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Rat connectome

Field CA1 of hippocampus dorsal left

Abbreviation	CA1d
Color
Superior regions	Field CA1 of hippocampus

Synonyms	Abbr.	Language
Field CA1 of hippocampus dorsal	CA1d

Subregions	Side
Field CA1 of hippocampus dorsal layers	left
Field CA1 of hippocampus dorsal posterior	left

Output to

Name	Side	Abbr.	Weight
Dorsal endopiriform nucleus	ipsi	DEn	0
Ventral endopiriform nucleus	ipsi	VEn	0
Preoptic region	ipsi	PREO	1
Dorsal tenia tecta	ipsi	DTT	1
Ventral tenia tecta	ipsi	VTT	0
Anterior hypothalamic area around the fornix	ipsi	AHAdF	2
Tuberal area	ipsi	TA	1
Medial mammillary nucleus dorsal part	ipsi	MMnd	3
Subincertal nucleus	ipsi	SubI	1
Reuniens thalamic nucleus	ipsi	Re	1
Medial corticohypothalamic tract	ipsi	mcht	0
Postcommissural fornix	ipsi	fpc	-2
Basolateral amygdaloid nucleus	ipsi	BL	1
Anterior basolateral nucleus	ipsi	BLA	0
Posterior basolateral nucleus	ipsi	BLP	0
Basomedial amygdaloid nucleus	ipsi	BM	2
Anterior basomedial nucleus	ipsi	BMA	0
Posterior basomedial nucleus	ipsi	BMP	0
Lateral amygdaloid nucleus	ipsi	LA	1
Amygdalopiriform transition area	ipsi	APir	1
Cortical amygdaloid nucleus	ipsi	CAn	2
Anterior cortical amygdaloid nucleus	ipsi	ACo	0
Posterior amygdaloid nucleus	ipsi	COAp	0
Posterolateral cortical nucleus	ipsi	PLCo	0
Nucleus of the lateral olfactory tract	ipsi	LOT	2
Posteromedial cortical nucleus	ipsi	PMCo	0
Claustrum	ipsi	Cl	0
Rostral pole of the accumbens nucleus	ipsi	AcbRP	2
Accumbens nucleus ventral regions	ipsi	AcV	2
Hippocampus	ipsi	HIPP	-0.5
Dentate gyrus	ipsi	DG	1.5
Dentate gyrus molecular layer	ipsi	DGmL	0.5
Polymorph layer of the dentate gyrus	ipsi	DGpo	0.5
Field CA1 of hippocampus ventral part	ipsi	CA1v	0
Field CA3 of hippocampus	ipsi	CA3	3
Subiculum	ipsi	S	1
Subiculum dorsal part	ipsi	Sd	4
Subiculum ventral part	ipsi	Sv	0.5
Indusium griseum	ipsi	IG	0
Presubiculum	ipsi	PrS	1
Parasubiculum	ipsi	PaS	2
Postsubiculum	ipsi	Post	3
Lateral entorhinal cortex	ipsi	LEnt	3
Lateral entorhinal cortex lateral part	ipsi	LEntLa	0.5
Lateral entorhinal cortex medial part	ipsi	LEntM	0.5
Lateral entorhinal cortex intermediate part	ipsi	LEnti	1
Medial entorhinal cortex	ipsi	MEnt	3
Medial entorhinal cortex dorsal part	ipsi	MEntD	4
Medial entorhinal cortex lateral part	ipsi	MEntL	3
Medial entorhinal field medial part	ipsi	MEntFm	-0.5
