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Rat connectome



Secondary somatosensory cortex layer 5 left


Abbreviation
S2L5
Color       
Superior regionsInfragranular layers of secondary somatosensory cortex

SynonymsAbbr.Language
Secondary somatosensory cortex layer 5S2L5 
Infragranular layer of somatosensory cortex Eng

SubregionsSide
Secondary somatosensory cortex layer 5aleft
Secondary somatosensory cortex layer 5bleft

Output to

NameSideAbbr.WeightDetails
TectumipsiTEC-0.5
Tegmental areaipsiTGA1
Substantia nigra A9ipsiSN-0.5
Reticulotegmental nucleusipsiRETn1
Pontine nucleiipsiPn2
Deep mesencephalic nucleusipsiDpMe-0.5
MyelencephalonipsiMYC4
Principal sensory trigeminal nucleusipsiPr53
Spinal trigeminal nucleus caudal partipsiSp5C3
Arcuate nucleusipsiArc-0.5
ThalamusipsiT2
Dorsal thalamusipsiDOR-0.5
Anterior group of the dorsal thalamusipsiATN3
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group dorsal partipsiPoDo2.5
Ventrolateral thalamic nucleusipsiVL3
Ventrobasal complexipsiVB3
Arcuate nuclei of ventrobasal complexipsiAVB2
External nucleus of ventrobasal complexipsiEVB2
Dorsomedial zone of the ventral posterolateral thalamic nucleusipsiVPLdmz-0.5
Ventral part of the ventral posteromedial thalamic nucleusipsiVPMvL0
Ventrobasal complex posterior partipsiVBp3
Intralaminar nucleiipsiILN-0.5
Lateral posterior thalamic nucleusipsiLP3
Posterior groupipsiPTG-0.5
Reticular thalamic nucleusipsiRt-0.5
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI-0.5
Cerebral peduncle basal partipsicp-2
Corpus callosumipsicc-2
Caudate putamenipsiCPu4
Dorsolateral striatum dorsal partipsiCPudlD1
Dorsolateral striatum ventral partipsiCPudlV3
Frontal cortex area 2ipsiFr2-0.5
Dysgranular insular cortexipsiDI3
Lateral agranular prefrontal cortexipsiAGl3
Forelimb motor cortexipsiFMCx3
Medial prefrontal cortex layer 5ipsimPFCL53
Medial prefrontal cortex layer 6ipsimPFCL63
Medial prefrontal cortex layer 3ipsimPFCL33
Medial prefrontal cortex layer 4ipsimPFCL43
Primary somatosensory cortexipsiS13
Primary somatosensory cortex barrel fieldipsiS1BF3
Primary somatosensory cortex face regionipsiS1FR3
Primary somatosensory cortex upper jaw regionipsiS1uJ3
Primary somatosensory cortex lower lip regionipsiS1LL3
Primary somatosensory cortex upper lip regionipsiS1ULp3
Primary somatosensory cortex forelimb regionipsiS1FL2
Primary somatosensory cortex forelimb region forepawipsiS1FP3
Primary somatosensory cortex forelimb digit regionipsiS1FLd1.5
Primary somatosensory cortex proximal forelimb regionipsiS1FLP2
Primary somatosensory cortex hindlimb regionipsiS1HL1
Primary somatosensory cortex proximal leg regionipsiS1HLpLe2
Primary somatosensory cortex distal hindlimb regionipsiS1HLD3
Primary somatosensory cortex proximal hindlimb regionipsiS1HLP3
Primary somatosensory cortex lower trunk regionipsiS1LTr2
Lateral geniculate complexipsiLG3
Medial geniculate nucleusipsiMG3
Pyramidal tractipsipy1
Cervical segment 1ipsiCS11
Cervical segment 2ipsiCS21
Cervical segment 5ipsiCS52
Cervical segment 6ipsiCS62
Pontine nucleicontraPn0.5
Subnucleus reticularis dorsaliscontraSRD3
Principal sensory trigeminal nucleus frontal nerve regioncontraPr5F3
Principal sensory trigeminal nucleus lingual partcontraPr5L3
Lateral part of the infraorbital part of the principal sensory trigeminal nucleus maxillary partcontraPr5MiL3
Medial part of the infraorbital part of the principal sensory trigeminal nucleus maxillary partcontraPr5MiM3
Principal sensory trigeminal nucleus mental partcontraPr5Me3
Corpus callosumcontracc-2
Dorsolateral striatum dorsal partcontraCPudlD0.5
Dorsolateral striatum ventral partcontraCPudlV1
Medial prefrontal cortex layer 5contramPFCL51.5
Medial prefrontal cortex layer 6contramPFCL61.5
Medial prefrontal cortex layer 3contramPFCL31.5
Medial prefrontal cortex layer 4contramPFCL41.5
Primary somatosensory cortexcontraS13
Primary somatosensory cortex upper jaw regioncontraS1uJ-0.5
Primary somatosensory cortex periangular zone arround barrel fieldscontraS1pg3
Secondary somatosensory cortexcontraS23
Cervical segment 1contraCS11
Cervical segment 2contraCS23
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 3 C4contraSCL3C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 1 C4contraSCL1C4-0.5
Spinal cord layer 2 C4contraSCL2C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 3 C5contraSCL3C5-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Spinal cord layer 1 C5contraSCL1C5-0.5
Spinal cord layer 2 C5contraSCL2C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layers C6contraSCLC63
Spinal cord layers C7contraSCLC73
Spinal cord layers C8contraSCLC83
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 3 L3contraSCL3L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 2 L3contraSCL2L3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 3 L4contraSCL3L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 2 L4contraSCL2L4-0.5
Spinal cord layer 7 L4contraSCL7L4-0.5
Sublingual glandipsiOrgSubLGL-0.5
Submandibular glandipsiOrgsSubg1
Sublingual glandcontraOrgSubLGL1
Submandibular glandcontraOrgsSubg1

