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Rat connectome



Suprachiasmatic nucleus dorsal division left


Abbreviation
SChd
Color       
Superior regionsSuprachiasmatic nucleus

SynonymsAbbr.Language
Suprachiasmatic nucleus dorsal divisionSChdEng
Nucleus suprachiasmaticus dorsalis Lat

SubregionsSide
Suprachiasmatic nucleus dorsal capleft
Suprachiasmatic nucleus dorsal borderleft

Output to

NameSideAbbr.WeightDetails
Medial eminence internal layeripsiMEI1
Median eminence external layeripsiMEeL1
Medial septal nucleusipsiMS1
Preoptic regionipsiPREO3
Medial preoptic areaipsiMPA3
Medial preoptic area dorsal partipsiMPAD-0.5
Medial preoptic area ventral partipsiMPAV0.5
Anterodorsal preoptic nucleusipsiADP3
Medial preoptic nucleusipsiMPO0
Preoptic region rostral partipsiPREOr3
Dorsomedial hypothalamic nucleusipsiDMHy2
Lateral zoneipsiLHA-0.5
Anterior hypothalamic areaipsiAHA-0.5
Anterior hypothalamic area dorsal partipsiAHAd3
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe3
Anteroventral preoptic nucleusipsiAnV0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic area at level of the posterior commissureipsiPHApc1
Cell-sparse zone between Pe and AHAipsicsMHA3
Between ventral border of Pa and dorsal border of AHAipsibvbMHA3
Cell-sparse zone dorsal and medial to VMH ipsicszMHA2
Along anteroventral preoptic nucleus and VOLTipsiavpMHA1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus cell sparse zone surrounding areaipsiVMHSurcs2
Anterior periventricular nucleusipsiPeA1
Arcuate nucleusipsiArc1.5
Area around the suprachiasmatic nucleusipsiAASCh3
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR3
Paraventricular hypothalamic nucleus caudal partipsiPaPoC3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Lateral to the paraventricular hypothalamic nucleus magnocellular division posterior partipsiLaTPa3
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP2
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
Paraventricular nucleus lateral parvocellular partipsiPaLp3
Paraventricular hypothalamic nucleus rostral partipsiPaRo3
Paraventricular nucleus medial partipsiPame0
Paraventricular nucleus ventral partipsiPaVe3
Subparaventricular hypothalamic nucleusipsiSubPa3
Preoptic periventricular nucleusipsiPePO3
Suprachiasmatic nucleusipsiSCh0
Medial mammillary nucleusipsiMMn1
Parafascicular thalamic nucleusipsiPF-0.5
Rhomboid thalamic nucleusipsiRh0.5
Mediodorsal thalamic nucleusipsiMD-0.5
Paratenial thalamic nucleusipsiPT4
Paraventricular thalamic nucleusipsiPV4
Reuniens thalamic nucleusipsiRe0.5
Zona incertaipsiZI-0.5
Lateral habenular nucleusipsiLHb-0.5
Bed nucleus of the stria terminalis caudal partipsiBSTCa1
Bed nucleus of the stria terminalis preoptic continuationipsiBSTpoc3
Intergeniculate leafipsiIGL1
Ventral lateral geniculate nucleusipsiVLG1
Lateral septal nucleusipsiLS2.5
Lateral septal nucleus intermediate part ventral subdivisionipsiLSVIV1
Lateral septal nucleus ventral partipsiLSV1
3d ventricleipsi3V-2
Medial eminence internal layercontraMEI-0.5
Median eminence external layercontraMEeL-0.5
Medial septal nucleuscontraMS-0.5
Medial preoptic areacontraMPA-0.5
Medial preoptic area dorsal partcontraMPAD-0.5
Medial preoptic area ventral partcontraMPAV-0.5
Anterodorsal preoptic nucleuscontraADP-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA-0.5
Anterior hypothalamic areacontraAHA-0.5
Anterior hypothalamic area dorsal partcontraAHAd1
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe-0.5
Anteroventral preoptic nucleuscontraAnV-0.5
Posterior hypothalamic areacontraPHA-0.5
Posterior hypothalamic area at level of the posterior commissurecontraPHApc-0.5
Cell-sparse zone between Pe and AHAcontracsMHA1
Between ventral border of Pa and dorsal border of AHAcontrabvbMHA-0.5
Cell-sparse zone dorsal and medial to VMH contracszMHA-0.5
Along anteroventral preoptic nucleus and VOLTcontraavpMHA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus cell sparse zone surrounding areacontraVMHSurcs-0.5
Anterior periventricular nucleuscontraPeA-0.5
Arcuate nucleuscontraArc-0.5
Area around the suprachiasmatic nucleuscontraAASCh-0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]contraPaMP1
Paraventricular hypothalamic nucleus magnocellular division posterior partcontraPaMagP-0.5
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo-0.5
Paraventricular nucleus lateral parvocellular partcontraPaLp1
Paraventricular hypothalamic nucleus rostral partcontraPaRo-0.5
Lateral to the paraventricular hypothalamic nucleus magnocellular division posterior partcontraLaTPa1
Preoptic periventricular nucleuscontraPePO-0.5
Suprachiasmatic nucleuscontraSCh3
Suprachiasmatic nucleus central divisioncontraSChc2
Medial mammillary nucleuscontraMMn-0.5
Rhomboid thalamic nucleuscontraRh-0.5
Paratenial thalamic nucleuscontraPT-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Reuniens thalamic nucleuscontraRe-0.5
Bed nucleus of the stria terminalis caudal partcontraBSTCa-0.5
Bed nucleus of the stria terminalis preoptic continuationcontraBSTpoc-0.5
Intergeniculate leafcontraIGL-0.5
Ventral lateral geniculate nucleuscontraVLG-0.5
Lateral septal nucleuscontraLS-0.5
Lateral septal nucleus intermediate part ventral subdivisioncontraLSVIV-0.5
Lateral septal nucleus ventral partcontraLSV-0.5

Input from

NameSideAbbr.WeightDetails
Nucleus incertus pars dissipataipsiNId1
Medial septal nucleusipsiMS1
Substantia innominataipsiSI1
Medial preoptic areaipsiMPA1
Medial preoptic nucleus lateral partipsiMPOL1
Ventral region of posterior hypothalamic nucleusipsiPHv2
Ventromedial hypothalamic nucleus rostral partipsiVMHR2
Arcuate nucleusipsiArc2
Paraventricular thalamic nucleus dorsal partipsiPVdo2
Paraventricular thalamic nucleus rostral partipsiPVr2
Subfornical organipsiSFO1
Subiculum ventral partipsiSv1
Intergeniculate leafipsiIGL1
Lateral septal nucleus medial partipsiLSM1
Lateral septal nucleus rostral partipsiLSr1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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