University of Rostock

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Rat connectome



Dorsal horn C3 left


Abbreviation
DHC3
Color       
Superior regionsSpinal cord layers C3

SynonymsAbbr.Language
Dorsal horn C3DHC3Eng

SubregionsSide
Base of dorsal horn C3left
Deep dorsal horn C3left
Intermediate zone of dorsal horn C3left
Neck of dorsal horn C3left
Nucleus proprius C3left
Superficial dorsal horn C3left

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Nuclei of the lateral lemniscusipsiNLL1
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Central tegmental field dorsal partipsiTGACd0
Laterodorsal tegmental nucleusipsiLDTg1
Dorsal tegmental nucleusipsiDTg0
Pedunculopontine tegmental nucleusipsiPPTg1.5
Mesencephalic reticular formationipsiMRF1
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus central partipsiLPBC-0.5
Lateral parabrachial nucleus external partipsiLPBE-0.5
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus magnocellular partipsiLRtMC2
Lateral reticular nucleus parvicellular partipsiLRtPC1
Lateral reticular nucleus subtrigeminal partipsiLRtS50
Mesencephalic trigeminal nucleusipsiMe51
Insular trigeminal-cuneatus lateralis nucleusipsii5CuL1
Deep magnocellular layer of the medullary dorsal hornipsiDmMDH-0.5
Spinal trigeminal nucleus interpolar part border regionipsiSp5Ib1
Spinal trigeminal nucleus interpolar part dorsolateralipsiSp5IdL1
Spinal vestibular nucleusipsiSpVe-0.5
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus magnocellular partipsiMVeMC-0.5
Medial vestibular nucleus parvicellular partipsiMVePC-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tractipsiSol1
Caudal ventrolateral medullaipsiCVLM1
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Cuneate nucleusipsiCu-0.5
Gracile nucleus principal partipsiGr-0.5
Inferior olive dorsal nucleusipsiIOD-0.5
Retrotrapezoid nucleusipsiRTN1
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH-0.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Posterior groupipsiPTG0.5
Zona incertaipsiZI-0.5
Lateral funiculusipsilf-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Central amygdaloid nucleus anterior partipsiCeAn-0.5
Basal gangliaipsiBG-0.5
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Ventrolateral funiculusipsivLF-2
Central graycontraCG-0.5
Nuclei of the lateral lemniscuscontraNLL1
Inferior colliculuscontraICOL3
Superior colliculuscontraSC3
Tegmental areacontraTGA-0.5
Central tegmental field dorsal partcontraTGACd0
Laterodorsal tegmental nucleuscontraLDTg1
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg1
Mesencephalic reticular formationcontraMRF3
Cuneiforme nucleuscontraCnF-0.5
Parabrachial nucleuscontraPB-0.5
Lateral parabrachial nucleuscontraLPB0.5
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC1
Lateral reticular nucleus subtrigeminal partcontraLRtS51
Spinal vestibular nucleuscontraSpVe-0.5
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC-0.5
Medial vestibular nucleus parvicellular partcontraMVePC-0.5
Nucleus of the solitary tractcontraSol3
Caudal ventrolateral medullacontraCVLM1
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Retrotrapezoid nucleuscontraRTN0.5
HypothalamuscontraHYPO-0.5
Posterior groupcontraPTG3

Input from

NameSideAbbr.WeightDetails
Adventitia of the middle meningeal arteryipsimimea-0.5
Superficial temporal arteryipsista2
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Pedunculopontine tegmental nucleusipsiPPTg1
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC2
Mesencephalic reticular formationipsiMRF0.5
Deep mesencephalic nucleus medial partipsiDpMeM-0.5
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleus crescent partipsiLPBCr1
Lateral parabrachial nucleus dorsal partipsiLPBD0.5
Lateral parabrachial nucleus external partipsiLPBE0.5
Lateral parabrachial nucleus ventral partipsiLPBV0.5
Caudal portion of the parabrachial nucleus central lateral partipsiPBCeLC1
Rostral portion of the parabrachial nucleus central lateral partipsiPBCeLR1
Parabrachial nucleus dorsal partipsiPBD-0.5
Parabrachial nucleus medialipsiPBnMe2
Medial parabrachial nucleus external partipsiMPBE0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA2
Subnucleus reticularis dorsalisipsiSRD-0.5
Medial medullary reticular nucleusipsiMMdD1
Subcoeruleus nucleusipsiSubC3
Mesencephalic trigeminal nucleusipsiMe51
Trigeminal ganglionipsi5Gn3
Mandibular region of the trigeminal ganglionipsi5GnMa2
Medial vestibular nucleusipsiMVe-0.5
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus rostral partipsiMVeR1
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tract commissural partipsiSolC-0.5
Raphe nucleiipsiRAN3
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
Ventral respiratory groupipsiVReG-0.5
Cuneate nucleusipsiCu-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Rostral ventral medulla oblongataipsiRVMeO3
Lateral hypothalamic areaipsiLH1
A11 dopamine cellsipsiA111
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Dorsal root ganglion C1ipsiDRGC1-0.5
Dorsal root ganglion C2ipsiDRGC2-0.5
Paralemniscal nucleuscontraPL-0.5
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Pedunculopontine tegmental nucleuscontraPPTg1
A5 noradrenaline cellscontraA52
A7 noradrenaline cellscontraA72
Locus coeruleuscontraLC1
Mesencephalic reticular formationcontraMRF0.5
Parabrachial nucleuscontraPB2
Koelliker Fuse nucleuscontraKF4
Lateral parabrachial nucleus crescent partcontraLPBCr1
Lateral parabrachial nucleus dorsal partcontraLPBD0.5
Lateral parabrachial nucleus external partcontraLPBE0.5
Lateral parabrachial nucleus ventral partcontraLPBV0.5
Caudal portion of the parabrachial nucleus central lateral partcontraPBCeLC0.5
Rostral portion of the parabrachial nucleus central lateral partcontraPBCeLR0.5
Parabrachial nucleus medialcontraPBnMe2
Medial parabrachial nucleus external partcontraMPBE0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Medial medullary reticular nucleuscontraMMdD1
Subcoeruleus nucleuscontraSubC2
Mesencephalic trigeminal nucleuscontraMe50.5
Spinal trigeminal nucleus caudal partcontraSp5C-0.5
Trigeminal ganglioncontra5Gn3
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nervecontra5GnMaEm3
Ophthalmomaxillary region of the trigeminal ganglioncontra5GnOM-0.5
Caudal area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnROM3
Superficial part of the trigeminal ganglioncontra5GnS3
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus rostral partcontraMVeR-0.5
Lateral vestibular nucleuscontraLVe2
Raphe nucleicontraRAN3
Lateral paragigantocellular nucleuscontraLPGi1
A11 dopamine cellscontraA110.5
Parafascicular thalamic nucleus prerubral partcontraPFPR0.5
Primary somatosensory cortex barrel fieldcontraS1BF-0.5
Cervical dorsal horncontraCSegD-0.5
Chorda tympaniipsi7fnChoTy1
Inferior alveolar nerveipsiialv1
Auriculotemporal nerveipsi5V3Aute2
Lingual nerveipsi5V3Li0
Median nerveipsimen-0.5
Mylohyoid nerveipsimyhy1
Auricolotemporal nerveipsiautemp2
Auricular conchaipsiOrgAuCo-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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