Input from

NameSideAbbr.WeightDetails
Gigantocellular reticular nucleusipsiGi1
Rhomboid thalamic nucleusipsiRh2
Ventral posteromedial thalamic nucleusipsiVPM1
Frontal cortex area 2ipsiFr2-0.5
Border of frontal cortex 2ipsiFr2B3
Granular insular cortex posterior partipsiGIpo0.5
Primary somatosensory cortexipsiS1-0.5
Primary somatosensory cortex barrel fieldipsiS1BF3
Primary somatosensory cortex face regionipsiS1FR3
Primary somatosensory cortex upper jaw regionipsiS1uJ3
Primary somatosensory cortex lower lip regionipsiS1LL3
Primary somatosensory cortex upper lip regionipsiS1ULp3
Primary somatosensory cortex forelimb regionipsiS1FL2
Primary somatosensory cortex forelimb region forepawipsiS1FP2
Primary somatosensory cortex forelimb digit regionipsiS1FLd1.5
Primary somatosensory cortex proximal forelimb regionipsiS1FLP2
Primary somatosensory cortex hindlimb regionipsiS1HL1
Primary somatosensory cortex proximal leg regionipsiS1HLpLe2
Primary somatosensory cortex distal hindlimb regionipsiS1HLD3
Primary somatosensory cortex proximal hindlimb regionipsiS1HLP3
Primary somatosensory cortex lower trunk regionipsiS1LTr2
Secondary somatosensory cortex layer 3ipsiS2L3-0.5
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Anterior portion of the anterolateral part of the lateral extrastriate cortexipsiVISLaLA3
Lateromedial part of the lateral extrastriate cortexipsiVISLLM1
Anterior part of the medial extrastriate cortexipsiVISMA1.5
Border of frontal cortex 2contraFr2B3
Primary somatosensory cortexcontraS13
Primary somatosensory cortex upper jaw regioncontraS1uJ-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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