University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Medial group of the dorsal thalamus left


Abbreviation
MED
Color       
Superior regionsDorsal thalamus

SynonymsAbbr.Language
Nuclei of the central thalamic gray  
Nuclei of the central thalamic gray matter  
Central gray of the thalamus  
Central thalamic gray  
Median nucleiMD 
Medial group of the dorsal thalamusMEDEng
Dorsal medial group Eng

SubregionsSide
Dorsomedian thalamic nucleusleft
Mediodorsal thalamic nucleusleft
Perireuniensis nucleusleft
Submedius thalamic nucleusleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG2
Substantia nigra A9ipsiSN1
Locus coeruleusipsiLC1
Dorsal raphe nucleusipsiDR2
Linear nucleus of the rapheipsiLIR1
Median raphe nucleusipsiMnR1
Islands of CallejaipsiICj2
Diagonal band of BrocaipsiDBB2
Lateral preoptic areaipsiLPO2.5
Medial preoptic areaipsiMPA2.5
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic nucleusipsiPH3
Ventromedial hypothalamic nucleusipsiVMH1.5
Arcuate nucleusipsiArc2
Posterior mammillay nucleusipsiPMAM3
Submammillothalamic nucleusipsiSMT2.5
Supramammillar nucleusipsiSuM1
Reuniens thalamic nucleusipsiRe2
Reticular thalamic nucleusipsiRt-0.5
Reticular thalamic nucleus ventral partipsiRtV2
Zona incertaipsiZI3
Tuber cinereum areaipsiTC1.5
Anterior amygdaloid areaipsiAA2.5
Subventricular nucleusipsiSV3
Accumbens nucleusipsiAc1
Caudate putamenipsiCPu3
Dorsal striatumipsiCPud1
Dorsocentral striatumipsiDCS2
Subiculum dorsal partipsiSd1
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortexipsiMEnt0.5
Piriform cortexipsiPir3
Cingulate cortexipsiCg3
Frontal association cortexipsiFrA-0.5
Frontal cortex area 2ipsiFr22
Perirhinal cortexipsiA351
Ectorhinal cortexipsiA361
Postrhinal cortexipsiPOR1
Lateral septal nucleus intermediate partipsiLSI2.5
Septofimbrial nucleusipsiSFi2
Triangular septal nucleusipsiTS2
Central graycontraCG1
Substantia nigra A9contraSN0
Dorsal raphe nucleuscontraDR1.5
Linear nucleus of the raphecontraLIR0
Median raphe nucleuscontraMnR0
Islands of CallejacontraICj1
Diagonal band of BrocacontraDBB0
Lateral preoptic areacontraLPO1.5
Medial preoptic areacontraMPA1.5
Dorsal hypothalamic areacontraDA0
Dorsomedial hypothalamic nucleus [Medial zone]contraDM1
Posterior hypothalamic nucleuscontraPH2
Ventromedial hypothalamic nucleuscontraVMH1
Arcuate nucleuscontraArc1
Posterior mammillay nucleuscontraPMAM1
Submammillothalamic nucleuscontraSMT1
Supramammillar nucleuscontraSuM1
Reuniens thalamic nucleuscontraRe1
Zona incertacontraZI0
Tuber cinereum areacontraTC0
Anterior amygdaloid areacontraAA1.5
Subventricular nucleuscontraSV0
Subiculum dorsal partcontraSd0
Piriform cortexcontraPir2
Cingulate cortexcontraCg0
Lateral septal nucleus intermediate partcontraLSI0.5
Septofimbrial nucleuscontraSFi1.5
Triangular septal nucleuscontraTS0.5

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC2
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleusipsiPPTg2
Locus coeruleusipsiLC1
Lateral parabrachial nucleusipsiLPB1
Dorsal raphe nucleusipsiDR1
Median raphe nucleusipsiMnR1
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Lateral preoptic areaipsiLPO2
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area perifornical partipsiPFx4
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM4
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM4
Reticular thalamic nucleusipsiRt1
Zona incertaipsiZI1
Bed nucleus of the stria terminalisipsiBST1
Globus pallidusipsiGP1
Ventral pallidumipsiVP2
Ventral pallidum dorsolateral partipsiVPdl1
Ventral pallidum in the polymorph layer of the olfactory tubercleipsiVPtu3
Ventral pallidum ventromedial partipsiVPvm3
Sublenticular subcommissural extrapallidal areaipsiSXP2
Anterior cingulate cortexipsiACC2
Frontal association cortexipsiFrA2
Frontal cortex area 2ipsiFr23
Insular cortexipsiICX2
Interpeduncular nucleusipsiIP1
Olfactory tubercleipsiTuO1
Dorsal tegmental nucleus lateral partcontraDLTN1
Pedunculopontine tegmental nucleuscontraPPTg1
Lateral parabrachial nucleuscontraLPB1
Dorsal raphe nucleuscontraDR1
Median raphe nucleuscontraMnR1
Reticular thalamic nucleuscontraRt1
Zona incertacontraZI1
Bed nucleus of the stria terminaliscontraBST1
Frontal cortex area 2contraFr21
Interpeduncular nucleuscontraIP1
Olfactory tuberclecontraTuO1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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