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Rat connectome



Primary somatosensory cortex hindlimb region left


Abbreviation
S1HL
Color       
Superior regionsPrimary somatosensory cortex nonorofascial part

SynonymsAbbr.Language
Primary somatosensory cortex hindlimb regionS1HLEng
 HL 
Primary somatosensory cortex lower limbSSp-llEng
Hindlimb primary sensorimotor cortex Eng

SubregionsSide
Primary somatosensory cortex hindlimb region anterior partleft
Primary somatosensory cortex hindlimb region lateral partleft
Primary somatosensory cortex hindlimb region medial partleft
Primary somatosensory cortex hindlimb region middle partleft
Primary somatosensory cortex hindpaws regionleft
Primary somatosensory cortex hindlimb region layersleft
Primary somatosensory cortex hindlimb leg regionleft
Primary somatosensory cortex hindlimb toe regionleft
Primary somatosensory cortex distal hindlimb regionleft
Primary somatosensory cortex proximal hindlimb regionleft
Upper portion of the primary somatosensory cortex hindlimb regionleft
Primary somatosensory cortex hindlimb stump representationleft
Primary somatosensory cortex hindlimb region caudal partleft
Primary somatosensory cortex hindlimb region rostral partleft
Primary somatosensory cortex hindlimb region posterior partleft
Hindpaw barrel subfieldleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG1.5
Medial pontine nucleusipsiMPoN1
Red nucleusipsiR-0.5
Red nucleus magnocellular part rostral sectoripsiRMCro-0.5
Red nucleus parvicellular partipsiROC-0.5
Optic nerve layer of the superior colliculusipsiOp0
Superficial gray layer of the superior colliculusipsiSuG0
Superior colliculus zonal layeripsiSCzo0
Intermediate gray layer of the superior colliculusipsiInG1
Intermediate gray layer of the posterolateral superior colliculusipsiInGPL1.5
Deep gray layer of the superior colliculusipsiDpG-0.5
Deep gray layer of the extreme posterolateral superior colliculusipsiDpePLG0.5
Superior colliculus medial partipsimSC1
Superior colliculus medial boundaryipsimbSC0
Tegmental areaipsiTGA-2
Dorsal peduncular pontine nucleusipsiDPPn-0.5
Peripeduncular nucleus ventral partipsiPPv-0.5
Rostralmost ventral peripeduncular nucleusipsiPPvrm-0.5
CulmenipsiCUL1
Caudal part of cerebellumipsiCERCca2
Deep cerebellar nucleiipsiDNC2.5
FlocculusipsiFl1
PonsipsiP2
Barringtons nucleusipsiBar0.5
Lateral pontine nucleusipsiLPn3
Locus coeruleusipsiLC0.5
Midline region of the pontine grayipsiMiPG1
Pontine gray caudal partipsiPGCa3
Ventral aspect of caudal pontine grayipsiPGCaVe3
Pontine gray rostral partipsiPGro3
Pontine nucleiipsiPn-0.5
Pontine nuclei caudal partipsiBPNc-0.5
Caudal pole region of the pontine nucleiipsiBPNcP-0.5
Pontine nuclei lateral partipsiBPNL-0.5
Pontine nuclei medial lateral zonesipsiPnML3
Most rostral level of the pontine nucleiipsiMroLBPNr1
Pontine nucleus medial partipsiBPNm-0.5
Pontine nucleus ventral partipsiBPNv3
Pontine reticular nucleusipsiPRN1.5
Mesencephalic trigeminal nucleusipsiMe50.5
Mesencephalic trigeminal nucleus medial partipsiperiMe50.5
Spinal vestibular nucleus rostral partipsiSpVeR-1
Midline raphe nucleiipsiMRAN1
Dorsal aspect of the rostral medial accessory olive at mid olivary levelipsiIODLmoL3
Inferior olive subnucleus A of medial nucleusipsiIOA2
Inferior olive medial nucleus caudolateral partipsiIOMcL1.5
Inferior olive principal nucleus ventral leafipsiIOPrvl1.5
Centrolateral thalamic nucleusipsiCL-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Posterior thalamic nuclear groupipsiPo-0.5
Lateral part of the medial part of posterior thalamic nuclear groupipsiPoML-0.5
Posterior thalamic nuclear group dorsal partipsiPoDo-0.5
Ventro anterior thalamic nucleusipsiVA1
Ventrolateral thalamic nucleusipsiVL2
Ventral posterior thalamic complex lateral partipsiVPTL3
Ventral posterior thalamic complex medial partipsiVPTm3
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleusipsiVPL3
Ventrobasal complex lateral partipsiVBL-0.5
