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Rat connectome



Motoric regions left


Abbreviation
M
Color       
Superior regionsSomatomotoric regions

SynonymsAbbr.Language
Motoric regionsMEng
 MO 
Frontal motor cortex Eng
Frontal agranular cortex Eng
Somatomotor areas Eng
Dorsal cortical regions Eng
Frontal cortex on the dorsolateral convexity Eng
Motor cerebral cortex Eng
Frontoparietal motor region Eng
Motor areas  
Frontoparietal cortexFrPaMEng
Motor cortexCxmEng
Motoric area Eng

SubregionsSide
Lateral prefrontal cortexleft
Medial prefrontal cortexleft
Motoric regions layersleft
Transitional zone between medial and lateral agranular cortexleft
Primary motoric and primary somatosensory overlap regionleft
Dorsolateral part of the frontoparietal cortexleft
Medial agranular prefrontal cortexleft
Medial agranular cortex close to the cingulate cortexleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Central grayipsiCG1.5
Anteroposterior extension of the central gray mesencephalic partipsiCGMap2
Between anterior end of dorsal raphe and posterior ventral tegmental nucleus of the central gray mesencephalic partipsiCGMdrvtg2
Nucleus of DarkschewitschipsiDk3
Medial accessory oculomotor nucleusipsiMA33
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG0
Red nucleusipsiR3
Superior colliculusipsiSC3
Substantia nigra A9ipsiSN-0.5
Dorsal tegmental nucleusipsiDTg3
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd1
Edinger Westphal nucleusipsiEW3
Dorsolateral part of the interstitial nucleus of CajalipsiInCDL3
CulmenipsiCUL1
Caudal part of cerebellumipsiCERCca2
Deep cerebellar nucleiipsiDNC2.5
FlocculusipsiFl1
Superior cerebellar peduncleipsisucep3
PonsipsiP3
Pontine gray properipsiPGp3
Pontine nucleiipsiPn-0.5
Pontine nucleus medial partipsiBPNm0.5
Dorsomedial reticular formationipsiDMRF3
Magnocellular reticular nucleusipsiNRMC1
Medial reticular formationipsiRFm1
Ventrolateral reticular formationipsiVLRF1
Mesencephalic reticular formationipsiMRF1.5
Nucleus reticularis subcuneiformisipsiRScf3
Pontine reticular nucleusipsiPRN3
Lateral part of the central pontine reticular nucleusipsiNRTPLc3
Cuneiforme nucleusipsiCnF3
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus beta partipsiGiB3
Lateral reticular nucleusipsiLRt3
Caudal part of the lateral reticular nucleusipsiCaLRt0
Lateral reticular nucleus subtrigeminal partipsiLRtS50
Parvicellular reticular nucleusipsiPCRt3
Subcoeruleus nucleusipsiSubC2
MyelencephalonipsiMYC1
Trigeminal sensory nuclear complexipsiTSNC-0.5
Spinal trigeminal nucleusipsiSp5nc-0.5
Nucleus of the solitary tractipsiSol0
Dorsal raphe nucleus dorsal partipsiDRD1
Dorsal raphe nucleus ventral partipsiDRV1
Rostral ventrolateral medullaipsiRVLM1.5
Inferior olive dorsal nucleusipsiIOD-0.5
Inferior olive medial nucleus caudal partipsiIOMc-0.5
Inferior olive principal nucleusipsiIOPr-0.5
Dorsal paragigantocellular nucleusipsiDPGi3
Retrotrapezoid nucleusipsiRTN1
Dorsal endopiriform nucleusipsiDEn3
Ventral endopiriform nucleusipsiVEn0
Basal nucleus MeynertipsiB3
Dorsal tenia tectaipsiDTT3
Ventral tenia tectaipsiVTT0
Tuberomammillary nucleusipsiTuM0.5
Posterior region [Lateral division of the hypothalamus]ipsiPReg2
Tuberal region of lateral hypothalamusipsiTuLH2
Anterolateral regionipsiMMna2
ThalamusipsiT1
Anterodorsal thalamic nucleusipsiAD2
Anteromedial thalamic nucleusipsiAM3
Anteroventral thalamic nucleusipsiAV3
Centrolateral thalamic nucleusipsiCL-0.5
Paracentral thalamic nucleusipsiPC-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Posterior thalamic nuclear groupipsiPo3
Mediodorsal thalamic nucleusipsiMD2
Reuniens thalamic nucleusipsiRe-0.5
