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Rat connectome



Field CA2 of hippocampus right


Abbreviation
CA2
Color       
Superior regionsAmmon horn

SynonymsAbbr.Language
Field CA2 of hippocampusCA2Eng
Ammons horn field CA2  
Region II of hipoocampus proper  
CA2 field of the hippocampus  
Field CA2 Eng

SubregionsSide
Field CA2 of hippocampus lateral partright
Field CA2 of hippocampus layersright
Field CA2 of hippocampus NPY neuron populationright
Temporal part of field CA2 of hippocampusright
Field CA2 of hippocampus septal partright
Field CA2 of hippocampus dorsal partright
Field CA2 of hippocampus ventral partright
Field CA2 of hippocampus rostral partright
Field CA2 of hippocampus mid portionright
Field CA2 of hippocampus mid septotemporal portionright
Field CA2 of hippocampus anterior partright
Alveus border of field CA2 of hippocampusright
Field CA2 of hippocampus temporal partright

Output to

NameSideAbbr.WeightDetails
Dorsomedial hypothalamic nucleus anterior partcontraDMA3
Dorsomedial nucleus posterior partcontraDMHp3
Anterior hippocampal formationcontraAHCf2
Dentate gyruscontraDG0
Septal regioncontraSER-0.5
Lateral septal nucleuscontraLS3
Lateral septal nucleus dorsal partcontraLSD2
Rostrolateral part of the septumcontraSERoL-0.5
Cervical segment 7contraCS7-1
Paraflocculus ventral partipsiPFlv1
FlocculusipsiFl1
Diagonal band of BrocaipsiDBB0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS1
Substantia innominataipsiSI2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Dorsomedial hypothalamic nucleus anterior partipsiDMA0
Dorsomedial nucleus posterior partipsiDMHp0
Posterior hypothalamic areaipsiPHA1
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleusipsiPa0
Suprachiasmatic nucleusipsiSCh3
Anterior group of the dorsal thalamusipsiATN0
Anterodorsal thalamic nucleusipsiAD0
Anteromedial thalamic nucleusipsiAM0
Anteroventral thalamic nucleusipsiAV0
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Mediodorsal thalamic nucleus medial partipsiMDM-10
Paratenial thalamic nucleusipsiPT0
Postcommissural fornixipsifpc-2
Basolateral amygdaloid nucleusipsiBL3
Basomedial amygdaloid nucleusipsiBM3
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe3
Posterior amygdaloid nucleusipsiCOAp0
Medial amygdaloid nucleusipsiMe1
ClaustrumipsiCl0
StriatumipsiSTR-0.5
HippocampusipsiHIPP3
Dorsal hippocampusipsiHIPPd-0.5
Dentate gyrusipsiDG-0.5
Dentate gyrus molecular layeripsiDGmL0
Granule cell layer of the dentate gyrusipsiDGgL0
Hilus of the dentate gyrusipsiHil-0.5
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus dorsalipsiCA1d-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad-0.5
Field CA1 of hippocampus layer deep portion of the stratum radiatumipsiCA1L5srdpo-0.5
Field CA1 of hippocampus layer stratum oriensipsiCA1or-0.5
Field CA1 of hippocampus ventral partipsiCA1v-0.5
Proximal field CA1 of hippocampusipsiPCA1-0.5
Field CA2 of hippocampusipsiCA2-0.5
Field CA2 of hippocampus layer deep portion of the stratum radiatumipsiCA2L5srd-0.5
Field CA2 of hippocampus layer stratum oriensipsiCA2or-0.5
Field CA3 of hippocampusipsiCA3-0.5
Distal field CA3 of hippocampusipsiDCA3-0.5
Field CA3 of hippocampus layer stratum radiatum deep zoneipsiCA3Radd-0.5
Field CA3 of hippocampus layer stratum oriensipsiCA3or-0.5
Most proximal part of the field CA3 of hippocampusipsiMPCA31
Field CA3c of hippocampusipsiCA3c-0.5
Field CA3a of hippocampus layers stratum oriensipsiCA3aLso-0.5
Field CA3b of hippocampusipsiCA3b-0.5
SubiculumipsiS-0.5
Subiculum dorsal partipsiSd3
Molecular layer of the subiculumipsiSumo3
Molecular layer of the dentate gyrusipsiMol-0.5
Fimbria fornix regionipsififo-2
Descending column of the fornixipsidcf1
Indusium griseumipsiIG0
PresubiculumipsiPrS0
ParasubiculumipsiPaS1
Entorhinal cortexipsiEnt4
Lateral entorhinal cortexipsiLEnt0
Medial entorhinal cortex dorsal partipsiMEntD0
Postpiriform transition areaipsiTR0.5
Retrosplenial ventral partipsiRSPv0
Retrosplenial agranular cortexipsiRSA0
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Dorsal anterior cingulate cortexipsiDACC2
Ventral anterior cingulate cortexipsiVACC0
Prelimbic cortexipsiPrL4
Infralimbic cortexipsiIL1
Parietal cortex posterior areaipsiParP0
Primary auditory cortexipsiAu10
Insular cortexipsiICX0.5
Agranular insular cortex dorsal partipsiAID0
Agranular insular cortex ventral partipsiAIV0
Perirhinal cortexipsiA350
Ectorhinal cortexipsiA360
Motoric regionsipsiM0
Lateral agranular prefrontal cortexipsiAGl0
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm0
Primary visual cortexipsiV10
Secondary visual cortex medial areaipsiV2M0.5
Primary visual cortex binocular areaipsiV1B0
Mediolateral cortical visual areaipsiVISlm0
Anteromedial cortical visual areaipsiVISam0
Lateral orbital cortexipsiLO0
Ventral orbital cortexipsiVO0
Ventrolateral orbital areaipsiVLO0
Accessory olfactory bulbipsiAOB0
Olfactory bulb A16ipsiMOB0
Septal regionipsiSER-0.5
Lateral septal nucleusipsiLS4
Lateral septal nucleus dorsal partipsiLSD2
Posterior septal complexipsiPSC3
Septofimbrial nucleusipsiSFi3
Triangular septal nucleusipsiTS1
Rostrolateral part of the septumipsiSERoL-0.5
Caudoventral septal regionipsiCVSER-0.5
Cervical segment 7ipsiCS7-1

