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Rat connectome



Caudal linear nucleus of the raphe left


Abbreviation
CLi
Color       
Superior regionsDopaminergic nuclear complex

SynonymsAbbr.Language
 CCLi 
 CLI 
Caudal linear raphe  
Caudal linear raphe nucleus  
Caudal linear nucleus of the rapheCLiREng
Caudal linear nucleus of the rapheCLiEng
Caudal linear nucleus  
Nucleus linearis caudalis Eng

SubregionsSide
Caudal linear nucleus of the raphe posterior regionleft
Dorsal portion of the caudal linear nucleus of the rapheleft

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscusipsiNLL0.5
Ventral tegmental area A10ipsiVTA-0.5
Laterodorsal tegmental nucleusipsiLDTg0.5
Ventral tegmental nucleusipsiVTg-0.5
Dorsal tegmental nucleusipsiDTg0.5
Dorsal tegmental nucleus ventromedial partipsiDTgVM2
Pedunculopontine tegmental nucleusipsiPPTg0.5
Locus coeruleusipsiLC1
Pons oral partipsiPor-0.5
Medial reticular formationipsiRFm3
Laterodorsal portions of the midbrain reticular formationipsiMRFLd4
Pontine reticular nucleus central partipsiNRTPc-0.5
Lateral parabrachial nucleusipsiLPB1
Boetzinger complexipsiBo1
Dorsal raphe nucleusipsiDR1
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS-0.5
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb-0.5
Rostral ventral respiratory groupipsiRVRG1
Diagonal band of BrocaipsiDBB3
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS3
Basal nucleus MeynertipsiB2
Substantia innominataipsiSI2
Magnocellular preoptic nucleusipsiMCPO2
Medial preoptic nucleusipsiMPO0.5
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area lateral partipsiLHAL-0.5
Medial division of the hypothalamusipsiMdH-0.5
Anteroventral periventricular nucleus 2ipsiAVPV20.5
Mammillary bodyipsiCMAM-0.5
Anteroventral thalamic nucleusipsiAV0
Intralaminar nuclei of the dorsal thalamusipsiILM-0.5
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleus caudal partipsiPC-c0
Paracentral thalamic nucleus rostral partipsiPC-r0
Parafascicular thalamic nucleus lateral partipsiPFL1
Parafascicular thalamic nucleus medial partipsiPFM1
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo2
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD1
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus medial partipsiPVM0
Paraventricular thalamic nucleus posterior partipsiPVP2
Reuniens thalamic nucleusipsiRe0
Ventrolateral thalamic nucleusipsiVL2
Ventral posterior thalamic nucleus parvicellular partipsiVPPC0
Ventral posterolateral thalamic nucleusipsiVPL2
Ventral posteromedial thalamic nucleusipsiVPM2
Ventromedial thalamic nucleus caudal partipsiVMc1
Oval paracentral thalamic nucleusipsiOPC0
Reticular thalamic nucleus dorsal partipsiRtD0.5
Reticular thalamic nucleus ventral partipsiRtV0.5
Basal portion of the ventral complex of thalamic nucleiipsiBVNT-0.5
Zona incertaipsiZI-0.5
HabenulaipsiHAB-0.5
Lateral habenular nucleusipsiLHb1
Medial forebrain bundleipsimfb-2
Basal nucleusipsiBnc2
Basolateral amygdaloid nucleusipsiBL1
Anterior basolateral nucleusipsiBLA0.5
Basomedial amygdaloid nucleusipsiBM1
Dorsolateral part of the lateral nucleusipsiLaDL-0.5
Ventrolateral part of the lateral nucleusipsiLaVL-0.5
Ventromedial part of the lateral nucleusipsiLaVM-0.5
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD2
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL2
Bed nucleus of the stria terminalis medial division posterointermediate partipsiBSTMPI-0.5
Central amygdaloid nucleusipsiCe2
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC1
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Sublenticular extended amygdalaipsiSLEA2
Medial division of the sublenticular extended amygdalaipsiSLEAm-1
Medial amygdaloid nucleusipsiMe-0.5
Globus pallidusipsiGP0.5
Ventral pallidumipsiVP1
Accumbens nucleusipsiAc3
Accumbens nucleus anteromedial partipsiAcAM2
Accumbens nucleus coreipsiAcbC1
Accumbens nucleus shellipsiAcbSh1
Lateral accumbens shellipsiAcbShl1
Medial accumbens shellipsiAcbShm3
Lateral nucleus accumbensipsiAcl1
Medial accumbensipsiAcbM1
Dorsal striatumipsiCPud0.5
HippocampusipsiHIPP-0.5
Dorsal hippocampusipsiHIPPd0
