University of Rostock

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Rat connectome



Intermediomedial cell column L3 right


Abbreviation
IMML3
Color       
Superior regionsLumbar segment 3

SynonymsAbbr.Language
Intermediomedial cell column L3IMML3Eng

Output to

NameSideAbbr.WeightDetails
Lateral hypothalamic areacontraLH1
Medial division of the hypothalamuscontraMdH1
Posterior hypothalamic areacontraPHA-0.5
Submedius thalamic nucleuscontraSub3
Ventrobasal complex anterior partcontraVBa1
Central amygdaloid nucleus anterior partcontraCeAn-0.5
Ventral funiculuscontravf-2
MesencephalonipsiMEC1
Prerubral fieldipsiPR-3
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt1
Lateral hypothalamic areaipsiLH1
Medial division of the hypothalamusipsiMdH1
Posterior hypothalamic areaipsiPHA-0.5
ThalamusipsiT1
Anteromedial thalamic nucleusipsiAM-3
Paracentral thalamic nucleusipsiPC-3
Rhomboid thalamic nucleusipsiRh-3
Submedius thalamic nucleusipsiSub1.5
Reuniens thalamic nucleusipsiRe-3
Reuniens thalamic nucleus ventral partipsiReV-3
Ventrolateral thalamic nucleusipsiVL-3
Ventrobasal complexipsiVB-3
Ventrobasal complex anterior partipsiVBa0.5
Ventromedial thalamic nucleusipsiVM-3
Posterior groupipsiPTG-3
Ventral medial nucleus of the thalamusipsiVMT-3
Zona incertaipsiZI-0.5
Central amygdaloid nucleus anterior partipsiCeAn-0.5
Ventral funiculusipsivf-2
Lumbar epaxial musclescontraMuscLep2
Seminal vesiclecontraOrgRepSV-10
Bulbospongiosus muscleipsiMuscbsp-0.5
External urethral sphincter muscleipsiMuscEUS-0.5
Corpus cavernosumipsiOrgCC2
Ventral prostate glandipsiOrgProstV3
Vas deferensipsiOrgVasDef0.5
Seminal vesicleipsiOrgRepSV-10
Urinary bladderipsiOrgUrBLa-0.5
Urinary bladder baseipsiOrgUrBLaB-0.5

