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Rat connectome



Subparafascicular thalamic nucleus rostral part left


Abbreviation
SPFr
Color       
Superior regionsSubparafascicular thalamic nucleus

SynonymsAbbr.Language
Subparafascicular thalamic nucleus rostral partSPFr 
Rostral part subparafascicular thalamic nucleus  
Rostral part of the subparafascicular thalamic nucleus Eng

Output to

NameSideAbbr.WeightDetails
Peripeduncular areaipsiPPA1
Median eminenceipsiME0
Endopiriform systemipsiEnN1
Diagonal band of BrocaipsiDBB2
Medial septal nucleusipsiMS1
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA1
Tenia tectaipsiTT2
Tuberomammillary nucleusipsiTuM2
Vascular organ of the lamina terminalisipsiVOLT0
Lateral hypothalamic areaipsiLH2
Anterior hypothalamic areaipsiAHA2
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc1
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH1
Arcuate nucleusipsiArc1
Periparaventricular area of hypothalamusipsiPPVA2
Paraventricular hypothalamic nucleusipsiPa1
Periventricular hypothalamic nucleusipsiPe1
Suprachiasmatic nucleusipsiSCh0
Supraoptic nucleus [Supraoptic region]ipsiSO1
Medial mammillary nucleusipsiMMn0
Medial mammillary nucleus lateral partipsiML1
Premammillary nucleus dorsal partipsiPMD1
Premammillary nucleus ventral partipsiPMV1
Supramammillar nucleusipsiSuM1
Perifornical nucleusipsiPeF2
Retrochiasmatic areaipsiRCh1
Anterodorsal thalamic nucleusipsiAD0
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM0
Parafascicular thalamic nucleusipsiPF1
Posterior thalamic nuclear groupipsiPo1
Suprageniculate thalamic nucleusipsiSG1
Mediodorsal thalamic nucleusipsiMD1
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV1
Reuniens thalamic nucleusipsiRe3
Posterior intralaminar thalamic nucleusipsiPIL2
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD1
Ventral thalamusipsiVNT1
Reticular thalamic nucleusipsiRt1
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus parvicellular partipsiSPFp2
Nucleus of the fields of ForelipsiF2
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb0
Basolateral amygdaloid nucleusipsiBL0
Basomedial amygdaloid nucleusipsiBM2
Lateral amygdaloid nucleusipsiLA1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus lateral division dorsal partipsiCeLd2
Central amygdaloid nucleus medial divisionipsiCeM2
Amygdalopiriform transition areaipsiAPir0
Anterior amygdaloid areaipsiAA0
Cortical amygdaloid nucleusipsiCAn1
Anterior cortical amygdaloid nucleusipsiACo-0.5
Medial amygdaloid nucleusipsiMe2
Amygdalohippocampal areaipsiAHi0
Amygdalostriatal transition areaipsiAStr2
ClaustrumipsiCl1
Globus pallidusipsiGP1
Ventral pallidumipsiVP1
Accumbens nucleus coreipsiAcbC0
Accumbens nucleus shellipsiAcbSh1
Caudate putamenipsiCPu0
Caudate putamen caudolateral partipsiCPucl2
Caudolateralmost part of the caudate putamenipsiCPuCLm1
Ventromedial striatumipsiCPuvm0
Fundus of the striatumipsiFS2
Subthalamic nucleusipsiSTh1
Dentate gyrusipsiDG0
Field CA1 of hippocampusipsiCA10
Field CA3 of hippocampusipsiCA30
SubiculumipsiS0
ParasubiculumipsiPaS1
Entorhinal cortexipsiEnt1
Cingulate cortexipsiCg1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA1
Frontal association cortex layer 1ipsiFrALL13
Auditory regionsipsiAU0
Auditory regions layer 1ipsiAUL11
Insular cortexipsiICX2
Insular cortex layer 1ipsiICXL13
Perirhinal cortexipsiA352
Perirhinal cortex layer 1ipsiA35L12
Ectorhinal cortexipsiA362
Ectorhinal cortex layer 1ipsiA36L12
Dorsal peduncular cortexipsiDP2
Somatomotoric regionsipsiSMR0
Sensory regionsipsiSR1
Visual regionsipsiVR0
Orbital cortexipsiOrC1
Orbital cortex layer 1ipsiOrCL12
Lateral geniculate complexipsiLG1
Medial geniculate nucleus medial partipsiMGM1
Medial geniculate nucleus ventral partipsiMGV1
Olfactory bulb A16ipsiMOB0
Anterior olfactory nucleusipsiAON0
Olfactory tubercleipsiTuO1
Lateral septal nucleus caudal part ventral zoneipsiLScv2
Lateral septal nucleus dorsal partipsiLSD0
Lateral septal nucleus intermediate partipsiLSI2
Lateral septal nucleus ventral partipsiLSV1
Spinal cord layers C1ipsiSCLC12.5
Spinal cord layers C2ipsiSCLC22.5
Spinal cord layers C3ipsiSCLC32.5
Spinal cord layers C4ipsiSCLC42.5
Spinal cord layers C5ipsiSCLC52.5
Spinal cord layers C6ipsiSCLC62.5
Spinal cord layers C7ipsiSCLC72.5
Spinal cord layers C8ipsiSCLC82.5