Field CA1 of hippocampus dorsalipsiCA1d0
Glia limitans layeripsigliaLim3
Cingulate cortexipsiCg1
Anterior cingulate cortexipsiACC1
Cingulate cortex area 1ipsiCg12
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL2
Agranular insular cortex dorsal part deep layersipsiAIDdL-0.5
Agranular insular cortex dorsal part superficial layersipsiAIDsL3
Dysgranular insular cortexipsiDI0
Granular insular cortexipsiGI0
Prefrontal cortexipsiPFC3
Lateral agranular prefrontal cortexipsiAGl3
Forelimb motor cortexipsiFMCx1
Medial prefrontal cortexipsimPFC3
Medial agranular prefrontal cortexipsiAGm2
Anterior medial frontal cortexipsiAMFC1
Lateral orbital cortexipsiLO-0.5
Medial orbital cortexipsiMO2
Ventrolateral orbital areaipsiVLO3
Ventrolateral orbital area posterior partipsiVLOp1
Olfactory tubercle lateral partipsiTuOL1
Olfactory tubercle medial partipsiTuOMP3
Lateral septal nucleusipsiLS1
Supraependymal terminals of 3d ventricleipsiset3V3
Subependymal terminals under the ependyma of the 3d ventricleipsisete3V3
4th ventricleipsi4V3
AqueductipsiAq3
Nuclei of the lateral lemniscuscontraNLL0.5
Laterodorsal tegmental nucleuscontraLDTg0.5
Dorsal tegmental nucleuscontraDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg0.5
Locus coeruleuscontraLC0.5
Lateral parabrachial nucleuscontraLPB0.5
Median raphe nucleuscontraMnR2
Rostral ventral respiratory groupcontraRVRG1
Medial preoptic nucleuscontraMPO0.5
Anteroventral periventricular nucleus 2contraAVPV20.5
Cingulate cortexcontraCg0.5
Anterior cingulate cortexcontraACC1
Prelimbic cortexcontraPrL0.5
Infralimbic cortexcontraIL1
Medial agranular prefrontal cortexcontraAGm1
Medial orbital cortexcontraMO0.5
Pterygopalatine ganglionipsiAutoPpG-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Oculomotor systemipsiOCS1
Red nucleusipsiR0
Superior colliculusipsiSC1
Substantia nigra A9ipsiSN1
Ventral tegmental area A10ipsiVTA1
Ventral tegmental area A10 caudal partipsiVTAcp2.5
Ventral tegmental area A10 caudoventromedialipsiVTACVM2.5
Edinger Westphal nucleusipsiEW1.5
Central cerbellar nucleiipsiCERcn0
Interposed cerebellar nucleiipsiICN1
Lateral cerebellar nucleusipsiCERL2
Medial cerebellar nucleusipsiMed0
Locus coeruleusipsiLC0
Nucleus incertus pars compactaipsiNIc2
Nucleus incertus pars dissipataipsiNId3
Medial reticular formationipsiRFm-0.5
Pontine reticular nucleusipsiPRN1
Parabrachial nucleusipsiPB2
Principal sensory trigeminal nucleusipsiPr50
Vestibular nucleiipsiVnc0
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus lateral wingipsiDRlw3
Rostral linear nucleus of the rapheipsiRLi0
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS-0.5
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg0
Cuneate nucleusipsiCu1
Diagonal band of BrocaipsiDBB2
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA2
Magnocellular preoptic nucleusipsiMCPO0
Ventrolateral preoptic nucleusipsiVLPO2
Dorsolateral preoptic regionipsiPREOdL2
Dorsal regionipsiDHR1
Lateral hypothalamic areaipsiLH2
Reticular lateral areaipsiRLA0
Anterior hypothalamic areaipsiAHA2
Posterior hypothalamic areaipsiPHA0
Paraventricular hypothalamic nucleusipsiPa1
Supraoptic nucleus [Supraoptic region]ipsiSO2
Incerto hypothalamic areaipsiicHYPO1
Supramammillar nucleusipsiSuM1
Zona incertaipsiZI1
Forel field H1ipsiFFH10
Forel field H2ipsiFFH20
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb0
Amygdaloid complexipsiAC0
Anterior basomedial nucleusipsiBMA-0.5
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm1
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc1
Central amygdaloid nucleus lateral divisionipsiCeL1.5
Central amygdaloid nucleus medial division rostral partipsiCeMR1.5
Accumbens nucleusipsiAc1
Accumbens nucleus caudomedial shellipsiAcbShcm3
Cingulate cortexipsiCg0
Parietal association cortexipsiPtA0
Suprarhinal regionipsiSRR1
Prefrontal cortexipsiPFC1
Olfactory tubercleipsiTuO0
Lateral cerebellar nucleuscontraCERL-0.5
Nucleus incertus pars dissipatacontraNId2
Lateral habenular nucleuscontraLHb-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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