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Rat connectome



Medial agranular prefrontal cortex rostral part left


Abbreviation
rAGm
Color       
Superior regionsMedial agranular prefrontal cortex

SynonymsAbbr.Language
Rostral part medial agranular prefrontal cortex  
Rostral level of the medial agranular cortex Eng
Rostral medial prefrontal cortex  
Medial agranular prefrontal cortex rostral partrAGmEng
Rostral medial agranular field of the motor cortex Eng

SubregionsSide
Dorsally adjacent rostral precentral arealeft
Eye motoric cortexleft
Eyelid open motor cortexleft
Medial agranular prefrontal cortex rostralmost partleft
Medial agranular prefrontal cortex rostral part layersleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG3
Nucleus of DarkschewitschipsiDk0
Medial accessory oculomotor nucleusipsiMA30.5
Rostral interstitial nucleus of medial longitudinal fasciculusipsiRI0.5
Rostral preoculomotor nucleiipsiOMCR0.5
Periaqueductal grayipsiPAG3
Lateral periaqueductal grayipsiLPAG3
Medial pontine nucleusipsiMPoN2
Superior colliculusipsiSC2
Intermediate gray layer of the superior colliculusipsiInG1
Rostral two-thirds of the stratum griseum intermediale of the superior colliculusipsiSCirtt1
Caudal one-third of the lateral part of the stratum griseum intermediale of the superior colliculusipsiSCiLcot1.5
Deep gray layer of the superior colliculusipsiDpG1
Rostral two-thirds of the stratum griseum profundum of the superior colliculusipsiDpGrtt1
Superior colliculus medial partipsimSC0
Substantia nigra A9ipsiSN-0.5
Substantia nigra reticular partipsiSNR1
Interstitial nucleus of CajalipsiInC0
Locus coeruleusipsiLC2
Reticular formation at trigeminal motor nucleusipsiRF52
Nucleus reticularis subcuneiformisipsiRScf2
Pontine reticular nucleus oral partipsiPnO0.5
Pontine reticular nucleus caudal partipsiPNC3
Cuneiforme nucleusipsiCnF2
Intertrigeminal nucleusipsiI52
Juxtatrigeminal area dorsal partipsiJx5D0
Mesencephalic trigeminal nucleus medial partipsiperiMe53
Mesencephalic trigeminal nucleus rostral partipsiMe5R4
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp2
Dorsal raphe nucleusipsiDR-0.5
Anteromedial thalamic nucleusipsiAM2
Anteromedial thalamic nucleus rostral partipsiAMr0
Anteromedial thalamic nucleus ventral partipsiAMV2
Anteroventral thalamic nucleus ventromedial partipsiAVVM1
Interoanteromedial thalamic nucleusipsiIAM2
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL3
Gelatinosus thalamic nucleusipsiG2
Paracentral thalamic nucleusipsiPC3
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh2
Posterior thalamic nuclear groupipsiPo1
Mediodorsal thalamic nucleusipsiMD2
Mediodorsal thalamic nucleus lateral partipsiMDL-1
Mediodorsal thalamic nucleus posterior portion of the paralaminar partipsiMDPLP2
Ventral anterior-lateral complex of the thalamusipsiVAL2
Ventrolateral thalamic nucleusipsiVL3
Ventral posteromedial thalamic nucleusipsiVPM0
Ventromedial thalamic nucleusipsiVM2
Lateral posterior thalamic nucleus medial partipsiLPM-1
Laterodorsal thalamic nucleusipsiLD2
Posterior groupipsiPTG2
Reticular thalamic nucleusipsiRt3
Ventral medial nucleus of the thalamusipsiVMT2
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF2
Anterior pretectal nucleusipsiAPT0.5
Anterior basolateral nucleusipsiBLA-0.5
Posterior basolateral nucleusipsiBLP-0.5
ClaustrumipsiCl3
Accumbens nucleus rostral partipsiAcR-0.5
Dorsal striatumipsiCPud3
Dorsocentral striatumipsiDCS1
Rostral striatumipsiCPur3
Lateral striatumipsiCPul2
Subthalamic nucleusipsiSTh1
PresubiculumipsiPrS1
Lateral entorhinal cortex dorsal partipsiLEntd-0.5
Retrosplenial agranular cortexipsiRSA-0.5
Area 29d rostral partipsiA29dR0
Infralimbic cortexipsiIL1
Granular insular cortexipsiGI3
Perirhinal cortex ventral portionipsiPRhv-0.5
Lateral agranular prefrontal cortexipsiAGl2.5
Medial agranular prefrontal cortex caudal partipsicAGm-0.5
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Primary visual cortexipsiV13
Secondary visual cortex medial areaipsiV2M3
Secondary visual cortex lateral areaipsiV2L3
Ventral part of the lateral orbital cortexipsiVeLO3
Medial orbital cortexipsiMO1
Nucleus of the posterior commissureipsiPCom-0.5
Central graycontraCG1
Periaqueductal graycontraPAG1
Lateral periaqueductal graycontraLPAG1
Intermediate gray layer of the superior colliculuscontraInG0
Superior colliculus medial partcontramSC0
Locus coeruleuscontraLC1
Pontine reticular nucleus caudal partcontraPNC2
Intertrigeminal nucleuscontraI51
Mesencephalic trigeminal nucleus medial partcontraperiMe51
Mesencephalic trigeminal nucleus rostral partcontraMe5R1
Mesencephalic trigeminal nucleus caudal polecontraMe5cp1
Anteromedial thalamic nucleuscontraAM2
Anteromedial thalamic nucleus rostral partcontraAMr0
Anteromedial thalamic nucleus ventral partcontraAMV1
Anteroventral thalamic nucleus ventromedial partcontraAVVM0.5
Interoanteromedial thalamic nucleuscontraIAM1
Centrolateral thalamic nucleuscontraCL1
Gelatinosus thalamic nucleuscontraG2
Paracentral thalamic nucleuscontraPC1
Laterodorsal thalamic nucleuscontraLD0
ClaustrumcontraCl2.5
Accumbens nucleus rostral partcontraAcR-0.5
Dorsal striatumcontraCPud3
Rostral striatumcontraCPur2
Lateral striatumcontraCPul1
Lateral entorhinal cortex dorsal partcontraLEntd-0.5
Granular insular cortexcontraGI2.5
Perirhinal cortex ventral portioncontraPRhv-0.5
Medial agranular prefrontal cortexcontraAGm-0.5
Medial agranular prefrontal cortex caudal partcontracAGm0
Ventral part of the lateral orbital cortexcontraVeLO2.5
Intermediomedial cell column C3contraIMMC3-0.5
Cervical segment 4contraCS4-0.5
Intermediomedial cell column C4contraIMMC4-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 3 C4contraSCL3C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 1 C4contraSCL1C4-0.5
Spinal cord layer 2 C4contraSCL2C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Cervical segment 5contraCS5-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 3 C5contraSCL3C5-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Spinal cord layer 1 C5contraSCL1C5-0.5
Spinal cord layer 2 C5contraSCL2C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Lumbar segment 3contraL3-0.5
Intermediomedial cell column L3contraIMML3-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 3 L3contraSCL3L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 2 L3contraSCL2L3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Lumbar segment 4contraL4-0.5
Intermediomedial cell column L4contraIMML4-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 3 L4contraSCL3L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 2 L4contraSCL2L4-0.5
Spinal cord layer 7 L4contraSCL7L4-0.5