Input from

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscusipsiNLL1
Medial paralemniscal nucleusipsiMPL2
Dorsolateral periaqueductal grayipsiDLPAG2
Dorsomedial periaqueductal grayipsiDMPAG2
Lateral periaqueductal grayipsiLPAG2
Ventrolateral periaqueductal grayipsiVLPAG2
Dorsal cortex of the inferior colliculusipsiDCIC1
Superior colliculus deep layersipsiSCd1
Ventral tegmental area A10ipsiVTA1
Peripeduncular areaipsiPPA2
Pedunculopontine tegmental nucleusipsiPPTg1
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Pontine reticular nucleusipsiPRN1
Cuneiforme nucleusipsiCnF2
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus medialipsiPBnMe2
Subcoeruleus nucleusipsiSubC1
Dorsal raphe nucleusipsiDR1
Periolivary areaipsiPOA1
Diagonal band of BrocaipsiDBB1
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA1
Tenia tectaipsiTT1
Lateral hypothalamic areaipsiLH2
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe2
Anterior hypothalamic nucleusipsiAHn2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic nucleusipsiPH2
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleusipsiPa1
Suprachiasmatic nucleusipsiSCh1
Premammillary nucleus dorsal partipsiPMD2
Perifornical nucleusipsiPeF2
Retrochiasmatic areaipsiRCh1
Subbrachial nucleusipsiSubB1
Suprageniculate thalamic nucleusipsiSG1
Paraventricular thalamic nucleusipsiPV1
Posterior intralaminar thalamic nucleusipsiPIL2
Lateral posterior thalamic nucleusipsiLP1
Subparafascicular thalamic nucleus parvicellular partipsiSPFp2
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF2
Lateral habenular nucleusipsiLHb1
Pretectal regionipsiPRT1
Anterior pretectal nucleusipsiAPT1
Basolateral amygdaloid nucleusipsiBL1
Basomedial amygdaloid nucleusipsiBM1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe1
Anterior amygdaloid areaipsiAA2
Cortical amygdaloid nucleusipsiCAn1
Medial amygdaloid nucleusipsiMe2
ClaustrumipsiCl2
Ventral pallidumipsiVP1
Subthalamic nucleusipsiSTh1
SubiculumipsiS3
Retrosplenial agranular cortexipsiRSA1
Cingulate cortexipsiCg3
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL3
Frontal association cortexipsiFrA1
Insular cortexipsiICX3
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA362
Dorsal peduncular cortexipsiDP2
Somatomotoric regionsipsiSMR1
Nucleus of the posterior commissureipsiPCom1
Olfactory-limbic-transitional zoneipsiOFLT2
Lateral septal nucleus intermediate partipsiLSI3
Lateral septal nucleus ventral partipsiLSV1
Nuclei of the lateral lemniscuscontraNLL0.5
Medial paralemniscal nucleuscontraMPL0.5
Dorsolateral periaqueductal graycontraDLPAG0.5
Dorsomedial periaqueductal graycontraDMPAG0.5
Lateral periaqueductal graycontraLPAG0.5
Ventrolateral periaqueductal graycontraVLPAG0.5