Intralaminar nucleiipsiILN-0.5
Medial laterodorsal thalamic nucleus rostromedial laterodorsal thalamic nucleus transition regionipsiLDmLDmrt1
Reticular thalamic nucleusipsiRt-0.5
Reticular thalamic nucleus dorsal partipsiRtD1
Lateral part of the reticular thalamic nucleus external partipsiRtexL3
Anterior pretectal nucleusipsiAPT-0.5
Cerebral peduncle basal partipsicp-2
Lateral part of crus cerebriipsicpL-2
StriatumipsiSTR-0.5
Caudate putamenipsiCPu3
Dorsomedial striatumipsiCPudm2
Dorsomedial striatum rostral partipsiCPudmr2
Medial striatumipsiCPum2
Central striatumipsiCPuce2
Dorsocentral striatumipsiDCS1
Dorsolateral striatumipsiCPudl2
Dorsolateral striatum dorsal partipsiCPudlD3
Rostral striatum dorsolateral partipsiCPurDL-0.5
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA-0.5
Parietal cortex ventral area layer 5ipsiParVL51.5
Parietal cortex ventral area layer 6ipsiParVL61.5
Parietal cortex ventral area layer 4ipsiParVL41
Parietal cortex ventral area layer 1ipsiParVL10.5
Parietal cortex ventral area layer 2ipsiParVL20.5
Parietal cortex ventral area layer 3ipsiParVL31
Lateral agranular prefrontal cortexipsiAGl-0.5
Elbow flexion motor cortexipsiEFMCx1
Ankle dorsiflexion motor cortexipsiADFMCx3
Ankle plantar flexion motor cortexipsiAPFMCx3
Hindlimb motor cortex caudal partipsiHMCxC3
Hip flexion motor cortexipsiHFMCx2
Rostral whisker motor areaipsiRWMA-0.5
Medial prefrontal cortex layer 5ipsimPFCL53
Medial prefrontal cortex layer 6ipsimPFCL63
Medial prefrontal cortex layer 3ipsimPFCL33
Medial prefrontal cortex layer 4ipsimPFCL43
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortex medial intercalated zoneipsiS1iZm-0.5
Primary somatosensory cortex forelimb regionipsiS1FL1
Primary somatosensory cortex forelimb stump representationipsiS1FLS0.5
Leg region of the primary somatosensory cortex layer 1ipsiS1FLeL13
Leg region of the primary somatosensory cortex layer 2ipsiS1FLeL23
Leg region of the primary somatosensory cortex layer 3ipsiS1FLeL33
Leg region of the primary somatosensory cortex layer 4ipsiS1FLeL42.5
Leg region of the primary somatosensory cortex layer 5ipsiS1FLeL52.5
Leg region of the primary somatosensory cortex layer 6ipsiS1FLeL62.5
Primary somatosensory cortex hindlimb regionipsiS1HL3
Secondary somatosensory cortexipsiS22
Secondary somatosensory cortex layer 1ipsiS2L10.5
Secondary somatosensory cortex layer 2ipsiS2L20.5
Secondary somatosensory cortex layer 3ipsiS2L30.5
Secondary somatosensory cortex layer 4ipsiS2L40.5
Secondary somatosensory cortex layer 5ipsiS2L51
Secondary somatosensory cortex layer 6ipsiS2L61
Medial dysgranular cortexipsiMdyC3
Orbital cortexipsiOrC-0.5
Commissural systemsipsicos0.5
Dorsal geniculate nucleus lateral partipsiDLGl0
Ventral horn of spinal cordipsiVHMES-0.5
Intermediate gray layer of the superior colliculuscontraInG0
Superior colliculus medial partcontramSC0
CulmencontraCUL2
Caudal part of cerebellumcontraCERCca1
Ventral region of the ventral part of the pontine nucleuscontraVBPNv-0.5
Spinal vestibular nucleus rostral partcontraSpVeR1.5
Cuneate nucleuscontraCu-0.5
GracilecontraGra-0.5
Inferior olive dorsal nucleuscontraIOD1
Inferior olive principal nucleus ventral leafcontraIOPrvl1
Ventrolateral thalamic nucleuscontraVL2
Ventrobasal complexcontraVB2
StriatumcontraSTR2
Dorsomedial striatumcontraCPudm1
Dorsomedial striatum rostral partcontraCPudmr1
Medial striatumcontraCPum1
Dorsolateral striatumcontraCPudl2
Dorsolateral striatum dorsal partcontraCPudlD2
Frontal cortex area 1contraFr12
Medial prefrontal cortex layer 5contramPFCL51.5
Medial prefrontal cortex layer 6contramPFCL61.5
Medial prefrontal cortex layer 3contramPFCL31.5
Medial prefrontal cortex layer 4contramPFCL41.5
Primary somatosensory cortex forelimb regioncontraS1FL2
Primary somatosensory cortex hindlimb regioncontraS1HL2
Secondary somatosensory cortexcontraS22
Lumbar segmentscontraLSeg-0.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Ventral horn of spinal cordcontraVHMES3

