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Rat connectome



Anterior hypothalamic nucleus left


Abbreviation
AHn
Color       
Superior regionsMedial zone

SynonymsAbbr.Language
Parvocellular nucleus of hypothalamus  
Fundamental gray substance  
Nucleus anterior hypothalami  
Anterior hypothalamic nucleusAHNEng
Nucleus hypothalamicus anteriorAHNLat
Anterior nucleus of hypothalamusAHNa 
Anterior hypothalamic nucleusAHnEng

SubregionsSide
Anterior hypothalamic nucleus rostral zoneleft
Anterior part of the anterior hypothalamic nucleusleft
Anterior hypothalamic nucleus ventral partleft
Anterior hypothalamic nucleus dorsomedial partleft
Anterior hypothalamic nucleus dorsolateral partleft
Anterior hypothalamic nucleus medial tipleft
Dorsal part of the anterior hypothalamic nucleusleft
Anterior hypothalamic nucleus caudal partleft
Anterior hypothalamic nucleus central partleft
Anterior hypothalamic nucleus posterior partleft

Output to

NameSideAbbr.WeightDetails
Central gray pons partipsiCGP-2
Periaqueductal grayipsiPAG3
Dorsal periaqueductal grayipsiDPAG4
Dorsolateral periaqueductal gray caudal partipsiPAGdlc3
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray medial partipsiPAGm1
Periaqueductal gray rostral most partipsiPAGRmo4
Rostralmost part of periaqueductal grayipsiPAGromo1
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG1
Periventricular gray matteripsiPVG0
Superior colliculus deep layersipsiSCd-0.5
Ventral tegmental area A10ipsiVTA1
Interfascicular nucleusipsiIF3
Peripeduncular nucleusipsiPP-0.5
Lateral tegmental nucleusipsiLTN-2
Dorsal tegmental nucleusipsiDTg1
CerebellumipsiCERE0
Locus coeruleusipsiLC0
Reticular systemipsiRF1
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleusipsiPRN1
Cuneiforme nucleusipsiCnF-2
Parabrachial nucleusipsiPB-2
Raphe nucleiipsiRAN-2
Dorsal raphe nucleusipsiDR0
Dorsal raphe nucleus caudal partipsiDRC1.5
Dorsal raphe nucleus lateral wingipsiDRlw1.5
Dorsal raphe nucleus rostral partipsiDRr1.5
Median raphe nucleusipsiMnR0
Central raphe nucleus dorsal partipsiCRNdp2
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg1
Median eminenceipsiME0.5
Diagonal band of BrocaipsiDBB1
Medial septal nucleusipsiMS1
Substantia innominataipsiSI3
Preoptic regionipsiPREO3
Lateral preoptic areaipsiLPO1
Lateral preoptic area medial partipsiLPOm3
Medial preoptic areaipsiMPA1
Medial preoptic nucleusipsiMPO1
Medial preoptic nucleus central partipsiMPOC2
Medial preoptic nucleus lateral partipsiMPOL3
Medial preoptic nucleus medial partipsiMPOM2
Ventrolateral preoptic nucleusipsiVLPO2
Ventromedial preoptic nucleusipsiVMPO-0.5
Dorsal tuberomammillary nucleusipsiDTM-2
HypothalamusipsiHYPO3
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR-0.5
Lateral zoneipsiLHA-2
Lateral hypothalamic area medial partipsiLHAm3
Lateral hypothalamic area perifornical partipsiPFx-2
Lateral hypothalamic area ventral partipsiLHAvp-2
Medial division of the hypothalamusipsiMdH2
Anterior hypothalamic area central partipsiAHAC3
Anterior hypothalamic area posterior partipsiAHAP3
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe3
Anterior part of the anterior hypothalamic nucleusipsiAHna2.5
Dorsal part of the anterior hypothalamic nucleusipsiAHnD1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus anterior partipsiDMA-2
Dorsomedial hypothalamic nucleus ventral partipsiDMV-2
Dorsomedial nucleus posterior partipsiDMHp-2
Posterior hypothalamic nucleusipsiPH-0.5
Subparaventricular zoneipsiSuPZ3
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus central partipsiVMHC3
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL-2