Dorsal cortex of the inferior colliculuscontraDCIC0.5
Superior colliculus deep layerscontraSCd0.5
Ventral tegmental area A10contraVTA0.5
Peripeduncular areacontraPPA0.5
Pedunculopontine tegmental nucleuscontraPPTg0.5
Barringtons nucleuscontraBar0.5
Locus coeruleuscontraLC0.5
Pontine reticular nucleuscontraPRN0.5
Cuneiforme nucleuscontraCnF0.5
Koelliker Fuse nucleuscontraKF0.5
Lateral parabrachial nucleuscontraLPB0.5
Parabrachial nucleus medialcontraPBnMe0.5
Subcoeruleus nucleuscontraSubC0.5
Dorsal raphe nucleuscontraDR0.5
Periolivary areacontraPOA0.5
Diagonal band of BrocacontraDBB0.5
Substantia innominatacontraSI0.5
Lateral preoptic areacontraLPO0.5
Medial preoptic areacontraMPA0.5
Tenia tectacontraTT0.5
Lateral hypothalamic areacontraLH0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0.5
Anterior hypothalamic nucleuscontraAHn0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0.5
Posterior hypothalamic nucleuscontraPH0.5
Ventromedial hypothalamic nucleuscontraVMH0.5
Arcuate nucleuscontraArc0.5
Paraventricular hypothalamic nucleuscontraPa0.5
Suprachiasmatic nucleuscontraSCh0.5
Premammillary nucleus dorsal partcontraPMD0.5
Perifornical nucleuscontraPeF0.5
Retrochiasmatic areacontraRCh0.5
Subbrachial nucleuscontraSubB0.5
Suprageniculate thalamic nucleuscontraSG0.5
Paraventricular thalamic nucleuscontraPV0.5
Posterior intralaminar thalamic nucleuscontraPIL0.5
Lateral posterior thalamic nucleuscontraLP0.5
Subparafascicular thalamic nucleus parvicellular partcontraSPFp0.5
Zona incertacontraZI0.5
Nucleus of the fields of ForelcontraF0.5
Lateral habenular nucleuscontraLHb0.5
Pretectal regioncontraPRT0.5
Anterior pretectal nucleuscontraAPT0.5
Basolateral amygdaloid nucleuscontraBL0.5
Basomedial amygdaloid nucleuscontraBM0.5
Bed nucleus of the stria terminaliscontraBST0.5
Central amygdaloid nucleuscontraCe0.5
Anterior amygdaloid areacontraAA0.5
Cortical amygdaloid nucleuscontraCAn0.5
Medial amygdaloid nucleuscontraMe0.5
ClaustrumcontraCl0.5
Ventral pallidumcontraVP0.5
Subthalamic nucleuscontraSTh0.5
SubiculumcontraS0.5
Retrosplenial agranular cortexcontraRSA0.5
Cingulate cortexcontraCg0.5
Prelimbic cortexcontraPrL0.5
Infralimbic cortexcontraIL0.5
Frontal association cortexcontraFrA0.5
Insular cortexcontraICX0.5
Perirhinal cortexcontraA350.5
Ectorhinal cortexcontraA360.5
Dorsal peduncular cortexcontraDP0.5
Somatomotoric regionscontraSMR0.5
Nucleus of the posterior commissurecontraPCom0.5
Olfactory-limbic-transitional zonecontraOFLT0.5
Lateral septal nucleus intermediate partcontraLSI0.5
Lateral septal nucleus ventral partcontraLSV0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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