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Rat connectome

Basal ganglia left

Abbreviation	BG
Color
Superior regions	Telencephalon

Synonyms	Abbr.	Language
Ganglia basales		Lat
Nuclei basales		Lat
Basalganglia
Basal nuclei
Basal ganglia	BG	Eng

Subregions	Side
Claustrum	left
Corpus striatum	left
Subthalamic nucleus	left
Striatohypothalamic nucleus	left

Output to

Name	Side	Abbr.	Weight
Mediodorsal thalamic nucleus lateral part	ipsi	MDL	-0.5
Mediodorsal thalamic nucleus paralemellar division	ipsi	MDpL	-0.5
Ventral posterior thalamic complex medial part	ipsi	VPTm	-2
Rostral half of the ventral posterior thalamic complex medial part	ipsi	VPTmrh	-2
Entorhinal cortex	ipsi	Ent	0
Lateral entorhinal cortex	ipsi	LEnt	1
Lateral entorhinal cortex lateral part	ipsi	LEntLa	1.5
Lateral entorhinal cortex medial part	ipsi	LEntM	0.5
Lateral entorhinal cortex intermediate part	ipsi	LEnti	1.5
Medial entorhinal cortex	ipsi	MEnt	1
Medial entorhinal cortex lateral part	ipsi	MEntL	1.5
Medial entorhinal field medial part	ipsi	MEntFm	1.5
Intermediate medial entorhinal cortex	ipsi	MEntim	0.5
Frontal association cortex	ipsi	FrA	0
Temporal association cortex 1	ipsi	TeA	3
Auditory regions	ipsi	AU	0
Anterior prefrontal cortex	ipsi	APFC	-0.5
Lateral agranular prefrontal cortex	ipsi	AGl	0
Primary somatosensory cortex	ipsi	S1	0
Primary visual cortex	ipsi	V1	0
Spinal cord layers C1	ipsi	SCLC1	0
Spinal cord layers C2	ipsi	SCLC2	0
Spinal cord layers C3	ipsi	SCLC3	0
Spinal cord layers C4	ipsi	SCLC4	0
Spinal cord layers C5	ipsi	SCLC5	0
Lateral reticular nucleus	contra	LRt	0
Lateral aspect of the caudal pole of the lateral reticular nucleus	contra	LCpLRt	0
Lateral reticular nucleus rostral part	contra	LRtr	0
Dorsomedial part of the middle third of the lateral reticular nucleus	contra	DMMTLRt	0
Spinal trigeminal nucleus ventral part	contra	Sp5ncV	0
Spinal cord layers C1	contra	SCLC1	0
Spinal cord layers C2	contra	SCLC2	0
Spinal cord layers C3	contra	SCLC3	0
Spinal cord layers C4	contra	SCLC4	0
Spinal cord layers C5	contra	SCLC5	0

