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Rat connectome



Kidney right


Abbreviation
OrgsKid
Color       
Superior regionsUrinary system

SynonymsAbbr.Language
KidneyOrgsKidEng

SubregionsSide
Smooth muscle layer of the renal pelvisright
Subepithelial layer of the renal pelvis right
Epithel of the renal pelvisright
Vicinity of glomeruliright
Beneath renal capsuleright
Renal medullaright
Renal papillaright
Kidney hilusright
Renal cortexright
Rostral pole of the kidneyright
Caudal pole of the kidneyright

Output to

NameSideAbbr.WeightDetails
Dorsal root ganglion T6contraDRGT60
Dorsal root ganglion T7contraDRGT70
Dorsal root ganglion T8contraDRGT80
Dorsal root ganglion T9contraDRGT90
Dorsal root ganglion T10contraDRGT100
Dorsal root ganglion T11contraDRGT110
Dorsal root ganglion T12contraDRGT120
Dorsal root ganglion T13contraDRGT130
Dorsal root ganglion L1contraDRGL10
Dorsal root ganglion L2contraDRGL20
MyelencephalonipsiMYC-0.5
Medulla oblongataipsiMeOb-0.5
Intermediolateral cell columnipsiIML-0.5
Dorsal root ganglion T6ipsiDRGT6-2
Dorsal root ganglion T7ipsiDRGT7-0.5
Dorsal root ganglion T8ipsiDRGT8-0.5
Dorsal root ganglion T9ipsiDRGT9-0.5
Dorsal root ganglion T10ipsiDRGT10-0.5
Dorsal root ganglion T11ipsiDRGT11-0.5
Dorsal root ganglion T12ipsiDRGT12-0.5
Dorsal root ganglion T13ipsiDRGT13-0.5
Dorsal root ganglion L1ipsiDRGL1-0.5
Dorsal root ganglion L2ipsiDRGL2-0.5
Dorsal root gangliaipsiDRG-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG2
Dorsolateral periaqueductal graycontraDLPAG-0.5
Dorsomedial periaqueductal graycontraDMPAG-0.5
Periaqueductal gray rostral partcontraPAGR-0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Red nucleuscontraR-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Edinger Westphal nucleuscontraEW-0.5
A5 noradrenaline cellscontraA52
A7 noradrenaline cellscontraA7-0.5
Barringtons nucleuscontraBar-0.5
Ventral part of the midrostral Barringtons nucleuscontraVMirBar-0.5
Locus coeruleuscontraLC2
Locus coeruleus ventral partcontraLCv-0.5
Parapyramidal nucleuscontraPPy-0.5
Deep mesencephalic nucleuscontraDpMe-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Subcoeruleus nucleuscontraSubC-0.5
C3 adrenaline cellscontraC3-0.5
Ambiguus nucleuscontraAmb3
Area postremacontraAP-0.5
Perifacial zonecontraP7-0.5
Nucleus of the solitary tractcontraSol-0.5
Dorsal motor nucleus of vaguscontra103
Raphe nucleicontraRAN1
Caudal raphe nucleicontraRANc2
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Caudal ventrolateral medullacontraCVLM1
Rostral ventrolateral medullacontraRVLM3
Dorsal paragigantocellular nucleuscontraDPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Ventromedial medulla oblongatacontraMeObvm-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm0.5
Preoptic regioncontraPREO1
Lateral preoptic areacontraLPO-0.5
Medial preoptic areacontraMPA-0.5
Median preoptic nucleuscontraMnPO-0.5
Ventrolateral preoptic nucleuscontraVLPO-0.5
Ventromedial preoptic nucleuscontraVMPO-0.5
Vascular organ of the lamina terminaliscontraVOLT1
Dorsomedial hypothalamic nucleuscontraDMHy1
Lateral hypothalamic areacontraLH1
Lateral hypothalamic area perifornical partcontraPFx-0.5
Anterior hypothalamic areacontraAHA1
Dorsal hypothalamic areacontraDA-0.5
Parastriatal nucleuscontraPS-0.5
Posterior hypothalamic areacontraPHA-0.5
Posterior hypothalamic nucleuscontraPH1
Ventromedial hypothalamic nucleuscontraVMH0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]contraPaAM-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Paraventricular hypothalamic nucleuscontraPa1
