University of Rostock

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Rat connectome



Linear nucleus of the raphe right


Abbreviation
LIR
Color       
Superior regionsRaphe nuclei

SynonymsAbbr.Language
Nucleus linearis intermedius Lat
Linear raphe nucleus  
Nucleus raphe linearisRaLiEng
Linear nucleus of the rapheLIREng
Intermediate linear nucleus  

SubregionsSide
Dorsal linear nucleus of the rapheright
Linear oral nucleus of the rapheright
Rostral linear nucleus of the rapheright
Nucleus linealis superiorright

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscuscontraNLL0
Central tegmental field dorsal partcontraTGACd0
Laterodorsal tegmental nucleuscontraLDTg0
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg1
Dorsal raphe nucleus lateral wingcontraDRlw1
Dorsal portion of the lateral geniculate complexcontraLGD-0.5
Nuclei of the lateral lemniscusipsiNLL0
Central tegmental field dorsal partipsiTGACd0
Substantia nigra A9ipsiSN-0.5
Laterodorsal tegmental nucleusipsiLDTg0
Ventral tegmental nucleusipsiVTg-0.5
Dorsal tegmental nucleusipsiDTg0
Pedunculopontine tegmental nucleusipsiPPTg1
Medial reticular formationipsiRFm-0.5
Parvicellular reticular nucleusipsiPCRt3
Dorsal raphe nucleus dorsal partipsiDRD1
Dorsal raphe nucleus lateral wingipsiDRlw1
Dorsal raphe nucleus rostral partipsiDRr0.5
Dorsal raphe nucleus ventral partipsiDRV1
Superior central raphe nucleusipsiCS3
Rostral ventrolateral medullaipsiRVLM3
Rostral subambigual region of the rostral ventrolateral medullaipsiRsARVLM3
Diagonal band of BrocaipsiDBB1
Substantia innominataipsiSI1
Substantia innominata anterior partipsiSIA1
Substantia innominata dorsal partipsiSID1
Substantia innominata posterior partipsiSIP2
Magnocellular preoptic nucleusipsiMCPO2
Lateral hypothalamic areaipsiLH-0.5
Mammillary bodyipsiCMAM-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Lateral posterior thalamic nucleusipsiLP3
Zona incertaipsiZI1
Amygdaloid complexipsiAC-0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Ventral pallidumipsiVP2
Caudate putamenipsiCPu-0.5
Cerebral cortexipsiCEC1
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC-0.5
Frontal cortex area 2ipsiFr23
Insular cortexipsiICX-0.5
Prefrontal cortexipsiPFC3
Motoric regionsipsiM2
Sensory regionsipsiSR1
Visual regionsipsiVR3
Dorsal portion of the lateral geniculate complexipsiLGD1
Posterior cricoarytenoid muscleipsiMuscPCA2
Detrusor muscle of the urinary bladderipsiOrgUrBLaDe-10

Input from

NameSideAbbr.WeightDetails
Laterodorsal tegmental nucleuscontraLDTg3
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Medial septal nucleuscontraMS1
Medial group of the dorsal thalamuscontraMED0
Mediodorsal thalamic nucleuscontraMD0
Ventrobasal complexcontraVB0
Lateral habenular nucleuscontraLHb-0.5
Globus palliduscontraGP0
Field CA1 of hippocampus ventral partcontraCA1v0
Infralimbic cortexcontraIL1
Parietal association cortexcontraPtA1
Laterodorsal tegmental nucleusipsiLDTg3
Nucleus incertus pars compactaipsiNIc0
Medial reticular formationipsiRFm-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Dorsal raphe nucleusipsiDR-0.5
Medial septal nucleusipsiMS0.5
Substantia innominata dorsal partipsiSID-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Mammillary bodyipsiCMAM-0.5
Anterior group of the dorsal thalamusipsiATN-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Medial group of the dorsal thalamusipsiMED1
Mediodorsal thalamic nucleusipsiMD1
Ventrobasal complexipsiVB1
Anterior basomedial nucleusipsiBMA1
Central amygdaloid nucleus lateral divisionipsiCeL0.5
Central amygdaloid nucleus medial division rostral partipsiCeMR1
Globus pallidusipsiGP1
Field CA1 of hippocampus ventral partipsiCA1v1
Infralimbic cortexipsiIL0.5
Parietal association cortexipsiPtA0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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