University of Rostock

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Rat connectome



Lumbar epaxial muscles left


Abbreviation
MuscLep
Color       
Superior regionsMuscle system

SynonymsAbbr.Language
Lumbar epaxial musclesMuscLepEng

Input from

NameSideAbbr.WeightDetails
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF-0.5
Periaqueductal grayipsiPAG-0.5
Dorsal longitudinal fasciculusipsidlf-0.5
Red nucleusipsiR-10
Prerubral fieldipsiPR-10
Substantia nigra A9ipsiSN-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Edinger Westphal nucleusipsiEW-0.5
A5 noradrenaline cellsipsiA5-0.5
Locus coeruleusipsiLC-0.5
Caudoventrolateral reticular nucleusipsiCVLR-0.5
Intermediate reticular nucleusipsiIRt-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus ventral partipsiPnV-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Gigantocellular reticular nucleus principal partipsiGiP-10
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Medullary reticular nucleusipsiMdD-0.5
Medial subnucleus reticularis ventralisipsiMSRV-10
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Medullary reticular nucleus ventral partipsiMdV-0.5
Subcoeruleus nucleus alpha partipsiSubCA-10
Subcoeruleus nucleus dorsal partipsiSubCD-10
Subcoeruleus nucleus ventral partipsiSubCV-10
C1 adrenaline cellsipsiC1-0.5
Area postremaipsiAP-0.5
Peritrigeminal zoneipsiP5-0.5
Superior vestibular nucleusipsiSuVe-0.5
Medial vestibular nucleusipsiMVe-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tractipsiSol-0.5
Dorsal raphe nucleusipsiDR-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Rostral ventrolateral medullaipsiRVLM-0.5
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Retroambiguus nucleusipsiRAmb-0.5
Lateral preoptic areaipsiLPO-0.5
Medial preoptic areaipsiMPA-0.5
Medial preoptic nucleusipsiMPO-0.5
Vascular organ of the lamina terminalisipsiVOLT-0.5
Dorsomedial hypothalamic nucleusipsiDMHy-10
Lateral hypothalamic areaipsiLH-0.5
Medial preoptic anterior regionipsiMPAr-0.5
Anterior hypothalamic areaipsiAHA-0.5
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic areaipsiDMHyA-0.5
Posterior hypothalamic areaipsiPHA-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus central partipsiVMHC-0.5
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM-0.5
Ventromedial hypothalamic nucleus rostral partipsiVMHR-0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL-0.5
Periventricular zoneipsiPVZ-10
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleus dorsal cap [Periventricular zone anterior region]ipsiPaDC-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular nucleus medial parvocellular partipsiPaMep-0.5
Paraventricular nucleus dorsal capipsiPaDoCap-10
Paraventricular nucleus ventral partipsiPaVe-0.5
Periventricular hypothalamic nucleusipsiPe-0.5
Suprachiasmatic nucleusipsiSCh-0.5
A8 dopamine cells retrorubral groupipsiRRF-10
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic areaipsiRCh-0.5
Retrochiasmatic area posterior partipsiRChp-0.5
Reuniens thalamic nucleusipsiRe-0.5
Subfornical organipsiSFO-0.5
Zona incertaipsiZI-0.5
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM-10
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV-10
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA-0.5
Bed nucleus of the stria terminalis medial division posterolateral partipsiBSTMPL-0.5
Bed nucleus of the stria terminalis ventral partipsiBNSTv-0.5
Bed nucleus of the stria terminalis ventral lateral partipsiBNSTvL-0.5
Dorsal portion of the neocortexipsiNEOCXD-10
Precommissural nucleusipsiPrC-10
Dorsal horn of spinal cordipsiDHMES-10
Intermediate zone of spinal cordipsiIzMES-10
Intermediolateral cell columnipsiIML-10
Spinal cord lamina 10ipsiMESL10-10
Cervical segment 8ipsiCS8-10
Thoracal segment 1ipsiT1-10
