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Rat connectome



Interpeduncular nucleus left


Abbreviation
IP
Color       
Superior regionsTelencephalon

SynonymsAbbr.Language
Interpeduncular nucleusIPEng
Interpeduncular nucleusIPNEng

SubregionsSide
Interpeduncular nucleus apical subnucleusleft
Interpeduncular nucleus caudal subnucleusleft
Interpeduncular nucleus central subnucleusleft
Interpeduncular nucleus dorsal subnucleusleft
Interpeduncular nucleus dorsolateral partleft
Interpeduncular nucleus inner posteriorleft
Interpeduncular nucleus intermediate subnucleusleft
Interpeduncular nucleus lateral subnucleusleft
Interpeduncular nucleus medial partleft
Interpeduncular nucleus paramedian partleft
Interpeduncular nucleus rostral subnucleusleft
Interpeduncular nucleus rostrocaudal subnucleusleft
Interpeduncular nucleus rostrodorsal subnucleusleft
Interpeduncular nucleus rostrolateral subnucleusleft
Interpeduncular nucleus rostroventral partleft
Interpeduncular nucleus ventral partleft
Interpedunculotegmental tractleft
Mediolateral part of Interpeduncular nucleusleft
Interpeduncular nucleus perivascular zoneleft
Medioventral interpeduncular nucleusleft
Interpeduncular nucleus dorsocaudal partleft
Interpeduncular nucleus rostrocaudal axisleft
Interpeduncular nucleus dorsomedial partleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG2
Central grey caudal areaipsicCG3
Nuclei of the lateral lemniscusipsiNLL1
Periaqueductal grayipsiPAG2
Ventrolateral periaqueductal grayipsiVLPAG0
Inferior colliculusipsiICOL-0.5
Ventral division of the caudal inferior colliculusipsiICOLCV-0.5
Central nucleus of the inferior colliculusipsiCIC-0.5
Rostrocaudal extent of the inferior colliculusipsiRCeICOL-0.5
Superior colliculusipsiSC-0.5
Tegmental areaipsiTGA1
Central tegmental field dorsal partipsiTGACd1
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA3
Peripeduncular nucleusipsiPP3
Middle part of the retrorubral fieldipsiRRmi0
Laterodorsal tegmental nucleusipsiLDTg1.5
Ventral tegmental nucleusipsiVTg2
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus central partipsiDTgC3
Dorsal tegmental nucleus lateral partipsiDLTN1.5
Pedunculopontine tegmental nucleusipsiPPTg2
Paraflocculus ventral partipsiPFlv-0.5
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 10ipsiCERL10-0.5
FlocculusipsiFl-0.5
Locus coeruleusipsiLC2
Nucleus incertusipsiNI-0.5
Dorsomedial tegmental areaipsiDMTg-0.5
Pontine reticular nucleusipsiPRN-0.5
Lateral parabrachial nucleusipsiLPB1
Hypoglossal nucleusipsi12S-0.5
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR3
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS1.5
Basal nucleus MeynertipsiB0
Substantia innominataipsiSI2
Preoptic regionipsiPREO-0.5
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA2.5
Magnocellular preoptic nucleusipsiMCPO0
Medial preoptic nucleusipsiMPO2.5
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR1.5
Lateral hypothalamic areaipsiLH3
Dorsolateral hypothalamusipsiDLH-0.5
Lateral hypothalamic area perifornical partipsiPFx1.5
Lateral hypothalamic area posterior partipsiLHAp2
Lateral hypothalamic nucleusipsiLHN2
Lateral zone tuberal levelipsiLHt2
Medial division of the hypothalamusipsiMdH0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe0.5
Anterior part of the anterior hypothalamic nucleusipsiAHna2
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Parastriatal nucleusipsiPS0
Ventromedial hypothalamic nucleusipsiVMH0
Ventromedial hypothalamic nucleus central partipsiVMHC0
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL0
Paraventricular hypothalamic nucleus anterior parvicellular subdivisionipsiaPavPo1
Suprachiasmatic nucleusipsiSCh3
Nucleus proper rostral partipsiSOnPr0.5
Supraoptic nucleus dorsal partipsiSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV0.5
Mammillary bodyipsiCMAM0
Lateral mammillary nucleusipsiLM1
Supramammillar nucleusipsiSuM2
A8 dopamine cells retrorubral group lateral partipsiRRFL0
A8 dopamine cells retrorubral group medial partipsiRRFm0
