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Rat connectome



Cochlear nucleus left


Abbreviation
CON
Color       
Superior regionsCochlear system

SynonymsAbbr.Language
Auditory brainstem nucleus  
Cochlear nucleusCON 
Cochlear nuclei Eng

SubregionsSide
Anteroventral cochlear nucleusleft
Border between ventral and dorsal cochlear nucleusleft
Dorsal cochlear nucleusleft
Granular layer of the cochlear nucleileft
Granule cell domains of the cochlear nucleusleft
Lateral cochlear nucleusleft
Midway cochlear nucleusleft
Multipolar cells of the cochlear nucleusleft
Posteroventral cochlear nucleusleft
Superficial glial zone of the cochlear nucleileft
Ventral cochlear nucleusleft
Posterior subpeduncular corner of the cochlear nucleus left
Anterior subpeduncular corner of the cochlear nucleus left
Cochlear nucleus caudal partleft
Cochlear nucleus intermediate partleft

Output to

NameSideAbbr.WeightDetails
Subarachnoidal spaceipsisuba0
Dorsal nucleus of the lateral lemniscusipsiDLL-0.5
Intermediate nucleus of the lateral lemniscusipsiILL1
Ventral nucleus of the lateral lemniscusipsiVLL3
Inferior colliculusipsiICOL3
Central nucleus of the inferior colliculusipsiCIC3
Center of the central nucleus of the inferior colliculusipsiCICC-0.5
Central nucleus of the inferior colliculus dorsal partipsiCICD0.5
Central nucleus of the inferior colliculus ventral partipsiCICV0.5
External cortex of the inferior colliculusipsiECIC-0.5
Dorsal cortex of the inferior colliculusipsiDCIC-0.5
Superior colliculusipsiSC-0.5
Ventrolateral tegmental areaipsiVLTg-0.5
Subcollicular tegmentumipsiTGAs0
CerebellumipsiCERE0
Posterior lobe vermis midline part lobule 7ipsiPLVERMiL70.5
Posterior lobe vermis midline part lobule 8ipsiPLVERMiL80.5
Posterior lobe vermis midline part lobule 9ipsiPLVERMiL90.5
Posterior lobe vermis midline part lobule 10ipsiPLVERMiL100.5
Posterior lobe vermis midline part lobule 5ipsiPLVERMiL50.5
Posterior lobe vermis midline part lobule 6ipsiPLVERMiL60.5
PonsipsiP-0.5
Reticular systemipsiRF3
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus ventral part caudalipsiPNRVC0
Pontine reticular nucleus caudal partipsiPNC-0.5
Giant neurons of the lateral pontine caudal reticular formationipsiGiPNCL-0.5
Gigantocellular reticular nucleusipsiGi0
Trapezoid bodyipsitz-0.5
Nucleus of the trapezoid bodyipsiTz0
Lateral nucleus of the trapezoid bodyipsiLNTB-0.5
Medial trapezoid nucleusipsiMTz-0.5
Medial half of the medial nucleus of the trapezoid bodipsiMTzM-0.5
Ventral nucleus of the trapezoid bodyipsiVNTB-0.5
Facial nucleus medial partipsi7M0
CochleaipsiCO3
Otolith organipsiOto-0.5
SacculeipsiSac-0.5
UtriculeipsiUtri-0.5
Ampulla of the posterior semicircular canalipsiAmpuPS-0.5
Lateral semicircular canalipsiLscc0
Superior semicircular canal LSipsiSscc0
Dorsal acoustic striaipsidas-2
