University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Locus coeruleus dorsal part left


Abbreviation
LCD
Color       
Superior regionsLocus coeruleus cell body region

SynonymsAbbr.Language
Locus coeruleus dorsal partLCDEng

SubregionsSide
Caudal dorsal locus coeruleusleft
Extreme dorsal edge of the locus coeruleusleft
Locus coeruleus compact dorsal partleft
Locus coeruleus dorsal edgeleft
Rostral pole of the dorsal division of the locus coeruleusleft

Output to

NameSideAbbr.WeightDetails
Inferior colliculusipsiICOL1
Cerebellar cortexipsiCERC2
Reticular systemipsiRF2
Medial trapezoid nucleusipsiMTz-0.5
Ventral nucleus of the trapezoid bodyipsiVNTB-0.5
Principal sensory trigeminal nucleusipsiPr53
Cochlear nucleusipsiCON2
Raphe magnus nucleusipsiRMg1
Lateral superior oliveipsiLSO-0.5
Superior paraolivary nucleusipsiSPO-0.5
Lateral hypothalamic nucleusipsiLHN1
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM1
Supraoptic nucleus [Supraoptic region]ipsiSO3
Nucleus properipsiSOnP1
ThalamusipsiT3
Ventral posterior thalamic complex medial partipsiVPTm3
Posteromedial thalamic nucleusipsiPMTN3
HabenulaipsiHAB3
Lateral habenular nucleusipsiLHb3
Caudate putamenipsiCPu2
Cerebral cortexipsiCEC3
HippocampusipsiHIPP3
Dentate gyrusipsiDG3
Dorsal hippocampus dentate gyrusipsiDDG3
Ventral hippocampus dentate gyrusipsiVDG3
Dorsal hilus of the dentate gyrusipsiHildo2
Ventral hilus of the dentate gyrusipsiHilVe2
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus ventral partipsiCA1v3
Field CA2 of hippocampusipsiCA2-0.5
Field CA3 of hippocampusipsiCA3-0.5
Field CA3 of hippocampus ventral partipsiCA3v3
Ventral hippocampusipsiHIPPv-0.5
Fornixipsif3
Entorhinal cortexipsiEnt3
Piriform cortexipsiPir3
Anterior cingulate cortexipsiACC3
Cingulate cortex area 1ipsiCg13
Posterior cingulate cortexipsiPCC3
Prelimbic cortexipsiPrL3
NeocortexipsiNEOCX-0.5
Frontal association cortexipsiFrA3
Parietal association cortexipsiPtA3
Suprarhinal regionipsiSRR3
Prefrontal cortexipsiPFC3
Prefrontal cortex supragenual partipsisgPFC3
Motoric regionsipsiM3
Sensory regionsipsiSR3
Primary somatosensory cortex barrel fieldipsiS1BF3
Visual regionsipsiVR3
Secondary visual cortexipsiV23
Medial orbital cortexipsiMO3
Olfactory bulb A16ipsiMOB3
Septal regionipsiSER3
Lumbar segmentsipsiLSeg-0.5
Inferior colliculuscontraICOL1
Cerebellar cortexcontraCERC1
Reticular systemcontraRF2
Medial trapezoid nucleuscontraMTz2
Ventral nucleus of the trapezoid bodycontraVNTB2
Cochlear nucleuscontraCON2
Lateral superior olivecontraLSO3
Superior paraolivary nucleuscontraSPO2
ThalamuscontraT1
Lateral group of the dorsal thalamuscontraLAT2
Caudate putamencontraCPu1
HippocampuscontraHIPP2
Piriform cortexcontraPir3
Frontal association cortexcontraFrA2
Prefrontal cortexcontraPFC1
Distal colonipsiOrgsColonDi-10

Input from

NameSideAbbr.WeightDetails
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Arcuate nucleusipsiArc-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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