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic areaipsiRCh0
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL3
Gelatinosus thalamic nucleus rostral partipsiGro2
Paracentral thalamic nucleusipsiPC2
Paracentral thalamic nucleus caudal partipsiPC-c0
Paracentral thalamic nucleus rostral partipsiPC-r0
Parafascicular thalamic nucleusipsiPF3
Parafascicular thalamic nucleus lateral partipsiPFL2
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh0
Medial group of the dorsal thalamusipsiMED1
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD3
Mediodorsal thalamic nucleus lateral partipsiMDL1
Mediodorsal thalamic nucleus medial partipsiMDM3
Submedius thalamic nucleusipsiSub1
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus posterior partipsiPVP0
Reuniens thalamic nucleusipsiRe1
Reuniens thalamic nucleus caudomedial divisionipsiRecm2
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventromedial thalamic nucleusipsiVM1
Ventromedial thalamic nucleus caudal partipsiVMc0
Oval paracentral thalamic nucleusipsiOPC0
HabenulaipsiHAB3
Lateral habenular nucleusipsiLHb1
Lateral habenular nucleus medial partipsiLHbM0.5
Medial habenular nucleusipsiMHb3
Medial forebrain bundleipsimfb1
Stria medullaris of the thalamusipsism-2
Amygdaloid complexipsiAC-0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd-0.5
Interstitial nucleus of the stria terminalisipsiBSTis-0.5
Amygdalopiriform transition areaipsiAPir1
Globus pallidusipsiGP1
Ventral pallidumipsiVP1
Accumbens nucleusipsiAc-0.5
Caudate putamenipsiCPu-0.5
HippocampusipsiHIPP-0.5
Dentate gyrusipsiDG-0.5
Dorsal hippocampus dentate gyrusipsiDDG3
Ventral hippocampus dentate gyrusipsiVDG3
Posterior hippocampusipsiHIPPpo-0.5
Fornixipsif-2
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortex ventral partipsiVLEA2
Lateral entorhinal cortex ventromedial partipsiVMEAL3
Anterior cingulate cortexipsiACC1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL-0.5
NeocortexipsiNEOCX-0.5
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm1
Lateral orbital cortexipsiLO1
Olfactory bulb A16ipsiMOB3
Olfactory tubercleipsiTuO0
Septal regionipsiSER-0.5
Lateral septal nucleusipsiLS3
Lateral septal nucleus intermediate partipsiLSI2.5
Lateral septal nucleus ventral partipsiLSV1.5
Septofimbrial nucleusipsiSFi-0.5
Lateral ventricleipsiLV-0.5
Central graycontraCG0
Nuclei of the lateral lemniscuscontraNLL1
Central tegmental field dorsal partcontraTGACd1
Peripeduncular nucleuscontraPP0
Laterodorsal tegmental nucleuscontraLDTg1
Ventral tegmental nucleuscontraVTg1
Dorsal tegmental nucleuscontraDTg2
Pedunculopontine tegmental nucleuscontraPPTg0.5
Paraflocculus ventral partcontraPFlv-0.5
FlocculuscontraFl-0.5
Locus coeruleuscontraLC1
Nucleus incertus pars dissipatacontraNId2
Lateral parabrachial nucleuscontraLPB0.5
Raphe nucleicontraRAN-0.5
Dorsal raphe nucleuscontraDR-0.5
Median raphe nucleuscontraMnR3
Nucleus of the horizontal limb of the diagonal bandcontraHDB1
Lateral preoptic areacontraLPO0.5
Medial preoptic areacontraMPA1
Medial preoptic nucleuscontraMPO1
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR0.5
Lateral hypothalamic areacontraLH1
Lateral hypothalamic area perifornical partcontraPFx0.5
Dorsal hypothalamic areacontraDA0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0
Supraoptic nucleus dorsal partcontraSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]contraSOV-0.5
Central medial thalamic nucleuscontraCM1
Centrolateral thalamic nucleuscontraCL1
Paracentral thalamic nucleuscontraPC1
Medial group of the dorsal thalamuscontraMED1
Mediodorsal thalamic nucleuscontraMD1
Lateral habenular nucleuscontraLHb1
Medial habenular nucleuscontraMHb2
Medial forebrain bundlecontramfb1
Anterior cingulate cortexcontraACC1
Prelimbic cortexcontraPrL1
NeocortexcontraNEOCX-0.5
Medial agranular prefrontal cortexcontraAGm1
Lateral septal nucleuscontraLS1
Lateral septal nucleus intermediate partcontraLSI1.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Central gray lateral partipsiCGL-0.5
Central grey caudal areaipsicCG2
Central gray pons partipsiCGP-0.5
