University of Rostock

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Rat connectome



Cortical amygdaloid nucleus right


Abbreviation
CAn
Color       
Superior regionsOlfactory amygdala

SynonymsAbbr.Language
 COA 
Nucleus corticalisNCO 
Cortical amygdalar area Eng
Cortical amygdaloid nucleusCAnEng
Cortical nuclei of the amygdala Eng

SubregionsSide
Anterior cortical amygdaloid nucleusright
Cortical amygdaloid nucleus rostral partright
Corticomedial amygdaloid nucleusright
Dorsal area of posterior part of cortical amygdaloid nucleusright
Posterior amygdaloid nucleus medial partright
Posterior amygdaloid nucleusright
Posterolateral cortical nucleusright
Superficial part of the cortical amygdaloid nucleusright
Cortical amygdaloid nucleus caudal partright
Anterodorsal cortical amygdaloid nucleusright
Lateral portion of the cortical amygdaloid nucleusright
Rostral portion of the cortical amygdalaright

Output to

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal graycontraDLPAG0
Lateral periaqueductal graycontraLPAG1
Ventrolateral periaqueductal graycontraVLPAG0
Ventral tegmental area A10contraVTA-0.5
Dorsal raphe nucleuscontraDR0.5
Dorsal raphe nucleus lateral wingcontraDRlw0.5
Dorsal raphe nucleus median partcontraDRM0.5
Paraventricular hypothalamic nucleuscontraPa0
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Basomedial amygdaloid nucleuscontraBM-0.5
Bed nucleus of the stria terminaliscontraBST0.5
Bed nucleus of the stria terminalis caudal part caudoventral regioncontraBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regioncontraBSTCapf1
Bed nucleus of the stria terminalis lateral divisioncontraBSTL3
Bed nucleus of the stria terminalis medial divisioncontraBSTM3
Bed nucleus of the stria terminalis supracommissural partcontraBSTsco-0.5
Cortical amygdaloid nucleuscontraCAn-0.5
Anterior cortical amygdaloid nucleuscontraACo-0.5
Medial amygdaloid nucleuscontraMe-0.5
Entorhinal cortexcontraEnt0
Prelimbic cortexcontraPrL1
Septal regioncontraSER0
Dorsolateral periaqueductal grayipsiDLPAG0
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG0
Central tegmental field lateral partipsiTGACL0
Dorsal raphe nucleusipsiDR1.5
Dorsal raphe nucleus lateral wingipsiDRlw1.5
Dorsal raphe nucleus median partipsiDRM1.5
Basal forebrainipsiBAF3
Dorsal endopiriform nucleusipsiDEn-1
Substantia innominata dorsal partipsiSID3
Medial preoptic areaipsiMPA1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anterior partipsiLHAa0.5
Anterior hypothalamic areaipsiAHA0.5
Posterior hypothalamic nucleusipsiPH2
Ventromedial hypothalamic nucleusipsiVMH0.5
Paraventricular hypothalamic nucleusipsiPa1
Periventricular hypothalamic nucleusipsiPe1
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus [Supraoptic region]ipsiSO1
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventral partipsiPMV-0.5
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Mediodorsal thalamic nucleus medial partipsiMDM1
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reuniens thalamic nucleus rostrolateral divisionipsiRerl2
Ventromedial thalamic nucleus caudal partipsiVMc0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt0.5
Reticular thalamic nucleus rostral partipsiRtr-10
Subparafascicular thalamic nucleus caudal partipsiSPFc1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Basolateral amygdaloid nucleusipsiBL-0.5
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL3
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Dorsal part of rostral bed nucleus of the stria terminalisipsiBSTdro3
Bed nucleus of the stria terminalis rostroventral partipsiBSTRV3
Bed nucleus of the stria terminalis supracommissural partipsiBSTsco-0.5
Central amygdaloid nucleusipsiCe-0.5
Nucleus of the lateral olfactory tractipsiLOT-0.5
Medial amygdaloid nucleusipsiMe-0.5
Medial amygdaloid nucleus dorsal tipipsiMeDT-0.5
ClaustrumipsiCl-0.5
StriatumipsiSTR-1
Accumbens nucleusipsiAc2
Ventral striatumipsiCPuv-0.5
Entorhinal cortexipsiEnt3
Lateral entorhinal cortexipsiLEnt2
Cingulate cortexipsiCg0
Prelimbic cortexipsiPrL1
Medial prefrontal cortexipsimPFC1
Olfactory tubercleipsiTuO-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS2