Medial entorhinal cortex intermediate part	ipsi	MEntFim	-0.5
Piriform cortex	ipsi	Pir	1
Postpiriform transition area	ipsi	TR	2
Retrosplenial regions	ipsi	RS	2
Retrosplenial dorsal	ipsi	RSd	1
Retrosplenial ventral part	ipsi	RSPv	1.5
Retrosplenial ventral a	ipsi	RSv-a	0
Retrosplenial area ventral part zone b/c	ipsi	RSPv-bc	0
Retrosplenial cortex middle part layer 1	ipsi	RSmiL1	-0.5
Retrosplenial cortex middle part layer 2	ipsi	RSmiL2	-0.5
Retrosplenial cortex middle part layer 3	ipsi	RSmiL3	-0.5
Retrosplenial cortex middle part layer 4	ipsi	RSmiL4	-0.5
Retrosplenial cortex middle part layer 5	ipsi	RSmiL5	-0.5
Retrosplenial cortex middle part layer 6	ipsi	RSmiL6	-0.5
Retrosplenial agranular cortex	ipsi	RSA	0
Retrosplenial granular cortex	ipsi	RSGra	1
Retrosplenial granular cortex a region	ipsi	RSGa	1
Dorsal anterior cingulate cortex	ipsi	DACC	0
Ventral anterior cingulate cortex	ipsi	VACC	0
Prelimbic cortex	ipsi	PrL	1.5
Infralimbic cortex	ipsi	IL	1.5
Parietal cortex posterior area	ipsi	ParP	0
Temporal cortex	ipsi	TE	0
Temporal association cortex 1	ipsi	TeA	2
Auditory regions	ipsi	AU	0
Primary auditory cortex	ipsi	Au1	0
Ventral auditory areas	ipsi	AUDv	0
Agranular insular cortex dorsal part	ipsi	AID	0
Agranular insular cortex posterior part	ipsi	AIP	0
Agranular insular cortex ventral part	ipsi	AIV	0
Gustatory dysgranular insular cortex	ipsi	DIg	0
Granular insular cortex	ipsi	GI	0
Perirhinal cortex	ipsi	A35	1
Ectorhinal cortex	ipsi	A36	1
Postrhinal cortex	ipsi	POR	1
Motoric regions	ipsi	M	1.5
Lateral agranular prefrontal cortex	ipsi	AGl	0
Medial agranular prefrontal cortex	ipsi	AGm	0.5
Primary somatosensory cortex	ipsi	S1	0
Secondary somatosensory cortex	ipsi	S2	0
Primary visual cortex	ipsi	V1	0
Primary visual cortex binocular area	ipsi	V1B	0
Laterolateral cortical visual area	ipsi	VISll	1
Mediolateral cortical visual area	ipsi	VISlm	0
Posterolateral cortical visual area	ipsi	VISpl	0
Anteromedial cortical visual area	ipsi	VISam	0
Lateral orbital cortex	ipsi	LO	0
Ventral orbital cortex	ipsi	VO	0
Ventrolateral orbital area	ipsi	VLO	0
Precommissural fornix	ipsi	pcf	-2
Accessory olfactory bulb	ipsi	AOB	0
Olfactory bulb A16	ipsi	MOB	0
Anterior olfactory nucleus	ipsi	AON	0
Lateral septal nucleus	ipsi	LS	3
Dorsomedial tip of the lateral septal nucleus rostral part medial zone	ipsi	LSrmdmt	-0.5
Medial mammillary nucleus dorsal part	contra	MMnd	3