Fasciculus retroflexusipsifr3
Medial longitudinal fasciculusipsimlf3
Parabigeminal nucleusipsiPBG1
Periaqueductal grayipsiPAG3
Lateral pontine tegmentumipsiLPTG1
Tegmental areaipsiTGA-0.5
Ventral tegmental area A10ipsiVTA2
Paranigral nucleusipsiPN-0.5
Laterodorsal tegmental nucleusipsiLDTg4
Laterodorsal tegmental nucleus medial partipsiLDTgM2
Caudal part of the laterodorsal tegmental nucleusipsiLDTgC-0.5
Laterodorsal tegmental nucleus rostral halfipsiLDTgrh3
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus caudal partipsiDTgCa0
Dorsal tegmental nucleus central partipsiDTgC-0.5
Dorsal tegmental nucleus dorsal partipsiDTgD3
Dorsal tegmental nucleus dorsomedial partipsiDTgDM3
Dorsal tegmental nucleus lateral partipsiDLTN-0.5
Dorsal tegmental nucleus ventral partipsiDTgV0
Ventromedial part of the ventral aprt of the dorsal tegmental nucleusipsiDTgVVM3
Pedunculopontine tegmental nucleusipsiPPTg2
Edinger Westphal nucleusipsiEW1.5
Deep cerebellar nucleiipsiDNC0
A7 noradrenaline cellsipsiA70.5
Locus coeruleusipsiLC1
Locus coeruleus rostral partipsiLCRo3
Nucleus incertusipsiNI3
Nucleus incertus pars compactaipsiNIc-0.5
Nucleus incertus pars dissipataipsiNId-0.5
Parabrachial nucleus dorsal partipsiPBD0
Parabrachial nucleus ventral partipsiPBV0
Gigantocellular reticular nucleusipsiGi-0.5
Medullary reticular nucleusipsiMdD1
Medullary reticular nucleus dorsal partipsiMdDd2
Sphenoid nucleusipsiSph-0.5
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Mediocaudal hypoglossal nucleusipsi12Smc-0.5
Nucleus of the solitary tractipsiSol0
Nucleus of the solitary tract caudal partipsiSolca-0.5
Raphe nucleiipsiRAN2
Caudal raphe nucleiipsiRANc-0.5
Dorsal raphe nucleusipsiDR4
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus rostral partipsiDRr2
Median raphe nucleusipsiMnR4
Central raphe nucleusipsiCRN2.5
Medial raphe nucleusipsiMeR1
Superior central raphe nucleusipsiCS3
Median raphe nucleus caudal portionipsiMnRc1
Median raphe nucleus midrostrocaudal partipsiMnRmrc3
Paramedian raphe nucleusipsiPMnR-0.5
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Medial septum dorsal band complexipsiMSDB-0.5
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB4
Lateral part of the nucleus of the horizontal limb of the diagonal bandipsiLPHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Nucleus of the vertical limb of the diagonal band lateral partipsiVDBL0
Diagonal band of Broca rostrocaudal extentipsiDBBrc1
Horizontal limb of the rostrocaudal extent of the Diagonal band of BrocaipsiDBBrcHL2
Medial septal nucleusipsiMS3
Collum lateral to the diagonal bandipsiCLDB1
Basal nucleus MeynertipsiB1
Substantia innominataipsiSI2
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA0
Medial preoptic area dorsolateral partipsiMPADL0
Medial preoptic area periventricular partipsiMPApv0
Preoptic nucleusipsiPREn-0.5
Magnocellular preoptic nucleusipsiMCPO4
Medial preoptic nucleusipsiMPO1
HypothalamusipsiHYPO2
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area caudal partipsiLHc-0.5
Caudal lateral hypothalamic area at the level of the mammillary regionipsiLHcMAM-0.5
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0.5
Lateral hypothalamic area perifornical partipsiPFx2
Posterolateral hypothalamusipsiPLHY0
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic nucleusipsiPH1
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus central partipsiVMHC0
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL0
Arcuate nucleusipsiArc2
Paraventricular hypothalamic nucleusipsiPa1
Preoptic periventricular nucleusipsiPePO-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Lateral mammillary nucleusipsiLM-0.5
Medial mammillary nucleusipsiMMn2
Premammillary nucleusipsiPMAN4
Supramammillar nucleusipsiSuM2
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
Anteromedial thalamic nucleusipsiAM2
Parafascicular thalamic nucleusipsiPF-0.5
Mediodorsal thalamic nucleusipsiMD3
Subfornical organipsiSFO2
Dorsal caudal extent of the subfornical organipsiSFOdc-0.5
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus rostrocaudal partipsiRtrc2