Paraventricular hypothalamic nucleus magnocellular divisioncontraPaMag-0.5
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisioncontraPavPoD-0.5
Paraventricular hypothalamic nucleus parvocellular division posterior partcontraPavPoP-0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partcontraPavPoV-0.5
Paraventricular nucleus ventromedial parvocellular partcontraPaVMp-0.5
Paraventricular nucleus medial partcontraPame-0.5
Periventricular hypothalamic nucleuscontraPe-0.5
Suprachiasmatic nucleuscontraSCh2
Suprachiasmatic nucleus dorsomedial partcontraSCnDM-0.5
Perifornical nucleuscontraPeF-0.5
Retrochiasmatic areacontraRCh-0.5
Subfornical organcontraSFO2
Zona incertacontraZI0.5
Tuber cinereum areacontraTC-0.5
Bed nucleus of the stria terminalis ventral partcontraBNSTv-0.5
Dorsolateral entorhinal cortexcontraDLEnt1
Anterior cingulate cortexcontraACC0.5
Prelimbic cortexcontraPrL0.5
Infralimbic cortexcontraIL0.5
Insular cortexcontraICX1
Perirhinal cortexcontraA351
Ectorhinal cortexcontraA361
Dorsal peduncular cortexcontraDP0.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Lateral agranular prefrontal cortex layer 5contraAGlL54
Medial prefrontal cortexcontramPFC0.5
Medial agranular prefrontal cortexcontraAGm-0.5
Medial agranular prefrontal cortex layer 5contraAGmL54
Primary somatosensory cortex layer 5contraS1L51
Spinal cord lamina 7contraMESL7-0.5
Intermediolateral cell column T4contraIMLT42
Central autonomic nucleus of thoracal segment 5contraCAAT51
Intercalated nucleus T5contraIClT5-0.5
Intermediolateral cell column T5contraIMLT52
Central autonomic nucleus of thoracal segment 6contraCAAT61
Dorsal root ganglion T6contraDRGT6-0.5
Intercalated nucleus T6contraIClT6-0.5
Intermediolateral cell column T6contraIMLT62
Central autonomic nucleus of thoracal segment 7contraCAAT71
Dorsal root ganglion T7contraDRGT7-0.5
Intercalated nucleus T7contraIClT7-0.5
Intermediolateral cell column T7contraIMLT72
Lateral funiculus of thoracal segment 7contraLfT7-0.5
Central autonomic nucleus of thoracal segment 8contraCAAT81
Dorsal root ganglion T8contraDRGT8-0.5
Intercalated nucleus T8contraIClT8-0.5
Intermediolateral cell column T8contraIMLT82
Dorsal root ganglion T9contraDRGT9-0.5
Intercalated nucleus T9contraIClT90.5
Intermediolateral cell column T9contraIMLT92
Lateral funiculus of thoracal segment 9contraLfT9-0.5
Dorsal root ganglion T10contraDRGT10-0.5
Intercalated nucleus T10contraIClT100.5
Intermediolateral cell column T10contraIMLT102
Dorsal root ganglion T11contraDRGT11-0.5
Intercalated nucleus T11contraIClT110.5
Intermediolateral cell column T11contraIMLT112
Lateral funiculus of thoracal segment 11contraLfT11-0.5
Dorsal root ganglion T12contraDRGT12-0.5
Intercalated nucleus T12contraIClT120.5
Intermediolateral cell column T12contraIMLT121
Lateral funiculus of thoracal segment 12contraLfT12-0.5
Dorsal root ganglion T13contraDRGT13-0.5
Intermediolateral cell column T13contraIMLT131
Dorsal root ganglion L1contraDRGL1-0.5
Intermediolateral cell column pars principalis L1contraIMLPL11
Dorsal root ganglion L2contraDRGL2-0.5
Dorsal root ganglion L3contraDRGL3-0.5
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF-0.5
Periaqueductal grayipsiPAG2
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Dorsomedial periaqueductal grayipsiDMPAG-0.5
Periaqueductal gray rostral partipsiPAGR-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Edinger Westphal nucleusipsiEW-0.5
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA7-0.5
Barringtons nucleusipsiBar-0.5
Ventral part of the midrostral Barringtons nucleusipsiVMirBar-0.5
Locus coeruleusipsiLC2
Locus coeruleus ventral partipsiLCv-0.5