Dorsal part of the capsule of the ventromedial hypothalamic nucleusipsiVMHcapD3
Medial part of the capsule of the ventromedial hypothalamic nucleusipsiVMHcapM3
Mediobasal hypothalamus anterior partipsiMeHypoAnt2
Mediobasal hypothalamus posterior partipsiMeHypoP2
Periventricular zoneipsiPVZ-0.5
Anterior periventricular nucleusipsiPeA-2
Arcuate nucleusipsiArc-2
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Paraventricular nucleus of the hypothalamus magnocellular division medial magnocellular partipsiPaAMm3
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP3
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus dorsomedial capipsiPadmc3
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag-2
Paraventricular hypothalamic nucleus magnocellular division between PaLM and PaAMmipsiPaMagb3
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo-2
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP3
Ventral perinuclear paraventricular hypothalamic areaipsiPPaV3
Dorsal part of the posterior periventricular nucleusipsiPePd-2
Ventral part of the posterior periventricular nucleusipsiPePv1
Suprachiasmatic nucleusipsiSCh2
Cells surrounding suprachiasmatic nucleusipsiSChcs2.5
Suprachiasmatic preoptic nucleusipsiPSCh-2
Supraoptic decussationipsisox-2
Anterodorsal periventricular nucleusipsiPeAD3
Cell sparse capsuleipsiMAMcsc-0.5
Mammillary peduncleipsimp-2
Mammillothalamic tractipsimt-2
Premammillary nucleus dorsal partipsiPMD3
Ventral part of the premammillary nucleus dorsal partipsiPMDV4
Premammillary nucleus ventral partipsiPMV-2
Supramammillar nucleusipsiSuM-0.5
Supramammillar nucleus lateral partipsiSuML-2
Supramammillar nucleus medial partipsiSuMM2
A13 dopamine cellsipsiA131
Perifornical nucleus dorsal partipsiPeFD-0.5
Perifornical nucleus medial partipsiPeFM-0.5
Perifornical nucleus anterior partipsiPeFa0.5
Retrochiasmatic areaipsiRCh3
Anteromedial thalamic nucleusipsiAM-2
Anteromedial thalamic nucleus ventral partipsiAMV-2
Anteroventral thalamic nucleusipsiAV-2
Interoanterodorsal thalamic nucleusipsiIAD-2
Central medial thalamic nucleus rostral partipsiCMr-0.5
Rhomboid thalamic nucleus rostral areaipsiRhr-0.5
Mediodorsal thalamic nucleusipsiMD1
Mediodorsal thalamic nucleus dorsomedial partipsiMDdm1
Midline group of the dorsal thalamusipsiMTN-2
Paratenial thalamic nucleusipsiPT-0.5
Paratenial thalamic nucleus anterior partipsiPTa4
Paraventricular thalamic nucleusipsiPV-2
Paraventricular thalamic nucleus anterior partipsiPVA4
Paraventricular thalamic nucleus dorsal partipsiPVdo-2
Reuniens thalamic nucleusipsiRe-0.5
Reuniens thalamic nucleus caudomedial divisionipsiRecm2
Nucleus reuniens rostral divisionipsiRER-0.5
Nucleus reuniens rostral division anterior partipsiREa-0.5
Nucleus reuniens rostral division lateral partipsiREl-0.5
Nucleus reuniens rostral division ventral partipsiRERv-0.5
Reunienes thalamic nucleus rostromedial divisionipsiRerm3
Reuniens thalamic nucleus rostrolateral divisionipsiRerl2
Reuniens thalamic nucleus medial partipsiReMe-0.5
Reuniens thalamic nucleus rostroventral partipsiRerv3
Reuniens thalamic nucleus rostral partipsiReRo4
Reuniens thalamic nucleus ventrolateral zoneipsiRevL4
Reuniens thalamic nucleus anteroventral partipsiReav3
Laterodorsal thalamic nucleus rostral partipsiLDRo-2
Subparafascicular thalamic nucleus caudal partipsiSPFc2
Subparafascicular thalamic nucleus magnocellular partipsiSPFm-2
Subparafascicular thalamic nucleus medial partipsiSPFme2
Subparafascicular thalamic nucleus parvicellular partipsiSPFp-2
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Zona incerta caudal partipsiZIC1
Zona incerta medial partipsiZIm1
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb-2