Input from

NameSideAbbr.WeightDetails
Basal nucleus MeynertipsiB-3
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Posterior thalamic nuclear groupipsiPo3
Mediodorsal part of posterior thalamic nuclear groupipsiPomd2
Posterior thalamic nuclear group dorsal partipsiPoDo3
Ventral anterior-lateral complex of the thalamusipsiVAL3
Ventro anterior thalamic nucleusipsiVA2
Ventrolateral thalamic nucleusipsiVL3
Ventrobasal complexipsiVB3
Ventral posterolateral thalamic nucleusipsiVPL3
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Laterodorsal thalamic nucleus ventrolateral part medial regionipsiLDVLm1
Reticular thalamic nucleus dorsal partipsiRtD3
Frontal cortex area 1ipsiFr1-1
Frontal cortex area 2ipsiFr2-1
Parietal cortex posterior areaipsiParP-1
Parietal cortex area 1ipsiPar12
Parietal cortex area 2ipsiPar22.5
Parietal cortex ventral area layer 5ipsiParVL51.5
Parietal cortex ventral area layer 6ipsiParVL61.5
Parietal cortex ventral area layer 4ipsiParVL41
Parietal cortex ventral area layer 1ipsiParVL10.5
Parietal cortex ventral area layer 2ipsiParVL20.5
Parietal cortex ventral area layer 3ipsiParVL31
Agranular insular cortexipsiAI2
Perirhinal cortexipsiA352
Primary somatosensory cortex medial intercalated zoneipsiS1iZm-0.5
Primary somatosensory cortex forelimb regionipsiS1FL0
Primary somatosensory cortex hindlimb regionipsiS1HL3
Primary somatosensory cortex hindlimb leg region layer 2ipsiS1HLLeL23
Primary somatosensory cortex hindlimb leg region layer 3ipsiS1HLLeL33
Primary somatosensory cortex hindlimb leg region layer 4ipsiS1HLLeL42
Primary somatosensory cortex hindlimb leg region layer 5ipsiS1HLLeL51.5
Primary somatosensory cortex hindlimb leg region layer 6ipsiS1HLLeL61.5
Secondary somatosensory cortex caudal partipsiS2C-0.5
Secondary somatosensory cortex layer 1ipsiS2L10.5
Secondary somatosensory cortex layer 2ipsiS2L20.5
Secondary somatosensory cortex layer 3ipsiS2L30.5
Secondary somatosensory cortex layer 4ipsiS2L40.5
Secondary somatosensory cortex layer 5ipsiS2L51
Secondary somatosensory cortex layer 6ipsiS2L61
Medial geniculate nucleusipsiMG-1
Frontal cortex area 1contraFr12
Frontal cortex area 2contraFr22
Frontal cortex area 3contraFr32
Primary somatosensory cortexcontraS10
Primary somatosensory cortex forelimb regioncontraS1FL2
Primary somatosensory cortex hindlimb regioncontraS1HL2
Lumbar segment 1contraL13
Lumbar segment 2contraL23
Lumbar segment 3contraL33

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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