Parapyramidal nucleusipsiPPy-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Medullary reticular nucleusipsiMdD-10
Ventral medullary reticular formationipsiVMurF-0.5
Subcoeruleus nucleusipsiSubC1
C3 adrenaline cellsipsiC3-0.5
Area postremaipsiAP1
Perifacial zoneipsiP7-0.5
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract dorsomedial partipsiSolDM-0.5
Raphe nucleiipsiRAN1
Caudal raphe nucleiipsiRANc2
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
Ventral lateral medulla oblongataipsiMVL-0.5
Caudal ventrolateral medullaipsiCVLM1
Rostral ventrolateral medullaipsiRVLM3
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Ventromedial medulla oblongataipsiMeObvm-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Lamina terminalisipsiLTer-0.5
Preoptic regionipsiPREO1
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA2
Median preoptic nucleusipsiMnPO1
Ventrolateral preoptic nucleusipsiVLPO-0.5
Ventromedial preoptic nucleusipsiVMPO-0.5
Vascular organ of the lamina terminalisipsiVOLT1
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area perifornical partipsiPFx-0.5
Anterior hypothalamic areaipsiAHA1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-10
Parastriatal nucleusipsiPS-0.5
Posterior hypothalamic areaipsiPHA-0.5
Posterior hypothalamic nucleusipsiPH1
Ventromedial hypothalamic nucleusipsiVMH1
Periventricular zoneipsiPVZ-10
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM-0.5
Posterior magnocellular subdivision of the paraventricular hypothalamic nucleusipsiPaPoM-0.5
Paraventricular hypothalamic nucleus parvicellular part dorsomedial partipsiPaPcDM-0.5
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa-0.5
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Nucleus paraventricularis magnocellular partipsiPaMa-10
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]ipsiPaAM-0.5
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag-0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo-0.5
Posteroventral portion of the medial parvicellular division of the paraventricular nucleusipsiPVPaMep-10
Paraventricular nucleus ventromedial parvocellular partipsiPaVMp-0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partipsiPavPoV-0.5
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP-0.5
Paraventricular hypothalamic nucleus parvocellular ventromedial subdivisionipsiPavPovm-10
Paraventricular nucleus medial partipsiPame-0.5
Periventricular hypothalamic nucleusipsiPe-0.5
Suprachiasmatic nucleusipsiSCh2
Suprachiasmatic nucleus dorsomedial partipsiSCnDM-0.5
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic areaipsiRCh2
Subfornical organipsiSFO2
Zona incertaipsiZI0.5
Tuber cinereum areaipsiTC-0.5
Lateral funiculusipsilf-0.5
Deep part of the dorsolateral funiculusipsiddlft-0.5
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis ventral partipsiBNSTv-0.5
Visceral dysgranular insular cortexipsiDIv1
Lateral agranular prefrontal cortexipsiAGl2
Medial agranular prefrontal cortexipsiAGm-0.5
Dorsal horn of spinal cordipsiDHMES-0.5
Ventral gray of spinal cordipsiVGMES3
Dorsal aspects of the gray matteripsiDGMES3
Intermediolateral cell columnipsiIML-0.5
Spinal cord lamina 7ipsiMESL7-0.5
Spinal cord lamina 5ipsiMESL5-0.5
Spinal cord lamina 3ipsiMESL3-0.5
Spinal cord lamina 4ipsiMESL4-0.5
Spinal cord lamina 10ipsiMESL10-0.5
Spinal cord lamina 1ipsiMESL1-0.5
Spinal cord lamina 2ipsiMESL2-0.5
Intercalated nucleus T1ipsiICLT13
Intermediolateral cell column T1ipsiIMLT1-0.5
Intercalated nucleus T2ipsiIClT23
Intermediolateral cell column T2ipsiIMLT2-0.5
Intercalated nucleus T3ipsiIClT33