Input from

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschcontraDk1
Periaqueductal graycontraPAG1
Ventral tegmental area A10contraVTA1
Edinger Westphal nucleuscontraEW1
Anterior interposed nucleus rostral partcontraAINR1
Medial cerebellar nucleuscontraMed1
A5 noradrenaline cellscontraA50.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC1
Paramedian reticular nucleuscontraPMn1
Ventral reticular formationcontraVRF1
Reticular formation adjacent to the periaqueductal graycontraRFaPAG1
Pontine reticular nucleus oral partcontraPnO1
Pontine reticular nucleus caudal partcontraPNC1
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Lateral reticular nucleuscontraLRt1
Dorsomedial portion of the lateral reticular nucleuscontraLRtDM1
Medullary reticular nucleus dorsal partcontraMdDd1
Subcoeruleus nucleuscontraSubC1
Ambiguus nucleuscontraAmb1
Mesencephalic trigeminal nucleuscontraMe50.5
Principal sensory trigeminal nucleus rostral partcontraPr5ro0.5
Spinal trigeminal nucleus caudal partcontraSp5C1
Medial part of the spinal trigeminal nucleus caudal part magnocellular layercontraSp5CmLM1
Spinal trigeminal nucleus interpolar partcontraSp5I1
Spinal trigeminal nucleus oral partcontraSp5O2
Gelatinous layer of the caudal spinal trigeminal nucleuscontraGe51
Spinal vestibular nucleuscontraSpVe2
Nucleus YcontraY0
Subnucleus fcontraVncf2
Subnucleus XcontraVncX0
Subnucleus SvcontraVncSv0
Superior vestibular nucleuscontraSuVe2
Medial vestibular nucleuscontraMVe2
Lateral vestibular nucleuscontraLVe1
Z cell group of the vestibular complexcontraZVES0
Nucleus of the solitary tractcontraSol1
Dorsal motor nucleus of vaguscontra101
Dorsal raphe nucleuscontraDR1
Superior central raphe nucleuscontraCS1
Raphe magnus nucleuscontraRMg1
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa1
Cuneate nucleuscontraCu1
Cuneate nucleus lateral partcontraCuLa1
Gracile nucleus principal partcontraGr1
Retroambiguus nucleuscontraRAmb1
HypothalamuscontraHYPO-0.5
Lateral hypothalamic areacontraLH-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Suprachiasmatic nucleuscontraSCh-0.5
Retrochiasmatic areacontraRCh-0.5
Nucleus of the fields of ForelcontraF-0.5
Zona incerta medial partcontraZIm-0.5
Region around the fornixcontraraf-0.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Medial agranular prefrontal cortex rostral partcontrarAGm-0.5
Primary somatosensory cortexcontraS1-0.5
Secondary somatosensory cortexcontraS2-0.5
Nucleus of the posterior commissurecontraPCom1
Nucleus of DarkschewitschipsiDk2
Periaqueductal grayipsiPAG2
Red nucleus ventrolateral partipsiRveL1
Ventral tegmental area A10ipsiVTA2
Laterodorsal tegmental nucleusipsiLDTg-0.5
Edinger Westphal nucleusipsiEW2
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA71
Locus coeruleusipsiLC2
Prepositus nucleusipsiPr-0.5
Paramedian reticular nucleusipsiPMn2
Ventral reticular formationipsiVRF2
Reticular formation adjacent to the periaqueductal grayipsiRFaPAG2
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus caudal partipsiPNC2
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Lateral reticular nucleusipsiLRt2
Dorsomedial portion of the lateral reticular nucleusipsiLRtDM2
Medullary reticular nucleus dorsal partipsiMdDd2
Subcoeruleus nucleusipsiSubC2
Ambiguus nucleusipsiAmb2
Area postremaipsiAP1
Hypoglossal nucleus rostral partipsi12Sr-0.5
Mesencephalic trigeminal nucleusipsiMe51
Principal sensory trigeminal nucleus rostral partipsiPr5ro1
Spinal trigeminal nucleus caudal partipsiSp5C2
Medial part of the spinal trigeminal nucleus caudal part magnocellular layeripsiSp5CmLM2
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O1
Gelatinous layer of the caudal spinal trigeminal nucleusipsiGe52
Spinal vestibular nucleusipsiSpVe1
Nucleus YipsiY0
Subnucleus fipsiVncf1
Subnucleus XipsiVncX0
Subnucleus SvipsiVncSv0
Superior vestibular nucleusipsiSuVe1
Medial vestibular nucleusipsiMVe1
Lateral vestibular nucleusipsiLVe2
Z cell group of the vestibular complexipsiZVES0
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract commissural partipsiSolC-0.5
Medial part of the commissural subnucleusipsiMSolC3
Dorsal motor nucleus of vagusipsi103
Dorsal raphe nucleusipsiDR2
Superior central raphe nucleusipsiCS2
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
Cuneate nucleusipsiCu2
Cuneate nucleus lateral partipsiCuLa2
Gracile nucleus principal partipsiGr2
Nucleus of RolleripsiRo-0.5
Ventrolateral part of the rostral portion of the dorsal accessory oliveipsiIODRVL3
Retroambiguus nucleusipsiRAmb2
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Retrochiasmatic areaipsiRCh-0.5
Nucleus of the fields of ForelipsiF-0.5
Zona incerta medial partipsiZIm-0.5
Region around the fornixipsiraf-0.5
Nucleus of the posterior commissureipsiPCom2
Area X C1ipsiSCL10C12
Spinal cord layer 5 C1ipsiSCL5C12
Spinal cord layer 6 C1ipsiSCL6C12
Spinal cord layer 4 C1ipsiSCL4C12
Spinal cord layer 1 C1ipsiSCL1C12
Spinal cord layer 7 C1ipsiSCL7C12
Spinal cord layer 8 C1ipsiSCL8C12
Spinal cord layer 9 C1ipsiSCL9C12
Sciatic nerveipsisci-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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