Input from

NameSideAbbr.WeightDetails
Nucleus incertus pars dissipatacontraNId1
Subcoeruleus nucleus dorsal partcontraSubCD1.5
Tuberomammillary nucleuscontraTuM-0.5
Lateral hypothalamic areacontraLH-0.5
Dorsal hypothalamic areacontraDA-0.5
Supramammillar nucleuscontraSuM0.5
Supramammillar nucleus posterior partcontraSuMp1
Reticular thalamic nucleuscontraRt-0.5
Zona incertacontraZI-0.5
HippocampuscontraHIPP0
Dentate gyruscontraDG1
Hilus of the dentate gyruscontraHil-0.5
Field CA1 of hippocampus anterior partcontraCA1A1
Field CA3 of hippocampuscontraCA3-0.5
Ventral tegmental area A10ipsiVTA-1
Laterodorsal tegmental nucleusipsiLDTg0.5
Locus coeruleus dorsal partipsiLCD-0.5
Nucleus incertus pars compactaipsiNIc0.5
Nucleus incertus pars dissipataipsiNId2
Subcoeruleus nucleus dorsal partipsiSubCD2
Dorsal endopiriform nucleusipsiDEn0
Ventral endopiriform nucleusipsiVEn0
Medial septal nucleusipsiMS-0.5
Tuberomammillary nucleusipsiTuM-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area perifornical partipsiPFx1
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA1
Supramammillar nucleusipsiSuM2
Supramammillar nucleus lateral part posterior levelipsiSuMLPL1
Supramammillar nucleus posterior partipsiSuMp3
Reticular thalamic nucleusipsiRt-0.5
Zona incertaipsiZI-0.5
Accessory basal nucleus magnocellular divisionipsiABm0
Anterior basolateral nucleusipsiBLA0
Posterior basolateral nucleusipsiBLP1
Anterior basomedial nucleusipsiBMA0
Posterior basomedial nucleusipsiBMP1
Lateral amygdaloid nucleusipsiLA0
Ventromedial part of the lateral nucleusipsiLaVM1
Amygdalopiriform transition areaipsiAPir0
Anterior cortical amygdaloid nucleusipsiACo0
Posterior amygdaloid nucleusipsiCOAp1
Posterolateral cortical nucleusipsiPLCo0
Nucleus of the lateral olfactory tractipsiLOT0
Periamygdaloid complexipsiPAC1
Periamygdaloid complex medial divisionipsiPACm0
Periamygdaloid complex sulcal divisionipsiPACs0
Posteromedial cortical nucleusipsiPMCo0.5
ClaustrumipsiCl0
Dentate gyrusipsiDG2
Hilus of the dentate gyrusipsiHil-2
Field CA1 of hippocampusipsiCA10
Field CA2 of hippocampusipsiCA2-0.5
Field CA2 of hippocampus layer stratum pyramidale secondary axon of pyramidal cellsipsiCA2L3sapy-0.5
Field CA3 of hippocampusipsiCA32
Field CA3a of hippocampus pyramidal cell layer secondary axon of pyramidal cellsipsiCA3aLsapyc-0.5
SubiculumipsiS0
Subiculum dorsal partipsiSd0
Subiculum ventral partipsiSv0
Fimbriaipsifimb1
Indusium griseumipsiIG0
PresubiculumipsiPrS0
ParasubiculumipsiPaS1
Entorhinal cortexipsiEnt2
Lateral entorhinal cortexipsiLEnt2
Lateral entorhinal cortex dorsal part layer 5ipsiLEntdL50.5
Lateral entorhinal cortex dorsal part layer 6ipsiLEntdL60.5
Lateral entorhinal cortex dorsal part layer 3ipsiLEntdL30.5
Lateral entorhinal cortex dorsal part layer 4ipsiLEntdL40.5
Medial entorhinal cortex dorsal partipsiMEntD2
Medial entorhinal cortex layer 2 stellate neuronsipsiMEntLyL2st-0.5
Piriform cortexipsiPir0
Postpiriform transition areaipsiTR0
Retrosplenial ventral partipsiRSPv0
Retrosplenial ventral aipsiRSv-a4
Retrosplenial agranular cortexipsiRSA0
Dorsal anterior cingulate cortexipsiDACC0
Ventral anterior cingulate cortexipsiVACC0
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL0
Temporal cortexipsiTE0
Auditory regionsipsiAU0
Primary auditory cortexipsiAu10
Ventral auditory areasipsiAUDv0
Agranular insular cortex posterior partipsiAIP0
Granular insular cortexipsiGI0
Perirhinal cortexipsiA350.5
Ectorhinal cortexipsiA362
Motoric regionsipsiM0
Lateral agranular prefrontal cortexipsiAGl0
Medial agranular prefrontal cortexipsiAGm0
Primary somatosensory cortexipsiS10
Secondary somatosensory cortexipsiS20
Primary visual cortexipsiV10
Secondary visual cortex lateral areaipsiV2L0
Primary visual cortex binocular areaipsiV1B0
Laterolateral cortical visual areaipsiVISll0
Anteromedial cortical visual areaipsiVISam0
Ventral orbital cortexipsiVO0
Olfactory bulb A16ipsiMOB0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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