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Rat connectome



Intermediolateral cell column L1 left


Abbreviation
IMLL1
Color       
Superior regionsLumbar segment 1

SynonymsAbbr.Language
Intermediolateral cell column L1IMLL1Eng

SubregionsSide
Intermediolateral cell column pars funicularis L1left
Intermediolateral cell column pars principalis L1left
Intermediolateral cell column pars spinalis L1left
Sympathetic preganglionic cell column L1left

Output to

NameSideAbbr.WeightDetails
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB1
Koelliker Fuse nucleusipsiKF-0.5
Lateral parabrachial nucleusipsiLPB3
Nucleus of the solitary tractipsiSol1
Paraventricular hypothalamic nucleusipsiPa-0.5
Sympathoadrenal preganglionic neuronsipsiSymAPreGang1
Lumbar segment 1ipsiL1-1
Dorsal root ganglion L3ipsiDRGL3-0.5
Dorsal root ganglion L4ipsiDRGL4-0.5
Dorsal root ganglion L5ipsiDRGL5-0.5
Dorsal root ganglion L6ipsiDRGL6-0.5
Lateral parabrachial nucleuscontraLPB1.5
Lumbar sympathetic ganglia level L 1ipsiAutoLSGL1-0.5
Lumbar sympathetic ganglia level L 5ipsiAutoLSGL5-0.5
Sympathetic chain between L4-L5ipsiAutoLSGL4L53
Inferior mesenteric ganglionipsiAutoimg-0.5
Celiac ganglionipsiAutoCel-0.5
Pelvic ganglionipsiAutoPeG3
Tibial nerveipsitibial-0.5
Pelvic ganglioncontraAutoPeG1
Tibial nervecontratibial-0.5
Ventral stomach wallipsiOrgsStomVWS-0.5
Ventral stomach wallcontraOrgsStomVWS-0.5
ColonipsiOrgsColonS3
Distal colonipsiOrgsColonDi-0.5
Distal coloncontraOrgsColonDi-0.5
Hindpaw skinipsiOrgHPS-10
Tail skinipsiOrgBSTail-10
Adrenal glandipsiADRE-0.5
Adrenal medullaipsiOrgsAM1
Adductor caudae dorsalis muscleipsiMuscAdCaDo2
HindlimbipsiMuscHi-10
Lumbar epaxial musclesipsiMuscLep3
Bulbocavernosus muscleipsiMuscBCV-0.5
Bulbospongiosus muscleipsiMuscbsp-10
Ischiocavernosus muscleipsiMuscicav-10
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10
Femoral bone marrowipsiOrgSkFemM3
PeritoneumipsiOrgPeri-0.5
Mammary glandipsiOrgMamG-0.5
OvaryipsiOrgOvar-0.5
CervixipsiOrgUTC2
Middle layer of the middle portion of the uterine hornipsiOrgUTmLmph-0.5
EpididymisipsiOrgEpi-0.5
PenisipsiOrgPenis3
Corpus cavernosumipsiOrgCC3
Corpus spongiosumipsiOrgSPG1
ProstateipsiOrgProst2
Ventral prostate glandipsiOrgProstV2
TestisipsiOrgTest-0.5
Vas deferensipsiOrgVasDef-0.5
Seminal vesicleipsiOrgRepSV-10
KidneyipsiOrgsKid-0.5
Urinary bladderipsiOrgUrBLa-0.5
Detrusor muscle of the urinary bladderipsiOrgUrBLaDe3
Trigone of the urinary bladderipsiOrgUrBLaT-10
Lumbar epaxial musclescontraMuscLep2
Musculus abductor caudae dorsaliscontraMuscAbdCaDo-10
Femoral bone marrowcontraOrgSkFemM-0.5
OvarycontraOrgOvar-0.5
Middle layer of the middle portion of the uterine horncontraOrgUTmLmph-0.5
EpididymiscontraOrgEpi-0.5
Corpus cavernosumcontraOrgCC-0.5
Ventral prostate glandcontraOrgProstV0.5
Seminal vesiclecontraOrgRepSV-10

Input from

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG-0.5
Dorsomedial periaqueductal grayipsiDMPAG-0.5
Lateral periaqueductal grayipsiLPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Periventricular gray matteripsiPVG-0.5
Red nucleus magnocellular partipsiRMC-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Edinger Westphal nucleusipsiEW-0.5
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA7-0.5
Barringtons nucleusipsiBar-0.5
Locus coeruleusipsiLC2
Reticulotegmental nucleusipsiRETn-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF0.5
Parabrachial nucleus dorsal partipsiPBD-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV1
Medial subnucleus reticularis ventralisipsiMSRV1
Subcoeruleus nucleusipsiSubC-0.5
Medulla oblongataipsiMeOb-0.5
Ambiguus nucleusipsiAmb-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca0.5
Caudal raphe nucleiipsiRANc3
Dorsal raphe nucleusipsiDR-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe obscurus nucleus caudal partipsiRObc-0.5
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medullaipsiCVLM-0.5
Rostral ventrolateral medullaipsiRVLM0.5
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi2
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area posterior partipsiLHAp0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC0.5
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic nucleusipsiPH-0.5
Arcuate nucleusipsiArc-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP1
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa1
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP0.5
Ventral part of the medial paraventricular hypothalamic nucleus magnocellular partipsiPaMagMv1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular hypothalamic nucleus parvocellular division lateroposterior subnucleiipsiPavPoLP3
Paraventricular hypothalamic nucleus parvocellular division ventral partipsiPavPoV0.5
Paraventricular nucleus lateral parvocellular partipsiPaLp3
A11 dopamine cellsipsiA111
Perifornical nucleusipsiPeF3
Retrochiasmatic areaipsiRCh-0.5
Basal retrochiasmatic areaipsiBRCh1
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Tuber cinereum areaipsiTC-0.5
Prelimbic cortexipsiPrL-0.5
Infralimbic cortexipsiIL1
Spinal cord interneuronsipsiMESin-0.5
Dorsal root ganglion L3ipsiDRGL3-10
Dorsal root ganglion L4ipsiDRGL4-0.5
Dorsal root ganglion L5ipsiDRGL5-10
Dorsal root ganglion L6ipsiDRGL6-10
A5 noradrenaline cellscontraA50.5
Locus coeruleuscontraLC0.5
Koelliker Fuse nucleuscontraKF0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Gigantocellular reticular nucleus ventral partcontraGiV0.5
Medial subnucleus reticularis ventraliscontraMSRV1
Medulla oblongatacontraMeOb-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract caudal partcontraSolca0.5
Caudal raphe nucleicontraRANc1
Raphe magnus nucleuscontraRMg1
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa1
Rostral ventrolateral medullacontraRVLM0.5
Nucleus interfascicularis hypoglossicontraNIFH-0.5
Paragigantocellular reticular nucleuscontraPGi1
Lateral paragigantocellular nucleuscontraLPGi3
Lateral zonecontraLHA2
Lateral hypothalamic areacontraLH0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleus lateral parvocellular partcontraLPPa0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisioncontraPavPoD0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partcontraPavPoV0.5
A11 dopamine cellscontraA110.5
Perifornical nucleuscontraPeF2
Retrochiasmatic areacontraRCh-0.5
Parafascicular thalamic nucleus prerubral partcontraPFPR0.5
Infralimbic cortexcontraIL1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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