Ventrolateral thalamic nucleusipsiVL-0.5
Ventromedial thalamic nucleusipsiVM-0.5
Posterior groupipsiPTG-0.5
Reticular thalamic nucleusipsiRt3
Ventrolateral aspect of the the rostralmost reticular thalamic nuclear complexipsiRtmrVL-0.5
External aspect of the ventrolateral aspect of the the rostralmost reticular thalamic nuclear complexipsiRtmrVLe1
Internal lamella of the ventrolateral aspect of the the rostralmost reticular thalamic nuclear complexipsiRtmrVLi0.5
Ventral medial nucleus of the thalamusipsiVMT-0.5
Nucleus of the fields of ForelipsiF0.5
Pineal glandipsiPi2
Internal capsuleipsiic-0.5
Cerebral peduncle basal partipsicp-0.5
Corticofugal fibersipsicorcf-2
Anterior basolateral nucleusipsiBLA2
Posterior basolateral nucleusipsiBLP2
Anterior basomedial nucleusipsiBMA0
Posterior basomedial nucleusipsiBMP2
Lateral amygdaloid nucleusipsiLA0
Amygdalopiriform transition areaipsiAPir0
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp2
Posterolateral cortical nucleusipsiPLCo2
Nucleus of the lateral olfactory tractipsiLOT0
Posteromedial cortical nucleusipsiPMCo2
ClaustrumipsiCl4
Caudate putamenipsiCPu2
Medial striatumipsiCPum1
Caudal striatumipsiCPuc3
Central striatumipsiCPuce2
Dorsal striatumipsiCPud2
Dorsolateral striatumipsiCPudl2
Rostrocaudal striatumipsiCPurc2
Tail of the striatumipsiCPuTa1
Subthalamic nucleus middle partipsiSThm0
Dentate gyrusipsiDG0
Field CA1 of hippocampus dorsalipsiCA1d0
Field CA1 of hippocampus ventral partipsiCA1v0
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA30
Subiculum dorsal partipsiSd3
Subiculum ventral partipsiSv0
Indusium griseumipsiIG0
PresubiculumipsiPrS0
ParasubiculumipsiPaS1.5
PostsubiculumipsiPost1
Entorhinal cortexipsiEnt-1
Lateral entorhinal cortexipsiLEnt2
Medial entorhinal cortex dorsal partipsiMEntD2
Piriform cortexipsiPir3
Postpiriform transition areaipsiTR0
Retrosplenial dorsalipsiRSd2
Retrosplenial ventral partipsiRSPv2
Retrosplenial ventral aipsiRSv-a1
Retrosplenial area ventral part zone b/cipsiRSPv-bc0.5
Retrosplenial agranular cortexipsiRSA2
Retrosplenial granular cortexipsiRSGra-0.5
Anterior cingulate cortexipsiACC-0.5
Dorsal anterior cingulate cortexipsiDACC4
Ventral anterior cingulate cortexipsiVACC0
Middle cingulate cortexipsiMCC-0.5
Posterior cingulate cortexipsiPCC-0.5
Prelimbic cortexipsiPrL4
Infralimbic cortexipsiIL4
Lateral parietal association cortexipsiLPtA3
Medial parietal association cortexipsiMPtA1
Parietal cortex posterior areaipsiParP2
Temporal cortexipsiTE2
Ventral temporal association cortexipsiTev-1
Auditory regionsipsiAU-0.5
Primary auditory cortexipsiAu10
Ventral auditory areasipsiAUDv0
Agranular insular cortexipsiAI2
Agranular insular cortex dorsal partipsiAID3
Agranular insular cortex posterior partipsiAIP2
Agranular insular cortex ventral partipsiAIV4
Gustatory dysgranular insular cortexipsiDIg0
Granular insular cortexipsiGI0
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA362
Lateral agranular prefrontal cortexipsiAGl0
Medial agranular prefrontal cortexipsiAGm4
Sensory regionsipsiSR-0.5
Primary somatosensory cortexipsiS10
Secondary somatosensory cortexipsiS2-0.5
Primary visual cortexipsiV10
Secondary visual cortex lateral areaipsiV2L0
Primary visual cortex binocular areaipsiV1B0
Intermediolateral cortical visual areaipsiVISli1.5
Laterolateral cortical visual areaipsiVISll1.5
Mediolateral cortical visual areaipsiVISlm1.5
Posterolateral cortical visual areaipsiVISpl0
Rostrolateral cortical visual areaipsiVISrl0
Anteromedial cortical visual areaipsiVISam1
Lateral orbital cortexipsiLO3
Medial orbital cortexipsiMO0
Ventral orbital cortexipsiVO3
Ventrolateral orbital areaipsiVLO4
Nucleus of the posterior commissureipsiPCom3