Superficial pineal glandipsiSPi1
Corpus callosum rostral portionipsiccrp-2
Medial forebrain bundle at the level of the anterior commissureipsimfbac0
Medial forebrain bundle at the level of the lateral preoptic areraipsimfbLpa-2
Medial forebrain bundle at the level of the anterior hypothalamic nucleusipsimfbahn0
Medial forebrain bundle at the level of the lateral hypothalamusipsimfbLH0
Medial forebrain bundle at the level of the posterior hypothalamic nucleusipsimfbPH-2
Stria medullaris of the thalamusipsism-2
Amygdaloid complexipsiAC3
Anterior basomedial nucleusipsiBMA0.5
Posterior basomedial nucleusipsiBMP3
Basomedial amygdaloid nucleus posteromedial partipsiBMpm1
Lateral nucleus ventral portionipsiLAVp3
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior divisionipsiBSTA1
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD2
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif2.5
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt2.5
Central extended amygdala groupipsiCEXA-0.5
Central amygdaloid nucleus lateral division capsular partipsiCeC-1
Central amygdaloid nucleus lateral division ventral partipsiCeCv-0.5
Anterior amygdaloid areaipsiAA-2
Posterior amygdaloid nucleusipsiCOAp1
Medial amygdaloid nucleusipsiMe3
Accumbens nucleusipsiAc1
HippocampusipsiHIPP1
Field CA1 of hippocampus ventral partipsiCA1v-2
Field CA3 of hippocampus ventral partipsiCA3v-2
Subiculum ventral partipsiSv-2
Fornixipsif-2
Fimbriaipsifimb-2
Intermediate entorhinal cortexipsiIEnt-2
Medial entorhinal cortexipsiMEnt-2
Anterior cingulate cortexipsiACC-0.5
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Nucleus of the posterior commissureipsiPCom-0.5
Premammillary commissureipsipremamcos-2
Lateral geniculate complex ventromedial partipsiLGvm-2
Anterior olfactory nucleusipsiAON-2
Septal regionipsiSER3
Lateral septal nucleusipsiLS3
Lateral septal nucleus caudal partipsiLSc3
Lateral septal nucleus intermediate partipsiLSI3
Lateral septal nucleus rostral partipsiLSr3
Lateral septal nucleus very rostral tipipsiLSrt1
Lateral septal nucleus ventral partipsiLSV3
Septofimbrial nucleusipsiSFi1
Stria terminalisipsist-2
Periaqueductal graycontraPAG1
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray medial partcontraPAGm1
Ventral tegmental area A10contraVTA-2
Reticular systemcontraRF-2
Median eminencecontraME0.5
Preoptic regioncontraPREO-2
Lateral preoptic area rostral partcontraLPOr-2
Medial preoptic areacontraMPA-0.5
Median preoptic nucleuscontraMnPO-2
Ventrolateral preoptic nucleuscontraVLPO0.5
Anterior hypothalamic nucleuscontraAHn2
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Posterior hypothalamic nucleuscontraPH2
Ventromedial hypothalamic nucleuscontraVMH1
Supraoptic decussationcontrasox-2
Premammillary nucleus dorsal partcontraPMD3
Perifornical nucleus rostral partcontraPeFr-2
Paratenial thalamic nucleuscontraPT-2
Paraventricular thalamic nucleuscontraPV-2
Reuniens thalamic nucleus rostrolateral divisioncontraRerl2.5
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Amygdaloid complexcontraAC0
Bed nucleus of the stria terminaliscontraBST1
Bed nucleus of the stria terminalis caudal part caudoventral regioncontraBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regioncontraBSTCapf1
Bed nucleus of the stria terminalis lateral divisioncontraBSTL3
Bed nucleus of the stria terminalis medial divisioncontraBSTM3
Central amygdaloid nucleus lateral division capsular partcontraCeC0.5
Medial amygdaloid nucleuscontraMe0.5
Precommissural nucleuscontraPrC1
Lateral septal nucleuscontraLS1
Anterior cruciate ligamentipsiLigAntCru1
Anterior cruciate ligamentcontraLigAntCru1

