontraPnR2
Raphe magnus nucleuscontraRMg2
Medulla oblongata rostral partcontraMeObR-2
Medial preoptic nucleuscontraMPO-0.5
Anterior hypothalamic nucleuscontraAHn2.5
Posterior hypothalamic areacontraPHA2.5
Paraventricular hypothalamic nucleuscontraPa2.5
Parafascicular thalamic nucleuscontraPF1
Ventrolateral thalamic nucleuscontraVL1
Lateral posterior thalamic nucleuscontraLP1
Ansa lenticulariscontraal-2
External capsulecontraec-2
Medial forebrain bundlecontramfb-2
Globus palliduscontraGP2
Caudate putamencontraCPu2
Medial striatumcontraCPum1
Ventral striatumcontraCPuv2.5
Lateral striatumcontraCPul1
Entorhinal cortexcontraEnt1
Piriform cortexcontraPir1
Cingulate cortexcontraCg0
Primary visual cortexcontraV10.5
Secondary visual cortex medial areacontraV2M1
Secondary visual cortex lateral areacontraV2L1
Dorsal geniculate nucleus lateral partcontraDLGl1
Ventral lateral geniculate nucleuscontraVLG1
Spinal cord layers C4contraSCLC41
Central grayipsiCG2
Central gray lateral ventral partipsiCGVD-0.5
Central gray mesencephalic part ventral regionipsiCGMv3
Central gray pons partipsiCGP2.5
Dorsal periaqueductal grayipsiDPAG1
Dorsomedial periaqueductal grayipsiDMPAG1
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG2
Superior colliculusipsiSC2
Central tegmental fieldipsiTGAC2
Dorsolateral pontine tegmentumipsiDLPT-0.5
Substantia nigra A9ipsiSN1.5
Substantia nigra A9 dorsal halfipsiSNDh2
Substantia nigra compact partipsiSNC2.5
Substantia nigra compact part medial tieripsiSNCM3
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp2.5
Ventral tegmental area A10 lateral partipsiVTAL3
Laterodorsal tegmental nucleusipsiLDTg2.5
Dorsal tegmental nucleusipsiDTg2
Pedunculopontine tegmental nucleusipsiPPTg3
Pedunculopontine tegmental nucleus anterior partipsiPPTga1
Superior cerebellar peduncleipsisucep-2
Dorsal surface of the superior cerebellar peduncle brachium conjunctivumipsidscp-2
Locus coeruleusipsiLC2.5
Nucleus incertusipsiNI2
Pons oral partipsiPor-0.5
Reticulotegmental nucleus of the ponsipsiRtTg-0.5
Prepositus nucleusipsiPr2
Mesencephalic reticular formationipsiMRF3
Pontine reticular nucleusipsiPRN2.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Cuneiforme nucleusipsiCnF-0.5
Lateral parabrachial nucleusipsiLPB2.5
Parabrachial nucleus medialipsiPBnMe2
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA2
Parvicellular reticular nucleusipsiPCRt3
Facial nucleusipsi7-2
Spinal trigeminal nucleusipsiSp5nc-0.5
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Midline in caudal raphe groupsipsiRANcmi-0.5
Dorsal raphe nucleusipsiDR-0.5
Dorsal raphe nucleus caudal partipsiDRC-0.5
Dorsal raphe nucleus dorsal partipsiDRD2
Dorsal raphe nucleus lateral wingipsiDRlw2
Dorsal raphe nucleus ventral partipsiDRV2
Median raphe nucleusipsiMnR-0.5
Central raphe nucleusipsiCRN3
Midline apneic siteipsiMAS2
Pontine raphe nucleusipsiPnR2.5
Raphe magnus nucleusipsiRMg2.5
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Rostral ventrolateral medullaipsiRVLM3
Rostral subambigual region of the rostral ventrolateral medullaipsiRsARVLM3
Medulla oblongata rostroventralipsiMeObRV1
Endopiriform systemipsiEnN3
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Medial septal nucleusipsiMS2
Substantia innominataipsiSI3
Lateral preoptic areaipsiLPO3
Magnocellular preoptic nucleusipsiMCPO3
Medial preoptic nucleusipsiMPO1
Ventral tuberomammillary nucleusipsiVTM3
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH1
Anterior hypothalamic nucleusipsiAHn3
Posterior hypothalamic areaipsiPHA3
Subparaventricular zoneipsiSuPZ2
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc3
Paraventricular hypothalamic nucleusipsiPa3
Arround paraventricular hypothalamic nucleusipsiPaB2
Periventricular hypothalamic nucleusipsiPe1
Suprachiasmatic nucleusipsiSCh0
Supramammillar nucleusipsiSuM2
A8 dopamine cells retrorubral groupipsiRRF2.5
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF3