Dorsal column nucleiipsiDCN1
Anterior inferior oliveipsiAIO-0.5
Periolivary areaipsiPOA-0.5
Caudal periolivary nucleusipsiCPO3
Dorsal periolivary regionipsiDPO3
Lateroventral periolivary nucleusipsiLVPO1
Rostral periolivary regionipsiRPO3
Superior oliveipsiSuOLi3
Lateral superior oliveipsiLSO2
Medial superior oliveipsiMSO-0.5
Caudal superior olivary complexipsiSuOLiC3
Superior paraolivary nucleusipsiSPO1
Lateral paragigantocellular nucleusipsiLPGi3
Lateral paragigantocellular nucleus rostrocaudal partipsiLPGirc-0.5
Lateral paragigantocellular nucleus dorsoventral partipsiLPGidv-0.5
Lateral paragigantocellular nucleus ventral partipsiLPGiv1
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR2
Paraventricular hypothalamic nucleusipsiPa2
Acoustic striaipsias-0.5
Intermediate acoustic striaipsiinas-2
Ventral acoustic striaipsivas-0.5
Lateral lemniscusipsill-0.5
Ventral half of the lateral lemniscusipsillvh3
Commissure of Probstipsicop1
Cisterna cerebellomedullarisipsiCistcm-3
Central amygdaloid nucleusipsiCe-0.5
Subarachnoidal spacecontrasuba0
Nuclei of the lateral lemniscuscontraNLL3
Dorsal nucleus of the lateral lemniscuscontraDLL1
Intermediate nucleus of the lateral lemniscuscontraILL1
Ventral nucleus of the lateral lemniscuscontraVLL1
Inferior colliculuscontraICOL3
Central nucleus of the inferior colliculuscontraCIC2
Central nucleus of the inferior colliculus dorsal partcontraCICD3
Central nucleus of the inferior colliculus ventral partcontraCICV3
External cortex of the inferior colliculuscontraECIC0.5
Superior colliculuscontraSC-0.5
Ventrolateral tegmental areacontraVLTg4
Subcollicular tegmentumcontraTGAs-0.5
Precuneiform areacontraPCnFa-1
Trapezoid bodycontratz-0.5
Nucleus of the trapezoid bodycontraTz3
Medial trapezoid nucleuscontraMTz-0.5
Principal cells of the calyces of Held in the medial nucleus of the trapezoid bodycontraMTzCp-0.5
Ventral nucleus of the trapezoid bodycontraVNTB-0.5
Cochlear nucleuscontraCON-0.5
Anteroventral cochlear nucleuscontraAVCON-0.5
Dorsal cochlear nucleuscontraDC-0.5
Dorsal cochlear nucleus deep layercontraDCdL3
Dorsal cochlear nucleus fusiform layercontraDCFu2
Dorsal cochlear nucleus superficial layercontraDCNsL1
Posteroventral cochlear nucleuscontraPVCON-0.5
Ventral cochlear nucleuscontraVC3
Caudal periolivary nucleuscontraCPO-0.5
Medioventral periolivary nucleuscontraMVPO3
Rostral periolivary regioncontraRPO3
Superior olivecontraSuOLi3
Medial superior olivecontraMSO-0.5
Superior paraolivary nucleuscontraSPO3
Lateral part of posterior thalamic nuclear groupcontraPoLa0
Lateral lemniscuscontrall-0.5
Ventral half of the lateral lemniscuscontrallvh3
Dorsal lateral lemniscuscontradll1
Cisterna cerebellomedullariscontraCistcm-3
Medial geniculate nucleus rostral partcontraMGR0
Hypoglossal nerveipsi12P0.5
Hypoglossal nervecontra12P-0.5