Medial geniculate nucleus dorsal partipsiMGD-0.5
Accessory olfactory bulbipsiAOB0
Olfactory bulb A16ipsiMOB0
Anterior olfactory nucleusipsiAON3
Pyramidal tractipsipy-0.5
Ventral horn L4ipsiVHL41
Dorsolateral periaqueductal graycontraDLPAG0
Lateral periaqueductal graycontraLPAG0
Ventrolateral periaqueductal graycontraVLPAG0
Superior colliculuscontraSC0
CulmencontraCUL2
Caudal part of cerebellumcontraCERCca1
Dorsomedial reticular formationcontraDMRF3
Ventrolateral reticular formationcontraVLRF1
Ventromedial reticular formationcontraVMRF2
Nucleus reticularis subcuneiformiscontraRScf3
Cuneiforme nucleuscontraCnF1
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus beta partcontraGiB3
Lateral reticular nucleuscontraLRt3
Caudal part of the lateral reticular nucleuscontraCaLRt0
Caudal two third of the lateral reticular nucleuscontraCaTTLRt0
Rostromedial part of the lateral reticular nucleus magnocellular partcontraRMLRtMC1
Lateral reticular nucleus subtrigeminal partcontraLRtS50
Subcoeruleus nucleuscontraSubC2
Spinal trigeminal nucleuscontraSp5nc3
Rostral ventrolateral medullacontraRVLM1.5
Dorsal paragigantocellular nucleuscontraDPGi3
Retrotrapezoid nucleuscontraRTN0.5
Basal nucleus MeynertcontraB0
Tuberomammillary nucleuscontraTuM0.5
Posterior region [Lateral division of the hypothalamus]contraPReg0.5
Tuberal region of lateral hypothalamuscontraTuLH0.5
Anterolateral regioncontraMMna3
Nucleus of the fields of ForelcontraF0
External capsulecontraec-10
Corpus callosumcontracc-10
ClaustrumcontraCl0.5
Caudate putamencontraCPu1
Central striatumcontraCPuce1
Dorsal striatumcontraCPud1
Dorsolateral striatumcontraCPudl1
Frontal association cortex layer 5contraFrALL53
Frontal association cortex layer 6contraFrALL63
Motoric regionscontraM-0.5
Secondary somatosensory cortexcontraS2-0.5
Spinal cord layers C4contraSCLC40.5
Spinal cord layers T10contraSCLT10-0.5
Facial nerveipsi7fn3
Adrenal glandipsiADRE-0.5
Flexor digitorum muscleipsiMuscFD3
Femoral musclesipsiMuscFem-0.5
Biceps femoris muscleipsiMuscBF3
Tibialis anterior muscleipsiMuscTA3
Gastrocnemius muscleipsiMuscGC3
Posterior cricoarytenoid muscleipsiMuscPCA1
Femoral bone marrowipsiOrgSkFemM1

Input from

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL2
Substantia nigra reticular partipsiSNR0
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd2
A4 noradrenaline cellsipsiA40.5
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC2
Locus coeruleus dorsal partipsiLCD3
Locus coeruleus ventromedial partipsiVMLC0
Magnocellular reticular nucleus alpha partipsiNRMCa2
Magnocellular reticular nucleus beta partipsiNRMCb2
Nucleus reticular ventralis pars betaipsiRVb2
Nucleus reticularis ventralis pars alphaipsiRVa2
Nucleus reticularis subcuneiformisipsiRScf2
Pontine reticular nucleus oral part lateral partipsiPnOL2
Pontine reticular nucleus oral part medial partipsiPnOm2
Pontine reticular nucleus caudal part alphaipsiPnOca2
Pontine reticular nucleus caudal part betaipsiPnOcb2
Cuneiforme nucleusipsiCnF2
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus medialipsiPBnMe2
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt2
Subnucleus reticularis dorsalisipsiSRD-0.5
Medullary reticular nucleus dorsal partipsiMdDd2
Parvicellular reticular nucleusipsiPCRt0.5
Subcoeruleus nucleusipsiSubC2
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus intermediate partipsiDRim3
Dorsal raphe nucleus ventral partipsiDRV3
Dorsal raphe nucleus intermediolateral partipsiDRimL1
Linear nucleus of the rapheipsiLIR2
Median raphe nucleusipsiMnR1
Superior central raphe nucleusipsiCS2
Pontine raphe nucleusipsiPnR2
Raphe dorsalislike neurons surrounding the medial longitudinal fasciculusipsica-mlf2