Rhomboid thalamic nucleusipsiRh2
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD3
Paraventricular thalamic nucleusipsiPV3
Reuniens thalamic nucleusipsiRe3
Ventrolateral thalamic nucleusipsiVL1.5
Lateral posterior thalamic nucleusipsiLP2
Lateral habenular nucleusipsiLHb2
Ansa lenticularisipsial-2
External capsuleipsiec-2
Medial forebrain bundleipsimfb-2
Amygdaloid complexipsiAC1
Basolateral amygdaloid nucleusipsiBL3
Lateral amygdaloid nucleusipsiLA3
Bed nucleus of the stria terminalisipsiBST2
Central amygdaloid nucleusipsiCe3
Medial amygdaloid nucleusipsiMe0
ClaustrumipsiCl1
Globus pallidusipsiGP2.5
Ventral pallidumipsiVP3
Accumbens nucleusipsiAc2
Caudate putamenipsiCPu3
Medial striatumipsiCPum2
Caudal striatumipsiCPuc2
Rostral striatumipsiCPur2
Ventral striatumipsiCPuv3
Ventromedial striatumipsiCPuvm3
Lateral striatumipsiCPul2
Subthalamic nucleusipsiSTh-0.5
Field CA1 of hippocampusipsiCA11
Entorhinal cortexipsiEnt1.5
Lateral entorhinal cortexipsiLEnt1
Piriform cortexipsiPir3
Glia limitans layeripsigliaLim3
Cingulate cortexipsiCg0
Anterior cingulate cortexipsiACC2
Infralimbic cortexipsiIL1.5
Frontal association cortexipsiFrA3
Frontal cortex area 1ipsiFr13
Frontal cortex area 2ipsiFr23
Insular cortexipsiICX3
Agranular insular cortex dorsal partipsiAID3
Agranular insular cortex posterior partipsiAIP3
Agranular insular cortex ventral partipsiAIV3
Perirhinal cortexipsiA351
Medial prefrontal cortexipsimPFC3
Primary visual cortexipsiV11
Secondary visual cortex medial areaipsiV2M2
Secondary visual cortex lateral areaipsiV2L2
Anterior medial frontal cortexipsiAMFC3
Orbital cortexipsiOrC1.5
Dorsal geniculate nucleus lateral partipsiDLGl2
Ventral lateral geniculate nucleusipsiVLG2
Glomerular layer of the olfactory bulbipsiOBglo-0.5
Granular cell layer of the olfactory bulbipsiOBgra-0.5
Lateral septal nucleusipsiLS2
Lateral septal nucleus dorsal partipsiLSD1
Intermediolateral septal areaipsiSERimL2
Supraependymal terminals of 3d ventricleipsiset3V3
Subependymal terminals under the ependyma of the 3d ventricleipsisete3V3
4th ventricleipsi4V3
Supraependymal terminals of 4th ventricleipsiset4V-0.5
AqueductipsiAq3
Ependyma and subependymal layeripsiE0

Input from

NameSideAbbr.WeightDetails
Lateral habenular nucleus lateral part magnocellular subnucleuscontraLHbLMc0.5
Lateral habenular nucleus medial most portioncontraLHbMM0.5
Lateral habenular nucleus central one-third of the ventral partcontraLHbvcot1
Cingulate cortex area 1contraCg11
Cingulate cortex area 1 caudal partcontraCg1c1
Cingulate cortex area 2contraCg21
Cingulate cortex area 2 caudal partcontraCg2c1
Prelimbic cortex dorsal partcontraPrLd1
Prelimbic cortex ventral partcontraPrLv3
Infralimbic cortexcontraIL3
Frontal polar cortex medial partcontraFPm1
Agranular insular cortex dorsal partcontraAID1
Agranular insular cortex ventral partcontraAIV1
Medial agranular prefrontal cortexcontraAGm0
Dorsolateral orbital cortexcontraDLO1
Lateral orbital cortexcontraLO1
Medial orbital cortexcontraMO1
Ventral orbital cortexcontraVO1
Ventrolateral orbital areacontraVLO1
Central grayipsiCG4
Central gray dorsal partipsiCGD0.5
Central gray lateral partipsiCGL1
Central gray lateral ventral partipsiCGVD2
Central gray ventral areaipsiCGva3
Central grey caudal areaipsicCG3
Central gray dorsolateral partipsiCGDL1
Lateral periaqueductal grayipsiLPAG1
Superior colliculusipsiSC1
Dorsal tegmental bundleipsidtg-2
Peduncularpontine nucleusipsiPPN1
Rostromedial tegmental nucleusipsiRMTg1
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL0.5
Substantia nigra reticular partipsiSNR3
Ventral tegmental area A10ipsiVTA2
Laterodorsal tegmental nucleusipsiLDTg2
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC0.5
Dorsomedial tegmental areaipsiDMTg0.5
Prepositus nucleusipsiPr0.5
Mesencephalic reticular formationipsiMRF3
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB4
Parabrachial nucleus medialipsiPBnMe3
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV0
Medullary reticular nucleusipsiMdD1
Parvicellular reticular nucleusipsiPCRt1
Parvicellular reticular nucleus alpha partipsiPCRtA1
Subcoeruleus nucleus dorsal partipsiSubCD2
Subcoeruleus nucleus ventral partipsiSubCV1
Undefined pontine nucleusipsiPundef_L2
Nucleus of the solitary tract caudal partipsiSolca2
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus around siteipsiDRas4
Linear nucleus of the rapheipsiLIR0.5
Median raphe nucleusipsiMnR0.5
Paramedian raphe nucleusipsiPMnR3
Raphe magnus nucleusipsiRMg1
Raphe pallidus nucleusipsiRPa0
Dorsal paragigantocellular nucleusipsiDPGi2
Lateral paragigantocellular nucleusipsiLPGi1
Endopiriform systemipsiEnN0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Nucleus of the vertical limb of the diagonal bandipsiVDB0.5
Medial septal nucleusipsiMS1
Substantia innominataipsiSI2
Medial tuberal nucleusipsiMTuN2
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA2
Magnocellular preoptic nucleusipsiMCPO0.5
Medial preoptic nucleusipsiMPO2.5
Median preoptic nucleusipsiMnPO1
Tenia tectaipsiTT2
Tuberomammillary nucleusipsiTuM1
Tuberomammillary nucleus dorsomedial partipsiTBMdm3
Tuberomammillary nucleus ventrolateral partipsiTBMvl2
Ventral tuberomammillary nucleusipsiVTM1
Caudal tuberomammillary nucleusipsiTuMC0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx0
Lateral hypothalamic area rostrocaudal extendipsiLHrce2
Lateroanterior hypothalamic nucleusipsiLAH0.5
Anterior hypothalamic area central partipsiAHAC1
Anterior hypothalamic nucleusipsiAHn1.5
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Posterior hypothalamic areaipsiPHA2.5
Ventromedial hypothalamic nucleusipsiVMH0.5
Arcuate nucleusipsiArc0.5
Supramammillar nucleusipsiSuM2
Perifornical nucleusipsiPeF2
Subbrachial nucleusipsiSubB0.5
Subincertal nucleusipsiSubI2
Supraoculomotor capipsiSu3C0.5
Midline group of the dorsal thalamusipsiMTN2
Paraventricular thalamic nucleus posterior partipsiPVP1
Zona incertaipsiZI2
Zona incerta medial partipsiZIm1
Zona incerta mediolateral extendipsiZIml0.5
Tuber cinereum areaipsiTC1.5
Lateral habenular nucleus lateral part magnocellular subnucleusipsiLHbLMc0.5
Lateral habenular nucleus medial partipsiLHbM2.5
Lateral habenular nucleus medial most portionipsiLHbMM0.5
Lateral habenular nucleus central one-third of the ventral partipsiLHbvcot1
Central tegmental fasciculusipsictf-2
RetinaipsiRET-0.5
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL0.5
Bed nucleus of the stria terminalis lateral division posterior partipsiBSTLP1.5
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA0.5
Bed nucleus of the stria terminalis medial division posterior partipsiBSTMP1.5
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV1.5
Central amygdaloid nucleusipsiCe1.5
Anterior amygdaloid areaipsiAA0.5
ClaustrumipsiCl2
Ventral pallidumipsiVP2
Accumbens nucleusipsiAc0.5
Accumbens nucleus rostrolateral partipsiAcRL3
Accumbens nucleus shellipsiAcbSh0.5
Fundus of the striatumipsiFS1.5
Cingulate cortex area 1ipsiCg11
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2ipsiCg21
Cingulate cortex area 2 caudal partipsiCg2c1
Prelimbic cortexipsiPrL-0.5
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex ventral partipsiPrLv3
Infralimbic cortexipsiIL1.5
Frontal association cortexipsiFrA1
Frontal polar cortex medial partipsiFPm1
Insular cortexipsiICX2
Agranular insular cortex dorsal partipsiAID1
Agranular insular cortex ventral partipsiAIV1
Dorsal peduncular cortexipsiDP3
Ventral prefrontal cortexipsiVPFC-0.5
Dorsolateral orbital cortexipsiDLO1
Lateral orbital cortexipsiLO1.5
Lateral orbital cortex rostral partipsiLOr1
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO3
Olfactory ventricleipsiOV3
Lateral septal nucleusipsiLS1.5
Septohypothalamic nucleusipsiSHy1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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