Input from

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscusipsiNLL-0.5
Inferior colliculusipsiICOL-0.5
Central nucleus of the inferior colliculusipsiCIC-0.5
Deep gray layer of the superior colliculusipsiDpG-0.5
Rostral dorsal tegmentumipsiRDTg3
Edinger Westphal nucleusipsiEW3
PonsipsiP3
A4 noradrenaline cellsipsiA43
A5 noradrenaline cellsipsiA5-0.5
Rostral part of A7ipsiRA73
Locus coeruleusipsiLC3
Locus coeruleus dorsal partipsiLCD2
Locus coeruleus rostral partipsiLCRo1.5
Pontine nucleiipsiPn-0.5
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF3
Pontine reticular nucleus lateral partipsiPRNL-0.5
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus magnocellular partipsiLRtMC-0.5
Lateral reticular nucleus parvicellular partipsiLRtPC0
Lateral reticular nucleus subtrigeminal partipsiLRtS50
Ventral part of the medullary reticular nucleus dorsal partipsivMdDd-0.5
Ventral nucleus of the trapezoid bodyipsiVNTB3
Ventral most portion of the trapezoid bodyipsiVMVNTB-0.5
Dorsoventral part of the ventral nucleus of the trapezoid bodyipsiVNTBdv-0.5
Subcoeruleus nucleusipsiSubC3
Facial nucleusipsi7-0.5
Hypoglossal nucleusipsi12S-0.5
Trigeminal nucleusipsi5-0.5
Mesencephalic trigeminal nucleusipsiMe50
Motor trigeminal nucleusipsiMo50
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleusipsiSp5nc-0.5
Spinal trigeminal nucleus caudal partipsiSp5C3
Spinal trigeminal nucleus interpolar partipsiSp5I3
Anteroventral cochlear nucleusipsiAVCON-0.5
Octopus cells of the posterior ventral cochlear nucleusipsiPVCONoc-0.5
Cochlear root of the vestibulocochlear nerveipsi8cn-0.5
Cochlear root neuronsipsiCORN-0.5
Vestibular nucleiipsiVnc-0.5
Medial vestibular nucleusipsiMVe-0.5
Dorsal raphe nucleusipsiDR3
Superior central raphe nucleusipsiCS3
Pontine raphe nucleusipsiPnR3
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
B6 subnucleusipsiB63
B7 cell groupipsiB7CG3
Dorsal column nucleiipsiDCN1
Cuneate nucleusipsiCu3
Cuneate nucleus dorsal partipsiCuD3
Cuneate nucleus lateral partipsiCuLa1
Cuneate nucleus rostral partipsiCuRo-0.5
Cuneate nucleus rostrocaudal partipsiCurc2
Cuneate nucleus ventral partipsiCuV1
Middle part of cuneate nucleusipsiCuM0
GracileipsiGra-0.5
Gracile nucleus principal partipsiGr-0.5
External cuneate nucleusipsiECu3
Nucleus of RolleripsiRo-0.5
Inferior oliveipsiIO-0.5
Inferior olive lateral partipsiIOL-0.5
Medial oliveipsiMON-0.5
Lateroventral periolivary nucleusipsiLVPO-0.5
Rostral periolivary regionipsiRPO-0.5
Caudal part of the rostral periolivary regionipsiRPOC-0.5
Superior oliveipsiSuOLi3
Lateral superior oliveipsiLSO2
Superior paraolivary complex lateral partipsiSOCl-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
Parietal association cortexipsiPtA0
Parietal cortex posterior area rostral partipsiParPR0
Temporal association cortex 1ipsiTeA0
Deep gray matter of the temporal association cortex 1ipsiTeAdL3
Caudolateral aspect of the temporal cortex layer 4ipsiTECLL43
Caudolateral aspect of the temporal cortex deep part of layer 5ipsiTECLdL53
Auditory regionsipsiAU-0.5
Primary auditory cortexipsiAu13
Primary auditory cortex layer 5 bipsiAu1L5b3
Ectorhinal cortexipsiA360
Sensory regionsipsiSR0
Primary somatosensory cortexipsiS10
Visual regionsipsiVR0
Dorsal root ganglion C2ipsiDRGC2-0.5
Central nucleus of the inferior colliculuscontraCIC1
Rostral dorsal tegmentumcontraRDTg1.5
PonscontraP1.5
A4 noradrenaline cellscontraA41.5
Rostral part of A7contraRA71.5
Locus coeruleuscontraLC1.5
Locus coeruleus dorsal partcontraLCD2
Locus coeruleus rostral partcontraLCRo1
Ventrolateral reticular formationcontraVLRF1.5
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Lateral reticular nucleuscontraLRt-0.5
Ventral part of the medullary reticular nucleus dorsal partcontravMdDd-0.5
Ventral nucleus of the trapezoid bodycontraVNTB3
Subcoeruleus nucleuscontraSubC1.5
Spinal trigeminal nucleuscontraSp5nc-0.5
Spinal trigeminal nucleus caudal partcontraSp5C1
Spinal trigeminal nucleus interpolar partcontraSp5I1
Cochlear nucleuscontraCON-0.5
Anteroventral cochlear nucleuscontraAVCON1
Anterior division of the anteroventral cochlear nucleuscontraAAVCON-0.5
Dorsal cochlear nucleuscontraDC0.5
Dorsal cochlear nucleus deep layercontraDCdL-0.5
Dorsal cochlear nucleus fusiform layercontraDCFu-0.5
Dorsal cochlear nucleus multipolar cellscontraDCmuC-0.5
Posteroventral cochlear nucleuscontraPVCON-0.5
Anterior part of the posteroventral cochlear nucleuscontraPVCONa-0.5
Ventral cochlear nucleuscontraVC3
Ventral cochlear nucleus anterior partcontraVCA1
Ventral cochlear nucleus posterior partcontraVCP-0.5
Ventral cochlear nucleus multipolar cellscontraVCmuc-0.5
Cochlear nucleus caudal partcontraCONc-0.5
Cochlear root of the vestibulocochlear nervecontra8cn-0.5
Dorsal column nucleicontraDCN-0.5
Cuneate nucleuscontraCu1
External cuneate nucleuscontraECu-0.5
Inferior olivecontraIO-0.5
Inferior olive lateral partcontraIOL-0.5
Superior olivecontraSuOLi3
Superior paraolivary complex lateral partcontraSOCl-0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Ventrobasal complexcontraVB-0.5
Deep gray matter of the temporal association cortex 1contraTeAdL3
Caudolateral aspect of the temporal cortex layer 4contraTECLL42
Caudolateral aspect of the temporal cortex deep part of layer 5contraTECLdL52
Primary auditory cortexcontraAu11
Spiral ganglionipsispiG-0.5
Spiral ganglion cellsipsispiGC-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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