Input from

NameSideAbbr.WeightDetails
Central gray pons partipsiCGP1
Ventral periaqueductal grayipsiVPAG1
Periventricular gray matteripsiPVG1
Dorsal tegmental nucleusipsiDTg1.5
Marginal nucleus of the superior cerebellar peduncleipsiMNscp0
PonsipsiP0
Locus coeruleusipsiLC0
Nucleus incertus pars compactaipsiNIc1
Parabrachial nucleusipsiPB1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleus external partipsiLPBE2
Medial parabrachial nucleus external partipsiMPBE2
Parabrachial nucleus ventral part medial portionipsiPBVM2
Dorsal raphe nucleusipsiDR1.5
Dorsal raphe nucleus rostral partipsiDRr3
Median raphe nucleusipsiMnR1.5
Superior central raphe nucleusipsiCS1.5
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg1
B6 subnucleusipsiB61
Diagonal band of BrocaipsiDBB-0.5
Medial preoptic areaipsiMPA3
Medial preoptic nucleusipsiMPO2
Medial preoptic nucleus lateral partipsiMPOL-2
Ventrolateral preoptic nucleusipsiVLPO-0.5
Dorsolateral preoptic regionipsiPREOdL-0.5
HypothalamusipsiHYPO3
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx3
Tuberal nucleusipsiTU1
Anterior hypothalamic areaipsiAHA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Posterior hypothalamic areaipsiPHA3
Posterior hypothalamic nucleus caudal partipsiPHCa3
Posterior hypothalamic nucleus rostral partipsiPHRo3
Ventromedial hypothalamic nucleus anterior partipsiVMHA-0.5
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL2.5
Suprachiasmatic nucleusipsiSCh-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Ventral hypothalamic regionipsiVHR-0.5
Supramammillar nucleus lateral part lateral subpartipsiSuMLL1
Supramammillar nucleus lateral part medial subpartipsiSuMLM2
Supramammillar nucleus medial partipsiSuMM2
RetinaipsiRET1
Medial lemniscusipsiml1
Anterior basolateral nucleusipsiBLA0
Posterior basolateral nucleusipsiBLP0.5
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP3
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM2
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV-1
Bed nucleus of the stria terminalis medial divisionipsiBSTM-1
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd-1
Central extended amygdala groupipsiCEXA-0.5
Central amygdaloid nucleus lateral divisionipsiCeL0
Central amygdaloid nucleus lateral division capsular partipsiCeC0
Central amygdaloid nucleus medial divisionipsiCeM0
Amygdalopiriform transition areaipsiAPir0.5
Anterior amygdaloid areaipsiAA0.5
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp0.5
Posterolateral cortical nucleusipsiPLCo0.5
Medial extended amygdalaipsiMEXA-1
Medial amygdaloid nucleus anterodorsal partipsiMeAD4
Medial amygdaloid nucleus anteroventral partipsiMeAV2
Medial amygdaloid nucleus posterodorsal partipsiMePD0.5
Medial amygdaloid nucleus posteroventral partipsiMePV4
Hippocampal septalipsiHIPPs3
Subiculum ventral partipsiSv3
Subiculum ventral distal partipsiSvd0
Midmediolateral caudal part of the ventral subiculumipsiSvcMM2
Subiculum ventral proximal partipsiSvp0
Infralimbic cortexipsiIL2
Medial orbital cortexipsiMO0
Ventral orbital cortexipsiVO0
Intergeniculate leafipsiIGL-0.5
Lateral septal nucleus dorsal partipsiLSD1
Central gray pons partcontraCGP0
Marginal nucleus of the superior cerebellar pedunclecontraMNscp0
Locus coeruleuscontraLC0
Dorsal raphe nucleus rostral partcontraDRr2.5
B6 subnucleuscontraB60
Medial preoptic nucleuscontraMPO-0.5
Tuberal nucleuscontraTU0.5
Anterior hypothalamic nucleuscontraAHn2
Ventromedial hypothalamic nucleus anterior partcontraVMHA-0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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