Thoracal segment 7ipsiT7-10
Thoracal segment 8ipsiT8-10
Intermediolateral cell column T8ipsiIMLT83
Dorsal horn T8ipsiDHT83
Thoracal segment 9ipsiT9-10
Intermediolateral cell column T9ipsiIMLT93
Intermediomedial cell column T9ipsiIMMT93
Dorsal horn T9ipsiDHT93
Spinal cord layer 5 T9ipsiSCL5T93
Spinal cord layer 7 T9ipsiSCL7T93
Thoracal segment 10ipsiT10-10
Intermediolateral cell column T10ipsiIMLT103
Intermediomedial cell column T10ipsiIMMT103
Area X T10ipsiSCL10T103
Dorsal horn T10ipsiDHT103
Spinal cord layer 5 T10ipsiSCL5T103
Spinal cord layer 7 T10ipsiSCL7T103
Thoracal segment 11ipsiT11-10
Intermediolateral cell column T11ipsiIMLT113
Intermediomedial cell column T11ipsiIMMT113
Area X T11ipsiSCL10T113
Dorsal horn T11ipsiDHT113
Spinal cord layer 5 T11ipsiSCL5T113
Spinal cord layer 7 T11ipsiSCL7T113
Thoracal segment 12ipsiT12-10
Intermediolateral cell column T12ipsiIMLT123
Intermediomedial cell column T12ipsiIMMT123
Area X T12ipsiSCL10T123
Dorsal horn T12ipsiDHT123
Spinal cord layer 5 T12ipsiSCL5T123
Spinal cord layer 7 T12ipsiSCL7T123
Thoracal segment 13ipsiT13-10
Intermediolateral cell column T13ipsiIMLT133
Intermediomedial cell column T13ipsiIMMT133
Area X T13ipsiSCL10T133
Dorsal horn T13ipsiDHT133
Spinal cord layer 5 T13ipsiSCL5T133
Spinal cord layer 7 T13ipsiSCL7T133
Lumbar segment 1ipsiL1-10
Intermediolateral cell column L1ipsiIMLL13
Intermediomedial cell column L1ipsiIMML13
Area X L1ipsiSCL10L13
Dorsal horn L1ipsiDHL13
Spinal cord layer 5 L1ipsiSCL5L13
Spinal cord layer 7 L1ipsiSCL7L13
Lumbar segment 2ipsiL2-10
Intermediolateral cell column L2ipsiIMLL23
Intermediomedial cell column L2ipsiIMML23
Area X L2ipsiSCL10L23
Dorsal horn L2ipsiDHL23
Spinal cord layer 5 L2ipsiSCL5L23
Spinal cord layer 7 L2ipsiSCL7L23
Spinal cord layer 9 L2ipsiSCL9L23
Lumbar segment 3ipsiL3-10
Dorsal horn L3ipsiDHL33
Spinal cord layer 9 L3ipsiSCL9L33
Lumbar segment 4ipsiL4-10
Dorsal horn L4ipsiDHL43
Spinal cord layer 9 L4ipsiSCL9L43
Lumbar segment 5ipsiL5-10
Dorsal horn L5ipsiDHL53
Lateral ventral horn of spinal cordipsiLVHMES-10
Central ventral horn of spinal cordipsiVHMESc-10
Medial ventral horn of spinal cordipsiVHMESm-10
Dorsal horn of spinal cordcontraDHMES-10
Intermediate zone of spinal cordcontraIzMES-10
Intermediolateral cell columncontraIML-10
Intermediolateral cell column T8contraIMLT82
Intermediomedial cell column T8contraIMMT82
Dorsal horn T8contraDHT82
Intermediolateral cell column T9contraIMLT92
Intermediomedial cell column T9contraIMMT92
Dorsal horn T9contraDHT92
Intermediolateral cell column T10contraIMLT102
Intermediomedial cell column T10contraIMMT102
Area X T10contraSCL10T103
Dorsal horn T10contraDHT102
Intermediolateral cell column T11contraIMLT112
Intermediomedial cell column T11contraIMMT112
Area X T11contraSCL10T113
Dorsal horn T11contraDHT112
Intermediolateral cell column T12contraIMLT122
Intermediomedial cell column T12contraIMMT122
Area X T12contraSCL10T123
Dorsal horn T12contraDHT122
Intermediolateral cell column T13contraIMLT132
Intermediomedial cell column T13contraIMMT132
Area X T13contraSCL10T133
Dorsal horn T13contraDHT132
Intermediolateral cell column L1contraIMLL12
Intermediomedial cell column L1contraIMML12
Area X L1contraSCL10L13
Dorsal horn L1contraDHL12
Intermediolateral cell column L2contraIMLL22
Intermediomedial cell column L2contraIMML22
Area X L2contraSCL10L23
Dorsal horn L2contraDHL22
Intermediomedial cell column L3contraIMML32
Area X L3contraSCL10L33
Dorsal horn L3contraDHL32
Intermediomedial cell column L4contraIMML42
Area X L4contraSCL10L43
Dorsal horn L4contraDHL42
Intermediomedial cell column L5contraIMML52
Area X L5contraSCL10L53
Dorsal horn L5contraDHL52

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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