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
B6 subnucleusipsiB61
B8 cell groupipsiB8CG1
Nucleus XipsiX2
Dorsal paragigantocellular nucleusipsiDPGi2
Lateral paragigantocellular nucleusipsiLPGi0.5
Caudal endopiriform regionipsiCEn-0.5
Central endopiriform systemipsiCEnN-0.5
Dorsal endopiriform nucleusipsiDEn1.5
Rostral endopiriform regionipsiREn-0.5
Ventral endopiriform nucleusipsiVEn0
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Basal nucleus MeynertipsiB-0.5
Lateral preoptic areaipsiLPO3
Dorsal tenia tectaipsiDTT3
Ventral tenia tectaipsiVTT3
Tuberomammillary nucleusipsiTuM1
Lateral hypothalamic areaipsiLH2
Transition zone of the lateral hypothalamic areaipsiLHTZ1
Lateral hypothalamus posterior partipsiLHP2
Border between lateral hypothalamus anterior part and lateral hypothalamus transitions zoneipsiLHantbTZ1
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu1
Tuberal division of the lateral hypothalamic areaipsiLHTC1
Supramammillar nucleusipsiSuM1
Supramammillar nucleus lateral partipsiSuML-0.5
Perifornical nucleusipsiPeF3
ThalamusipsiT-0.5
Anteroventral thalamic nucleusipsiAV3
Central medial thalamic nucleusipsiCM3
Centre median nucleusipsiCeMe3
Centrolateral thalamic nucleusipsiCL3
Gelatinosus thalamic nucleusipsiG4
Paracentral thalamic nucleusipsiPC4
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh-0.5
Posterior thalamic nuclear groupipsiPo3
Posterior thalamic nuclear group dorsal partipsiPoDo-0.5
Medial border of the posterior thalamic complexipsiPoMeb1
Mediodorsal thalamic nucleus lateral partipsiMDL-1
Mediodorsal thalamic nucleus medial partipsiMDM-1
Reuniens thalamic nucleusipsiRe-0.5
Ventrolateral thalamic nucleusipsiVL3
Ventral posterior thalamic complex medial partipsiVPTm3
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleusipsiVPL3
Ventromedial thalamic nucleusipsiVM2
Central ventromedial thalamic nucleusipsiCeVM-0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt4
Ventromedial thalamic nucleus dorsomedial partipsiVMDM-0.5
Ventromedial thalamic nucleus ventral partipsiVMV-0.5
Venteroposterior complex of the dorsal thalamusipsiDORvp3
Lateral posterior thalamic nucleusipsiLP3
Posteromedian thalamic nucleusipsiPoMn2
Zona incertaipsiZI3
Zona incerta rostromedial partipsiZIrm0
Internal capsuleipsiic3
Medial border Of the internal capsuleipsiicmb3
Corpus callosumipsicc-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC3
Anterior basolateral nucleusipsiBLA2.5
Posterior basolateral nucleusipsiBLP0
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP0
Lateral amygdaloid nucleusipsiLA0
Amygdalopiriform transition areaipsiAPir0
Anterior cortical amygdaloid nucleusipsiACo0
Posterior amygdaloid nucleusipsiCOAp0
Posterolateral cortical nucleusipsiPLCo2
Nucleus of the lateral olfactory tractipsiLOT0
Posteromedial cortical nucleusipsiPMCo0
ClaustrumipsiCl1.5
Anterior part of the claustrumipsiACl3
Anterodorsal part of the claustrumipsiADCl3
Anteroposterior part of the claustrumipsiClAP1.5
Central part of claustrumipsiCeCl3
Posterior part of the claustrumipsiClP1
Extrem part of the posterior part of the claustrumipsiClPep0
Ventral part of claustrumipsiVCl1
Most ventral part of claustrumipsiMVCl0
Lateral globus pallidusipsiLGP3
Ventral pallidumipsiVP3
Dorsal striatumipsiCPud3
Striatopallidal fibersipsistrpaLL-0.5
Lateral striatumipsiCPul-2
Subthalamic nucleusipsiSTh4
Parasubthalamic nucleusipsiPSTh1
Dentate gyrusipsiDG0
Field CA1 of hippocampus dorsalipsiCA1d1.5
Field CA1 of hippocampus ventral partipsiCA1v1
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA30
SubiculumipsiS3
Subiculum dorsal partipsiSd3
Subiculum ventral partipsiSv3
