University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Dorsal raphe nucleus median part left


Abbreviation
DRM
Color       
Superior regionsDorsal raphe nucleus

SynonymsAbbr.Language
Dorsal raphe nucleus median partDRM 
Serotonergic median dorsal raphe nucleus Eng
Midline raphe nucleus  
Median dorsal raphe nucleus Eng
Dorsal raphe nucleus middle partDRmiEng
Median part of the dorsal raphe nucleus  
Dorsal raphe nucleus midline partDRmidEng

SubregionsSide
Dorsal raphe nucleus middle part core regionleft
Dorsal raphe nucleus middle part lateral regionleft
Dorsal raphe nucleus middle part shell regionleft
Dorsal raphe nucleus middle part ventral regionleft
Posterior portion of the midline dorsal raphe nucleusleft

Output to

NameSideAbbr.WeightDetails
Superior colliculusipsiSC2
Ventral tegmental area rostral ventromedial partipsiVTARVM-0.5
Raphe magnus nucleusipsiRMg-0.5
Subcommissural organipsiSCO2
Lateral hypothalamic areaipsiLH-0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh3
Lateral posterior thalamic nucleusipsiLP2
Medial striatumipsiCPum2
Caudal striatumipsiCPuc1
Rostral striatumipsiCPur1
Lateral striatumipsiCPul2
Glia limitans layeripsigliaLim3
Primary visual cortexipsiV12
Secondary visual cortex medial areaipsiV2M2
Secondary visual cortex lateral areaipsiV2L2
Dorsal geniculate nucleus lateral partipsiDLGl2
Ventral lateral geniculate nucleusipsiVLG2
3d ventricleipsi3V-0.5
Supraependymal terminals of 3d ventricleipsiset3V3
Subependymal terminals under the ependyma of the 3d ventricleipsisete3V3
4th ventricleipsi4V3
AqueductipsiAq3
Ependyma and subependymal layeripsiE2
Gray matter of spinal cordipsiGMES0.5
Intermediolateral cell column pars principalisipsiIMLp3
Superior colliculuscontraSC1
Lateral posterior thalamic nucleuscontraLP1
Medial striatumcontraCPum1
Lateral striatumcontraCPul1
Primary visual cortexcontraV11
Secondary visual cortex medial areacontraV2M1
Secondary visual cortex lateral areacontraV2L1
Dorsal geniculate nucleus lateral partcontraDLGl1
Ventral lateral geniculate nucleuscontraVLG1
Gray matter of spinal cordcontraGMES0.5
Intermediolateral cell column pars principaliscontraIMLp1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Dorsolateral periaqueductal grayipsiDLPAG3
Lateral periaqueductal grayipsiLPAG3
Ventrolateral periaqueductal grayipsiVLPAG3
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA-2
Barringtons nucleusipsiBar1
Locus coeruleus caudal partipsiLCca1
Locus coeruleus rostral partipsiLCRo1
Dorsomedial tegmental areaipsiDMTg1
Prepositus nucleusipsiPr1
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleusipsiPRN1
Gigantocellular reticular nucleusipsiGi1
Subcoeruleus nucleusipsiSubC1
Spinal trigeminal nucleus caudal part dorsomedial partipsiSp5CDM-0.5
Superior vestibular nucleusipsiSuVe1
Median raphe nucleusipsiMnR1
Raphe interpositus nucleusipsiRIP1
Raphe magnus nucleusipsiRMg1
Dorsal paragigantocellular nucleusipsiDPGi1
Lateral paragigantocellular nucleusipsiLPGi1
Diagonal band of BrocaipsiDBB1
Substantia innominata ventral partipsiSIV-0.5
Medial tuberal nucleusipsiMTuN2
Medial preoptic areaipsiMPA3
Lateral preoptic nucleusipsiLPN4
Ventrolateral preoptic nucleusipsiVLPO2
Ventromedial preoptic nucleusipsiVMPO1
Tuberomammillary nucleusipsiTuM1
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area perifornical partipsiPFx1.5
Anterior hypothalamic areaipsiAHA2
Posterior hypothalamic areaipsiPHA2
Periventricular zoneipsiPVZ1
Arcuate nucleusipsiArc2
Paraventricular hypothalamic nucleusipsiPa1
Supraoptic nucleus [Supraoptic region]ipsiSO1
Supramammillar nucleusipsiSuM1
Retrochiasmatic areaipsiRCh1
Supraoculomotor periaqueductal grayipsiSu31
HabenulaipsiHAB-0.5
Lateral habenular nucleusipsiLHb-0.5
Lateral habenular nucleus lateral part magnocellular subnucleusipsiLHbLMc1.5
Lateral habenular nucleus medial part parvocellular subnucleusipsiLHbMPc1.5
Central subnucleus of the medial habenular nucleusipsiCMHb1.5
Posterior habenulaipsiPHAB2
Basolateral amygdaloid nucleusipsiBL1.5
Basomedial amygdaloid nucleusipsiBM1.5
Bed nucleus of the stria terminalisipsiBST1
Cortical amygdaloid nucleusipsiCAn1.5
Medial amygdaloid nucleus intermediate levelipsiMeiL-0.5
Medial amygdaloid nucleus medial partipsiMeM1.5
Medial amygdaloid nucleus rostral partipsiMeRo-0.5
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL1
Medial prefrontal cortexipsimPFC-0.5
Lateral septal nucleusipsiLS-0.5
Dorsolateral periaqueductal graycontraDLPAG1
Substantia nigra compact part dorsal tiercontraSNCD1
Medial tuberal nucleuscontraMTuN1
Lateral hypothalamic areacontraLH1
Arcuate nucleus medial partcontraArcM1
Supraoptic nucleus [Supraoptic region]contraSO1
Basolateral amygdaloid nucleuscontraBL0.5
Basomedial amygdaloid nucleuscontraBM0.5
Cortical amygdaloid nucleuscontraCAn0.5
Medial amygdaloid nucleus medial partcontraMeM0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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