Intermediolateral cell column T3ipsiIMLT32
Intercalated nucleus T4ipsiIClT43
Intermediolateral cell column T4ipsiIMLT42
Intercalated nucleus T5ipsiIClT53
Intermediolateral cell column T5ipsiIMLT52
Central autonomic nucleus of thoracal segment 5ipsiCAAT51
Dorsal root ganglion T6ipsiDRGT6-0.5
Intercalated nucleus T6ipsiIClT63
Intermediolateral cell column T6ipsiIMLT62
Area X T6ipsiSCL10T6-0.5
Lateral funiculus of thoracal segment 6ipsiLfT6-0.5
Central autonomic nucleus of thoracal segment 6ipsiCAAT61
Dorsal root ganglion T7ipsiDRGT7-0.5
Intercalated nucleus T7ipsiIClT73
Intermediolateral cell column T7ipsiIMLT72
Lateral funiculus of thoracal segment 7ipsiLfT70.5
Central autonomic nucleus of thoracal segment 7ipsiCAAT71
Dorsal root ganglion T8ipsiDRGT81
Intercalated nucleus T8ipsiIClT83
Intermediolateral cell column T8ipsiIMLT83
Lateral funiculus of thoracal segment 8ipsiLfT8-0.5
Central autonomic nucleus of thoracal segment 8ipsiCAAT81
Dorsal root ganglion T9ipsiDRGT91
Intercalated nucleus T9ipsiIClT93
Intermediolateral cell column T9ipsiIMLT93
Lateral funiculus of thoracal segment 9ipsiLfT90.5
Central autonomic nucleus of thoracal segment 9ipsiCAAT91
Dorsal root ganglion T10ipsiDRGT101.5
Intercalated nucleus T10ipsiIClT103
Intermediolateral cell column T10ipsiIMLT104
Area X T10ipsiSCL10T10-0.5
Lateral funiculus of thoracal segment 10ipsiLfT10-0.5
Central autonomic nucleus of thoracal segment 10ipsiCAAT101
Dorsal root ganglion T11ipsiDRGT112
Intercalated nucleus T11ipsiIClT113
Intermediolateral cell column T11ipsiIMLT113
Lateral funiculus of thoracal segment 11ipsiLfT110.5
Central autonomic nucleus of thoracal segment 11ipsiCAAT111
Dorsal root ganglion T12ipsiDRGT122.5
Intercalated nucleus T12ipsiIClT123
Intermediolateral cell column T12ipsiIMLT122
Lateral funiculus of thoracal segment 12ipsiLfT120.5
Central autonomic nucleus of thoracal segment 12ipsiCAAT121
Dorsal root ganglion T13ipsiDRGT133
Intercalated nucleus T13ipsiIClT133
Intermediolateral cell column T13ipsiIMLT131
Lateral funiculus of thoracal segment 13ipsiLfT13-0.5
Central autonomic nucleus of thoracal segment 13ipsiCAAT131
Dorsal root ganglion L1ipsiDRGL12.5
Intercalated nucleus L1ipsiIClL1-0.5
Intermediolateral cell column L1ipsiIMLL1-0.5
Intermediolateral cell column pars principalis L1ipsiIMLPL1-0.5
Area X L1ipsiSCL10L1-0.5
Lateral funiculus of lumbar segment 1ipsiLfL1-0.5
Dorsal root ganglion L2ipsiDRGL22
Dorsal root ganglion L3ipsiDRGL3-0.5
Ventral horn of spinal cordipsiVHMES-0.5
Nodose ganglioncontraAutoNoG-0.5
Paravertebral sympathetic gangliaipsiAutoPaGTSym-0.5
Thoracic sympathetic ganglion at level T 6ipsiAutoTSG6-0.5
Thoracic sympathetic ganglion at level T 7ipsiAutoTSG7-0.5
Thoracic sympathetic ganglion at level T 8ipsiAutoTSG8-0.5
Thoracic sympathetic ganglion at level T 9ipsiAutoTSG9-0.5
Thoracic sympathetic ganglion at level T 10ipsiAutoTSG10-0.5
Thoracic sympathetic ganglion at level T 11ipsiAutoPaGTsym110.5
Thoracic sympathetic ganglion at level T 12ipsiAutoPaGTsym123
Thoracic sympathetic ganglion at level T 13ipsiAutoPaGTsym133
Lumbar sympathetic ganglia level L 1ipsiAutoLSGL13
Lumbar sympathetic ganglia level L 2ipsiAutoLSGL20.5
Lumbar sympathetic ganglia level L 3ipsiAutoLSGL3-0.5
Lumbar sympathetic ganglia level L 4ipsiAutoLSGL4-0.5
Suprarenal ganglionipsiAutoSupra0.5
Small ganglia in the greater splanchnic nerveipsiAutoParGSG-0.5
Renal ganglionipsiAutoParGRe-0.5
Celiac ganglionipsiAutoCel-0.5
Superior mesenteric ganglionipsiAutoSmes0.5
Nodose ganglionipsiAutoNoG-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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