Indusium griseumipsiIG0
PresubiculumipsiPrS2
ParasubiculumipsiPaS2
PostsubiculumipsiPost0
Lateral entorhinal cortexipsiLEnt1
Lateral entorhinal cortex layer 4ipsiLEntL42
Medial entorhinal cortex dorsal partipsiMEntD2
Piriform cortexipsiPir0
Postpiriform transition areaipsiTR0
Retrosplenial regionsipsiRS1
Retrosplenial dorsalipsiRSd0.5
Retrosplenial ventral partipsiRSPv2
Retrosplenial ventral aipsiRSv-a0
Retrosplenial area ventral part zone b/cipsiRSPv-bc0
Retrosplenial agranular cortexipsiRSA0
Cerebral cortex layer 1ipsiCCL11
Anterior cingulate cortexipsiACC2
Dorsal anterior cingulate cortexipsiDACC2.5
Ventral anterior cingulate cortexipsiVACC2
Prelimbic cortexipsiPrL2
Infralimbic areaipsiiLA3
Infralimbic cortexipsiIL3
Frontal cortex area 2ipsiFr23
Parietal association cortexipsiPtA1
Parietal cortex posterior areaipsiParP1.5
Temporal cortexipsiTE0
Auditory regionsipsiAU0
Primary auditory cortexipsiAu10
Secondary auditory cortexipsiAu20
Ventral auditory areasipsiAUDv0
Agranular insular cortex dorsal partipsiAID0
Agranular insular cortex posterior partipsiAIP1.5
Agranular insular cortex ventral partipsiAIV2
Gustatory dysgranular insular cortexipsiDIg0
Granular insular cortexipsiGI0
Perirhinal cortexipsiA351.5
Perirhinal cortex anterior portionipsiPRha-0.5
Ectorhinal cortexipsiA362.5
Dorsal peduncular cortexipsiDP3
Lateral agranular prefrontal cortexipsiAGl0
Medial agranular prefrontal cortexipsiAGm1.5
Sensory regionsipsiSR1
Primary somatosensory cortexipsiS13
Primary somatosensory cortex barrel fieldipsiS1BF-0.5
Primary somatosensory cortex layer 6ipsiS1L6-0.5
Secondary somatosensory cortexipsiS2-0.5
Primary visual cortexipsiV10
Secondary visual cortex lateral areaipsiV2L0
Primary visual cortex binocular areaipsiV1B0
Intermediolateral cortical visual areaipsiVISli0
Laterolateral cortical visual areaipsiVISll0
Mediolateral cortical visual areaipsiVISlm0
Posterolateral cortical visual areaipsiVISpl0
Rostrolateral cortical visual areaipsiVISrl0
Anteromedial cortical visual areaipsiVISam0
Lateral orbital cortexipsiLO2
Ventral orbital cortexipsiVO3
Ventrolateral orbital areaipsiVLO2.5
Lateral geniculate complexipsiLG3
Medial geniculate nucleus medial partipsiMGM3
Accessory olfactory bulbipsiAOB0
Olfactory bulb A16ipsiMOB0
Anterior olfactory nucleusipsiAON2
Transition zone of the lateral hypothalamic areacontraLHTZ0.5
Lateral hypothalamus posterior partcontraLHP0.5
Border between lateral hypothalamus anterior part and lateral hypothalamus transitions zonecontraLHantbTZ0.5
Tuberal division of the lateral hypothalamic areacontraLHTC1
Perifornical nucleuscontraPeF1
Central medial thalamic nucleuscontraCM0
Centrolateral thalamic nucleuscontraCL0
Parafascicular thalamic nucleuscontraPF0
Posterior thalamic nuclear groupcontraPo0
Ventrolateral thalamic nucleuscontraVL0
Ventrobasal complexcontraVB0
Ventromedial thalamic nucleuscontraVM0
Posteromedian thalamic nucleuscontraPoMn0
Zona incertacontraZI1
Zona incerta rostromedial partcontraZIrm0.5
Medial border Of the internal capsulecontraicmb1
ClaustrumcontraCl1
Anterior part of the claustrumcontraACl2
Anteroposterior part of the claustrumcontraClAP1
Central part of claustrumcontraCeCl2
Posterior part of the claustrumcontraClP1
Extrem part of the posterior part of the claustrumcontraClPep0
Dorsal striatumcontraCPud3
Perirhinal cortex anterior portioncontraPRha-0.5
Motoric regionscontraM-0.5
Whiskers motor cortex layer 2contraWMCxL23
Whiskers motor cortex layer 3contraWMCxL33
Primary somatosensory cortexcontraS12
Secondary somatosensory cortexcontraS2-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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