Zona incertaipsiZI-0.5
HabenulaipsiHAB3
Lateral habenular nucleusipsiLHb2
Lateral habenular nucleus central partipsiLHbc2
Lateral habenular nucleus lateral partipsiLHbL1.5
Lateral habenular nucleus lateral part magnocellular subnucleusipsiLHbLMc1.5
Lateral habenular nucleus medial partipsiLHbM3
Lateral habenular nucleus medial part marginal subnucleusipsiLHbMMg2
Central subnucleus of the medial part of the lateral habenular nucleusipsiLHbMCe2
Lateral habenular nucleus oval subnucleusipsiLHbos0.5
Medial habenular nucleusipsiMHb4
Medial habenular nucleus caudal partipsiMHbc-0.5
Medial habenular nucleus lateral partipsiMHbL2
Medial habenular nucleus medial partipsiMHbm2
Medial habenular nucleus ventrolateral partipsiMHbVL3
Medial habenular nucleus rostrocaudal partipsiMHbrc3
Medial forebrain bundleipsimfb2
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM-0.5
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr1
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt0
Central amygdaloid nucleus medial divisionipsiCeM-1
Central amygdaloid nucleus ventral partipsiCeV1
ClaustrumipsiCl1
Medial globus pallidusipsiMGP0
Ventral pallidumipsiVP0
Ventral pallidum medial partipsiVPm2
Accumbens nucleusipsiAc0
Medial accumbens shellipsiAcbShm2
Accumbens nucleus ventromedial partipsiAcvm-0.5
Bed nucleus of the anterior commissureipsiBAC0
Ventral hippocampal commissureipsivhc2
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc1
Anterior cingulate cortexipsiACC0
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Cingulate cortex caudal intermediate partipsiCg2i-0.5
Prelimbic cortexipsiPrL1
Prelimbic cortex dorsal partipsiPrLd0.5
Prelimbic cortex ventral partipsiPrLv0.5
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA0
Frontal cortex area 1ipsiFr1-0.5
Frontal cortex area 2ipsiFr20
Lateral prefrontal cortexipsilPFC3
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO0
Tufted cells of the glomerular layer of the olfactory bulbipsiOBgloTC1
Mitral cells of the olfactory bulbipsiMiC3
Semilunar nucleusipsiSL3
Dorsal medial septumipsiDMS-0.5
Dorsolateral septumipsiDLSER0
Lateral septal nucleusipsiLS0.5
Lateral septal nucleus caudal partipsiLSc-0.5
Lateral septal nucleus most caudal aspectipsiLSmca2
Lateral septal nucleus dorsal partipsiLSD0
Lateral septal nucleus intermediate partipsiLSI0
Lateral septal nucleus rostral partipsiLSr-0.5
Lateral septal nucleus ventral partipsiLSV0
Anteroposterior extension of the lateral septal nucleusipsiLSap0
Ventroposterior extension of the lateral septal nucleusipsiLSvp0
Posterior septal complexipsiPSC0
Septofimbrial nucleus ventral partipsiSFiv1
Triangular septal nucleusipsiTS3
Ventral triangular septal nucleusipsiVTS1
Dorsal triangular septal nucleusipsiDTS-0.5
Ventrolateral septal regionipsiVLSER0
Caudal septumipsiCSER1
Gray matter of the floor of the 4th ventricleipsiGMF4V3
Central graycontraCG1
Central gray lateral partcontraCGL-0.5
Fasciculus retroflexuscontrafr-0.5
Dorsal tegmental nucleuscontraDTg3
Dorsal tegmental nucleus lateral partcontraDLTN3
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC1
Nucleus incertuscontraNI3
Medullary reticular nucleus dorsal partcontraMdDd1
Supragenual nucleuscontraSGe0.5
Dorsal raphe nucleus caudal partcontraDRC3
Medial septal nucleuscontraMS-2
Lateral preoptic areacontraLPO0.5
HypothalamuscontraHYPO2
Posterior hypothalamic nucleus caudal partcontraPHCa0
Posterior hypothalamic nucleus rostral partcontraPHRo0
Ventromedial hypothalamic nucleus central partcontraVMHC0
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0
Arcuate nucleuscontraArc2
Supramammillar nucleuscontraSuM2
Anteromedial thalamic nucleuscontraAM2
HabenulacontraHAB3
Lateral habenular nucleuscontraLHb1
Lateral habenular nucleus medial partcontraLHbM1
Medial habenular nucleuscontraMHb-0.5
Medial habenular nucleus ventrolateral partcontraMHbVL3
Cingulate cortex caudal intermediate partcontraCg2i-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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