Input from

NameSideAbbr.WeightDetails
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1.5
Paracentral thalamic nucleusipsiPC1
Parafascicular thalamic nucleusipsiPF1
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo2
Suprageniculate thalamic nucleusipsiSG-0.5
Mediodorsal thalamic nucleusipsiMD2
Mediodorsal thalamic nucleus lateral partipsiMDL2
Mediodorsal thalamic nucleus medial partipsiMDM2
Ventral anterior-lateral complex of the thalamusipsiVAL2
Ventrolateral thalamic nucleusipsiVL1
Ventral posteromedial thalamic nucleusipsiVPM0
Ventromedial thalamic nucleusipsiVM2
Lateral posterior thalamic nucleus mediorostral part dorsal regionipsiLPMRd2
Lateral posterior thalamic nucleus mediorostral part ventral regionipsiLPMRv1
ClaustrumipsiCl1
Lateral entorhinal cortexipsiLEnt1
Area 29d rostral partipsiA29dR1
Parietal cortex posterior area layersipsiParPLa1
Parietal cortex posterior area medial portionipsimPPC1
Parietal cortex posterior area caudolateral partipsiParPcLa0.5
Auditory regionsipsiAU3
Insular cortexipsiICX1
Caudalmost area of the dysgranular insular cortexipsiDIvCM3
Caudalmost area of the granular insular cortexipsiGICm3
Perirhinal cortexipsiA351
Perirhinal cortex rostral partipsiPRro-0.5
Ectorhinal cortexipsiA361
Ectorhinal cortex rostral partipsiEctR-0.5
Primary somatosensory cortexipsiS13
Primary somatosensory cortex dysgranular region layer 2ipsiS1DZL22
Primary somatosensory cortex dysgranular region layer 3ipsiS1DZL32
Primary somatosensory cortex dysgranular region layer 4ipsiS1DZL42
Primary somatosensory cortex dysgranular region layer 5ipsiS1DZL52
Primary somatosensory cortex dysgranular region layer 6ipsiS1DZL62
Secondary somatosensory cortexipsiS23
Area 29b caudalmost partcontraA29bcm0.5
Primary somatosensory cortex dysgranular region layer 2contraS1DZL21
Primary somatosensory cortex dysgranular region layer 3contraS1DZL31
Primary somatosensory cortex dysgranular region layer 4contraS1DZL41
Primary somatosensory cortex dysgranular region layer 5contraS1DZL51
Primary somatosensory cortex dysgranular region layer 6contraS1DZL61

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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