Input from

Name	Side	Abbr.	Weight
Caudal linear nucleus of the raphe	ipsi	CLi	0
Locus coeruleus	ipsi	LC	-0.5
Dorsal raphe nucleus	ipsi	DR	1
Dorsal raphe nucleus interfascicular part	ipsi	DRI	-0.5
Dorsal raphe nucleus ventromedial subdivision	ipsi	DRvme	2
Median raphe nucleus	ipsi	MnR	-0.5
Median raphe nucleus rostrocaudal extent	ipsi	MnRrc	2
Dorsal endopiriform nucleus	ipsi	DEn	0
Ventral endopiriform nucleus	ipsi	VEn	0
Nucleus of the horizontal limb of the diagonal band medial part	ipsi	HDBm	2
Nucleus of the vertical limb of the diagonal band caudal part	ipsi	VDBc	1.5
Nucleus of the vertical limb of the diagonal band rostromedial part	ipsi	VDBrm	3
Medial septal nucleus lateral part	ipsi	MSLa	1
Medial septal nucleus medial part	ipsi	MSm	2.5
Supramammillar nucleus	ipsi	SuM	-0.5
Rhomboid thalamic nucleus	ipsi	Rh	2
Reuniens thalamic nucleus	ipsi	Re	3
Reuniens thalamic nucleus dorsal part	ipsi	ReD	3
Ventral bank of the rhinal fissure dorsal part	ipsi	VBrfD	2.5
Ventral bank of the rhinal fissure rostral part	ipsi	VBrfR	2
Anterior basolateral nucleus	ipsi	BLA	0.5
Posterior basolateral nucleus	ipsi	BLP	0
Anterior basomedial nucleus	ipsi	BMA	0
Posterior basomedial nucleus	ipsi	BMP	0
Lateral amygdaloid nucleus	ipsi	LA	0
Ventromedial part of the lateral nucleus	ipsi	LaVM	0.5
Amygdalopiriform transition area	ipsi	APir	0
Anterior cortical amygdaloid nucleus	ipsi	ACo	0
Posterior amygdaloid nucleus	ipsi	COAp	0
Posterolateral cortical nucleus	ipsi	PLCo	0
Posteromedial cortical nucleus	ipsi	PMCo	1
Claustrum	ipsi	Cl	0
Dentate gyrus	ipsi	DG	-0.5
Field CA1 of hippocampus	ipsi	CA1	-0.5
Field CA1 of hippocampus ventral part	ipsi	CA1v	0
Field CA2 of hippocampus	ipsi	CA2	-0.5
Field CA3 of hippocampus	ipsi	CA3	3
Subiculum	ipsi	S	-0.5
Subiculum dorsal part	ipsi	Sd	2
Subiculum ventral part	ipsi	Sv	0
Fimbria fornix region	ipsi	fifo	-2
Indusium griseum	ipsi	IG	0
Presubiculum	ipsi	PrS	0
Parasubiculum	ipsi	PaS	1
Postsubiculum	ipsi	Post	0
Lateral entorhinal cortex	ipsi	LEnt	3
Lateral entorhinal cortex lateral part	ipsi	LEntLa	3
Lateral entorhinal cortex medial part	ipsi	LEntM	1
Lateral entorhinal cortex intermediate part	ipsi	LEnti	1
Medial entorhinal cortex	ipsi	MEnt	4
Medial entorhinal cortex dorsal part	ipsi	MEntD	4
Medial entorhinal cortex lateral part	ipsi	MEntL	3
Medial entorhinal field medial part	ipsi	MEntFm	0.5
Piriform cortex	ipsi	Pir	0
Postpiriform transition area	ipsi	TR	0
Retrosplenial ventral part	ipsi	RSPv	0
Retrosplenial ventral a	ipsi	RSv-a	0
Retrosplenial agranular cortex	ipsi	RSA	0
Dorsal anterior cingulate cortex	ipsi	DACC	0
Ventral anterior cingulate cortex	ipsi	VACC	0
Cingulum	ipsi	cg	-2
Prelimbic cortex	ipsi	PrL	0
Infralimbic cortex	ipsi	IL	0
Temporal cortex	ipsi	TE	0
Auditory regions	ipsi	AU	0
Primary auditory cortex	ipsi	Au1	0
Ventral auditory areas	ipsi	AUDv	0
Agranular insular cortex posterior part	ipsi	AIP	0
Granular insular cortex	ipsi	GI	0
Perirhinal cortex	ipsi	A35	2
Ectorhinal cortex	ipsi	A36	1
Postrhinal cortex	ipsi	POR	0.5
Motoric regions	ipsi	M	0
Lateral agranular prefrontal cortex	ipsi	AGl	0
Medial agranular prefrontal cortex	ipsi	AGm	0
Primary somatosensory cortex	ipsi	S1	0
Secondary somatosensory cortex	ipsi	S2	0
Primary visual cortex	ipsi	V1	0
Secondary visual cortex lateral area	ipsi	V2L	0
Primary visual cortex binocular area	ipsi	V1B	0
Laterolateral cortical visual area	ipsi	VISll	0
Anteromedial cortical visual area	ipsi	VISam	0
Ventral orbital cortex	ipsi	VO	0
Interpeduncular nucleus apical subnucleus	ipsi	IPA	0
Interpeduncular nucleus lateral subnucleus	ipsi	IPL	0
Olfactory bulb A16	ipsi	MOB	0
Field CA3 of hippocampus	contra	CA3	0

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong