University of Rostock

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Rat connectome



Suprachiasmatic preoptic nucleus left


Abbreviation
PSCh
Color       
Superior regionsPeriventricular zone

SynonymsAbbr.Language
Suprachiasmatic preoptic nucleusPSCHEng
Suprachiasmatic preoptic nucleusPSChEng

Output to

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA1
Medial eminence internal layeripsiMEI1
Median eminence external layeripsiMEeL1
Medial septal nucleusipsiMS1
Medial preoptic areaipsiMPA3
Medial preoptic area dorsal partipsiMPAD3
Medial preoptic area ventral partipsiMPAV0.5
Anterodorsal preoptic nucleusipsiADP3
Medial preoptic nucleusipsiMPO0
Vascular organ of the lamina terminalisipsiVOLT3
Dorsomedial hypothalamic nucleusipsiDMHy2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral zoneipsiLHA3
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0.5
Lateral hypothalamic area perifornical partipsiPFx3
Anterior hypothalamic areaipsiAHA-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anteroventral preoptic nucleusipsiAnV0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic area at level of the posterior commissureipsiPHApc1
Cell-sparse zone between Pe and AHAipsicsMHA3
Between ventral border of Pa and dorsal border of AHAipsibvbMHA3
Cell-sparse zone dorsal and medial to VMH ipsicszMHA2
Along anteroventral preoptic nucleus and VOLTipsiavpMHA1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus cell sparse zone surrounding areaipsiVMHSurcs2
Anterior periventricular nucleusipsiPeA1
Arcuate nucleusipsiArc3
Area around the suprachiasmatic nucleusipsiAASCh3
Paraventricular hypothalamic nucleusipsiPa4
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP2
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
Paraventricular hypothalamic nucleus rostral partipsiPaRo3
Preoptic periventricular nucleusipsiPePO3
Suprachiasmatic nucleusipsiSCh0
Medial mammillary nucleusipsiMMn1
Rhomboid thalamic nucleusipsiRh0.5
Paratenial thalamic nucleusipsiPT4
Paraventricular thalamic nucleusipsiPV3
Reuniens thalamic nucleusipsiRe0.5
Optic tractipsiopt-2
Bed nucleus of the stria terminalis anterior divisionipsiBSTA3
Bed nucleus of the stria terminalis caudal partipsiBSTCa1
Bed nucleus of the stria terminalis preoptic continuationipsiBSTpoc3
Medial amygdaloid nucleusipsiMe1
Intergeniculate leafipsiIGL1
Ventral lateral geniculate nucleusipsiVLG1
Lateral septal nucleusipsiLS3
Lateral septal nucleus intermediate part ventral subdivisionipsiLSVIV1
Lateral septal nucleus ventral partipsiLSV1
Medial eminence internal layercontraMEI-0.5
Median eminence external layercontraMEeL-0.5
Medial septal nucleuscontraMS-0.5
Medial preoptic areacontraMPA-0.5
Medial preoptic area dorsal partcontraMPAD-0.5
Medial preoptic area ventral partcontraMPAV-0.5
Anterodorsal preoptic nucleuscontraADP-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA-0.5
Anterior hypothalamic areacontraAHA-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe-0.5
Anteroventral preoptic nucleuscontraAnV-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Posterior hypothalamic areacontraPHA-0.5
Posterior hypothalamic area at level of the posterior commissurecontraPHApc-0.5
Cell-sparse zone between Pe and AHAcontracsMHA1
Between ventral border of Pa and dorsal border of AHAcontrabvbMHA-0.5
Cell-sparse zone dorsal and medial to VMH contracszMHA-0.5
Along anteroventral preoptic nucleus and VOLTcontraavpMHA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus cell sparse zone surrounding areacontraVMHSurcs-0.5
Anterior periventricular nucleuscontraPeA-0.5
Arcuate nucleuscontraArc-0.5
Area around the suprachiasmatic nucleuscontraAASCh-0.5
Paraventricular hypothalamic nucleuscontraPa2
Paraventricular hypothalamic nucleus magnocellular division posterior partcontraPaMagP-0.5
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo-0.5
Paraventricular hypothalamic nucleus rostral partcontraPaRo-0.5
Preoptic periventricular nucleuscontraPePO-0.5
Medial mammillary nucleuscontraMMn-0.5
Rhomboid thalamic nucleuscontraRh-0.5
Paratenial thalamic nucleuscontraPT-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Reuniens thalamic nucleuscontraRe-0.5
Bed nucleus of the stria terminalis caudal partcontraBSTCa-0.5
Bed nucleus of the stria terminalis preoptic continuationcontraBSTpoc-0.5
Intergeniculate leafcontraIGL-0.5
Ventral lateral geniculate nucleuscontraVLG-0.5
Lateral septal nucleuscontraLS-0.5
Lateral septal nucleus intermediate part ventral subdivisioncontraLSVIV-0.5
Lateral septal nucleus ventral partcontraLSV-0.5

Input from

NameSideAbbr.WeightDetails
Dorsomedial hypothalamic nucleusipsiDMHy3
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Anterior hypothalamic area central partipsiAHAC3
Anterior hypothalamic nucleus ventromedial partipsiAHAvm2
Anterior hypothalamic nucleusipsiAHn-2
Anterior part of the anterior hypothalamic nucleusipsiAHna3
Subparaventricular zone of the hypothalamus perisuprachiasmatic regionipsiSBPVps4
Suprachiasmatic nucleus dorsomedial partipsiSCnDM4
Suprachiasmatic nucleus ventrolateral partipsiSCnVL4
Basal retrochiasmatic areaipsiBRCh1
Retrochiasmatic area lateral partipsiRChL3
Lateral septal nucleus ventral partipsiLSV3
Dorsomedial hypothalamic nucleuscontraDMHy-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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