Input from

NameSideAbbr.WeightDetails
Central graycontraCG0.5
Midline group of the dorsal thalamuscontraMTN1
Paraventricular thalamic nucleuscontraPV1
Cortical amygdaloid nucleuscontraCAn-0.5
Anterior cortical amygdaloid nucleuscontraACo-0.5
Prepiriform cortexcontraPRPIR0
Infralimbic cortexcontraIL0.5
Central grayipsiCG1
Ventral tegmental area A10ipsiVTA-0.5
Peripeduncular nucleusipsiPP2
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId1
Central medial parabrachial nucleus waistipsiCMPBw2
Lateral parabrachial nucleus ventral partipsiLPBV2
Dorsal raphe nucleusipsiDR-0.5
Median raphe nucleusipsiMnR0
Caudal endopiriform regionipsiCEn-0.5
Central endopiriform systemipsiCEnN-0.5
Dorsal endopiriform nucleusipsiDEn-1
Rostral endopiriform regionipsiREn-0.5
Diagonal band of BrocaipsiDBB-0.5
Substantia innominataipsiSI1
Substantia innominata dorsal partipsiSID1
Substantia innominata ventral partipsiSIV-0.5
Medial preoptic areaipsiMPA0
Magnocellular preoptic nucleusipsiMCPO-0.5
HypothalamusipsiHYPO0.5
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0.5
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa1
Lateral hypothalamic area perifornical partipsiPFx2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo1
Ventromedial hypothalamic nucleusipsiVMH0.5
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM-0.5
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventral partipsiPMV-0.5
ThalamusipsiT0.5
Interoanteromedial thalamic nucleusipsiIAM-1
Central medial thalamic nucleusipsiCM-1
Central medial thalamic nucleus caudal partipsiCMca-0.5
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo2
Suprageniculate thalamic nucleusipsiSG2
Midline group of the dorsal thalamusipsiMTN3
Paratenial thalamic nucleusipsiPT2
Paratenial thalamic nucleus dorsomedial portionipsiPTdm-1
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus anterior partipsiPVA-0.5
Paraventricular thalamic nucleus anterior part dorsal portionipsiPVAd-1
Paraventricular thalamic nucleus dorsal partipsiPVdo-0.5
Paraventricular thalamic nucleus posterior partipsiPVP1.5
Nucleus reuniens median partipsiREm2
Reuniens thalamic nucleus anterior partipsiReAn-0.5
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Ansa peduncularisipsiape-2
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd1
Central amygdaloid nucleus lateral divisionipsiCeL-0.5
Central amygdaloid nucleus medial divisionipsiCeM-0.5
ClaustrumipsiCl-0.5
Ventral pallidumipsiVP1
Ventral striatumipsiCPuv-0.5
Field CA1 of hippocampus dorsalipsiCA1d2
Entorhinal cortexipsiEnt-0.5
Dorsolateral entorhinal cortexipsiDLEnt-0.5
Prepiriform cortexipsiPRPIR-0.5
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Prelimbic cortexipsiPrL0
Prelimbic cortex dorsal partipsiPrLd0
Prelimbic cortex ventral partipsiPrLv0.5
Infralimbic cortexipsiIL3
Frontal cortex area 2ipsiFr20
Temporal association area 2 ventral partipsiTe2V0
Agranular insular cortex ventral partipsiAIV2.5
Perirhinal cortexipsiA35-1
Dorsal peduncular cortexipsiDP2.5
Lateral orbital cortexipsiLO2.5
Medial orbital cortexipsiMO3
Ventral orbital cortexipsiVO0
Medial geniculate nucleus medial partipsiMGM2
Olfactory bulb A16ipsiMOB-0.5
Mitral cell layer of the olfactory bulbipsiMi-0.5
Ventral mitral cell layer of the olfactory bulbipsiMiV-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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