University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Spinal cord layer 2 L6 right


Abbreviation
SCL2L6
Color       
Superior regionsSuperficial dorsal horn L6

SynonymsAbbr.Language
Spinal cord layer 2 L6SCL2L6Eng

SubregionsSide
Spinal cord layer 2 inner part L6right
Spinal cord layer 2 outer part L6right
Spinal cord layer 2 L6 interneuronsright

Output to

NameSideAbbr.WeightDetails
MesencephaloncontraMEC0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG1
Ventrolateral periaqueductal graycontraVLPAG1
Laterodorsal tegmental nucleuscontraLDTg0
Locus coeruleuscontraLC0.5
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF3
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus dorsal partcontraLPBD-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus medialcontraPBnMe0.5
Parabrachial nucleus superior lateralcontraPBSL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Nucleus of the solitary tractcontraSol3
Caudal ventrolateral medullacontraCVLM3
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Lateral hypothalamic areacontraLH4
Medial division of the hypothalamuscontraMdH4
Posterior hypothalamic areacontraPHA1
ThalamuscontraT3
Posterior thalamic nuclear groupcontraPo-0.5
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Ventrobasal complexcontraVB0.5
Ventral posterolateral thalamic nucleuscontraVPL0.5
Ventral posteromedial thalamic nucleuscontraVPM0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Ventral horn C1contraVHC11
Cervical segment 2contraCS20
Ventral horn C2contraVHC21
Cervical segment 3contraCS30
Ventral horn C3contraVHC31
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Thoracal segment 2contraT20
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 6contraT60
Thoracal segment 7contraT70
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 11contraT110
Thoracal segment 13contraT130
Lumbar segment 1contraL10
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 4contraL40
Area X L4contraSCL10L41
Spinal cord layer 8 L4contraSCL8L41
Lumbar segment 6contraL60
Sacral segment 1contraSa10
Sacral segment 2contraSa20
Sacral segment 3contraSa30
Sacral segment 4contraSa40
Periaqueductal grayipsiPAG0.5
Lateral periaqueductal grayipsiLPAG1.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Superior colliculus deep layersipsiSCd1.5
Laterodorsal tegmental nucleusipsiLDTg0
Locus coeruleusipsiLC1
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF0.5
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL0
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL3
Subnucleus reticularis dorsalisipsiSRD1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract medial partipsiSolM-0.5
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM1
Rostral ventrolateral medullaipsiRVLM1
A1 noradrenergic cellsipsiA13
A2 noradrenergic cellsipsiA20.5
Cuneate nucleusipsiCu-0.5
GracileipsiGra1
Lateral hypothalamic areaipsiLH3
Medial division of the hypothalamusipsiMdH3
Posterior hypothalamic areaipsiPHA1
Paraventricular hypothalamic nucleusipsiPa0.5
ThalamusipsiT1
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL0.5
Ventral posteromedial thalamic nucleusipsiVPM0.5
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS11
Ventral horn C1ipsiVHC10.5
Cervical segment 2ipsiCS21
Ventral horn C2ipsiVHC20.5
Cervical segment 3ipsiCS31
Ventral horn C3ipsiVHC30.5
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Mid thoracal segmentsipsiTSegM-2
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Area X L4ipsiSCL10L41
Spinal cord layer 8 L4ipsiSCL8L41
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Lumbar segment 5ipsiL51
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa21
Interneuron groups of layer 9 S2ipsiiGL9S2-0.5
Motoneuron groups of layer 9 S2ipsiMGL9S2-0.5
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
Sciatic nerveipsisci-2
Lumbar spinal nerve 5ipsispinL5-2
StomachipsiOrgsStomS-1
Biceps femoris musclecontraMuscBF1
Hindpaw skinipsiOrgHPS1
Biceps femoris muscleipsiMuscBF1
Bulbospongiosus muscleipsiMuscbsp1
External urethral sphincter muscleipsiMuscEUS-0.5
Ischiocavernosus muscleipsiMuscicav-10
ClitorisipsiOrgCLi-0.5
CervixipsiOrgUTC2

Input from

NameSideAbbr.WeightDetails
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cells caudal partcontraA5C0.5
A5 noradrenaline cells rostral partcontraA5R0.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl2
Medial agranular prefrontal cortexcontraAGm2
Primary somatosensory cortexcontraS12
Somatomotoric regions layer 5contraSMRL51
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Dorsal root ganglion L6contraDRGL60.5
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C0.5
A5 noradrenaline cells rostral partipsiA5R0.5
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Somatomotoric regions layer 5ipsiSMRL51
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL4-0.5
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL51
Dorsal root ganglion L6ipsiDRGL62
Posterior femoral cutaneous nervecontrafemPC0
Femoral nerveipsifem1
Lateral femoral cutaneous nerveipsifemLC0
Common peronal nerveipsicperonal0
Posterior femoral cutaneous nerveipsifemPC-0.5
Sural nerveipsisural0
Saphenous nerveipsispn0
Sciatic nerveipsisci3
Tibial nerveipsitibial0
Dorsal penile nerveipsidpn3
Pudendal nerveipsipude-0.5
Ventral branch of the pudendal nerveipsipudeVb3
Dorsal branch of the pudendal nerveipsipudedb3
Hamstring nerveipsihamstri2
Obturator nerveipsiobturat0
Lateral plantar nerveipsilpn0
Medial plantar nerveipsimpn0
Subcutaneous nipple region of the mammary gland M6contraOrgsMamM6-1
Urinary bladdercontraOrgUrBLa-0.5
Medial malleolus skinipsiOrgFmema-0.5
Hindpaw digit 5ipsiOrgHPD53
Gastrocnemius muscleipsiMuscGC-0.5
Subcutaneous nipple region of the mammary gland M6ipsiOrgsMamM61
Urinary bladderipsiOrgUrBLa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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