University of Rostock

Department of Anatomy

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Rat connectome



Medial raphe nucleus left


Abbreviation
MeR
Color       
Superior regionsMedian raphe nucleus

SynonymsAbbr.Language
Medial raphe nucleusMeR 
Medial raphe Eng

SubregionsSide
Inferior central raphe nucleusleft
Superior central raphe nucleusleft

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscusipsiNLL0.5
Superior colliculusipsiSC-0.5
Ventral tegmental area A10 caudal partipsiVTAcp0.5
Ventral tegmental area rostral partipsiVTAR0.5
Laterodorsal tegmental nucleusipsiLDTg1.5
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg1.5
Pedunculopontine tegmental nucleusipsiPPTg0.5
Locus coeruleusipsiLC2
Pontine reticular nucleusipsiPRN-0.5
Medullary reticular nucleusipsiMdD-0.5
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Substantia innominataipsiSI3
Substantia innominata anterior partipsiSIA2
Substantia innominata posterior partipsiSIP3
Magnocellular preoptic nucleusipsiMCPO3
Lateral zoneipsiLHA2
Lateral hypothalamic areaipsiLH-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Paraventricular hypothalamic nucleusipsiPa-0.5
Supraoptic nucleus dorsal partipsiSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV1
Lateral habenular nucleusipsiLHb3
Lateral habenular nucleus medial partipsiLHbM3
Medial forebrain bundleipsimfb-2
Basal nucleus ventral divisonipsiBncV-0.5
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial divisionipsiBSTM2
Medial globus pallidusipsiMGP3
Ventral pallidumipsiVP3
StriatumipsiSTR-0.5
Caudate putamenipsiCPu-0.5
HippocampusipsiHIPP-0.5
Dorsal hippocampusipsiHIPPd-0.5
Dorsal hippocampus dentate gyrusipsiDDG3
Ventral hippocampus dentate gyrusipsiVDG3
Ventral hippocampusipsiHIPPv-0.5
Auditory regionsipsiAU3
Medial prefrontal cortexipsimPFC-0.5
Interpeduncular nucleusipsiIP1
Olfactory cortexipsiOcx2
Septal regionipsiSER2
Lateral septal nucleusipsiLS2
Lateral septal nucleus rostral partipsiLSr-0.5
Nuclei of the lateral lemniscuscontraNLL0.5
Laterodorsal tegmental nucleuscontraLDTg1
Ventral tegmental nucleuscontraVTg0.5
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg0.5
Locus coeruleuscontraLC1
Lateral zonecontraLHA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Supraoptic nucleus dorsal partcontraSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]contraSOV-0.5
Lateral habenular nucleus medial partcontraLHbM3
Basal nucleus ventral divisoncontraBncV-0.5
Bed nucleus of the stria terminalis caudal part caudoventral regioncontraBSTCacv-0.5
Bed nucleus of the stria terminalis caudal part perifornical regioncontraBSTCapf-0.5
Bed nucleus of the stria terminalis lateral divisioncontraBSTL-0.5
Bed nucleus of the stria terminalis medial divisioncontraBSTM-0.5
Dorsal hippocampuscontraHIPPd-0.5
Ventral hippocampuscontraHIPPv-0.5
Auditory regionscontraAU3

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA-0.5
Preoptic regionipsiPREO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral hypothalamic areaipsiLH-0.5
Medial division of the hypothalamusipsiMdH-0.5
Posterior hypothalamic areaipsiPHA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo1
Ventromedial hypothalamic nucleusipsiVMH1
Paraventricular thalamic nucleusipsiPV1
Medial habenular nucleusipsiMHb-0.5
Bed nucleus of the stria terminalis oval nucleusipsiBSTo-10
Nucleus of the lateral olfactory tractipsiLOT-0.5
Medial globus pallidusipsiMGP-0.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc1
Area 29ipsiA29-0.5
Frontal association cortexipsiFrA-0.5
Frontal cortex area 2ipsiFr2-0.5
Frontal cortex area 3ipsiFr3-0.5
Parietal cortex posterior area dorsal partipsiParPD-0.5
Parietal cortex posterior area rostral partipsiParPR-0.5
Temporal association area 3 rostral partipsiTe3R-0.5
Ventral temporal association cortexipsiTev-0.5
Sensory regionsipsiSR-0.5
Primary visual cortexipsiV1-0.5
Secondary visual cortexipsiV2-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Posterior hypothalamic nucleus caudal partcontraPHCa0.5
Posterior hypothalamic nucleus rostral partcontraPHRo0.5
Ventromedial hypothalamic nucleuscontraVMH0
Paraventricular thalamic nucleuscontraPV0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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