Input from

Name	Side	Abbr.	Weight
Substantia nigra A9	ipsi	SN	-0.5
Pedunculopontine tegmental nucleus pars compacta	ipsi	PPNC	3
Pedunculopontine tegmental nucleus pars dissipata	ipsi	PPNd	3
Rostral to the nucleus of Darkschewitsch	ipsi	RVMMM	0.5
Lateral cerebellar nucleus	ipsi	CERL	0
Mesencephalic reticular formation	ipsi	MRF	-0.5
Pontine reticular nucleus	ipsi	PRN	-0.5
Cuneiforme nucleus	ipsi	CnF	-0.5
Anteroventral thalamic nucleus	ipsi	AV	3
Central medial thalamic nucleus	ipsi	CM	3
Centre median nucleus	ipsi	CeMe	3
Centrolateral thalamic nucleus	ipsi	CL	3
Posterior thalamic nuclear group	ipsi	Po	3
Mediodorsal thalamic nucleus	ipsi	MD	-0.5
Ventrolateral thalamic nucleus	ipsi	VL	3
Ventral posterior thalamic complex medial part	ipsi	VPTm	3
Ventral posterolateral thalamic nucleus	ipsi	VPL	3
Venteroposterior complex of the dorsal thalamus	ipsi	DORvp	3
Lateral posterior thalamic nucleus	ipsi	LP	3
Subthalamic nucleus	ipsi	STh	2
Lateral entorhinal cortex	ipsi	LEnt	4
Medial entorhinal cortex	ipsi	MEnt	4
Caudal forelimb motor area	ipsi	CFMA	2
Central part of jaw motor area	ipsi	CJMCx	3
Lateral geniculate complex	ipsi	LG	3
Medial geniculate nucleus medial part	ipsi	MGM	3
Area X C1	ipsi	SCL10C1	-0.5
Dorsal horn C1	ipsi	DHC1	-0.5
Spinal cord layer 5 C1	ipsi	SCL5C1	-0.5
Spinal cord layer 3 C1	ipsi	SCL3C1	-0.5
Spinal cord layer 4 C1	ipsi	SCL4C1	-0.5
Area X C2	ipsi	SCL10C2	-0.5
Dorsal horn C2	ipsi	DHC2	-0.5
Spinal cord layer 5 C2	ipsi	SCL5C2	-0.5
Spinal cord layer 3 C2	ipsi	SCL3C2	-0.5
Spinal cord layer 4 C2	ipsi	SCL4C2	-0.5
Area X C3	ipsi	SCL10C3	-0.5
Dorsal horn C3	ipsi	DHC3	-0.5
Spinal cord layer 5 C3	ipsi	SCL5C3	-0.5
Spinal cord layer 3 C3	ipsi	SCL3C3	-0.5
Spinal cord layer 4 C3	ipsi	SCL4C3	-0.5
Area X C4	ipsi	SCL10C4	-0.5
Dorsal horn C4	ipsi	DHC4	-0.5
Spinal cord layer 5 C4	ipsi	SCL5C4	-0.5
Spinal cord layer 3 C4	ipsi	SCL3C4	-0.5
Spinal cord layer 4 C4	ipsi	SCL4C4	-0.5
Area X C5	ipsi	SCL10C5	-0.5
Dorsal horn C5	ipsi	DHC5	-0.5
Spinal cord layer 5 C5	ipsi	SCL5C5	-0.5
Spinal cord layer 3 C5	ipsi	SCL3C5	-0.5
Spinal cord layer 4 C5	ipsi	SCL4C5	-0.5
Area X C6	ipsi	SCL10C6	-0.5
Dorsal horn C6	ipsi	DHC6	-0.5
Spinal cord layer 5 C6	ipsi	SCL5C6	-0.5
Spinal cord layer 3 C6	ipsi	SCL3C6	-0.5
Spinal cord layer 4 C6	ipsi	SCL4C6	-0.5
Area X C7	ipsi	SCL10C7	-0.5
Dorsal horn C7	ipsi	DHC7	-0.5
Spinal cord layer 5 C7	ipsi	SCL5C7	-0.5
Spinal cord layer 3 C7	ipsi	SCL3C7	-0.5
Spinal cord layer 4 C7	ipsi	SCL4C7	-0.5
Area X C8	ipsi	SCL10C8	-0.5
Dorsal horn C8	ipsi	DHC8	-0.5
Spinal cord layer 5 C8	ipsi	SCL5C8	-0.5
Spinal cord layer 3 C8	ipsi	SCL3C8	-0.5
Spinal cord layer 4 C8	ipsi	SCL4C8	-0.5
Area X T1	ipsi	SCL10T1	-0.5
Dorsal horn T1	ipsi	DHT1	-0.5
Spinal cord layer 5 T1	ipsi	SCL5T1	-0.5
Spinal cord layer 3 T1	ipsi	SCL3T1	-0.5
Spinal cord layer 4 T1	ipsi	SCL4T1	-0.5
Area X T2	ipsi	SCL10T2	-0.5
Dorsal horn T2	ipsi	DHT2	-0.5
Spinal cord layer 5 T2	ipsi	SCL5T2	-0.5
Spinal cord layer 3 T2	ipsi	SCL3T2	-0.5
Spinal cord layer 4 T2	ipsi	SCL4T2	-0.5
Area X T3	ipsi	SCL10T3	-0.5
Dorsal horn T3	ipsi	DHT3	-0.5
Spinal cord layer 5 T3	ipsi	SCL5T3	-0.5
Spinal cord layer 3 T3	ipsi	SCL3T3	-0.5
Spinal cord layer 4 T3	ipsi	SCL4T3	-0.5
Area X T4	ipsi	SCL10T4	-0.5
Dorsal horn T4	ipsi	DHT4	-0.5
Spinal cord layer 5 T4	ipsi	SCL5T4	-0.5
Spinal cord layer 3 T4	ipsi	SCL3T4	-0.5
Spinal cord layer 4 T4	ipsi	SCL4T4	-0.5
Area X T5	ipsi	SCL10T5	-0.5
Dorsal horn T5	ipsi	DHT5	-0.5
Spinal cord layer 5 T5	ipsi	SCL5T5	-0.5
Spinal cord layer 3 T5	ipsi	SCL3T5	-0.5
Spinal cord layer 4 T5	ipsi	SCL4T5	-0.5
Area X T6	ipsi	SCL10T6	-0.5
Dorsal horn T6	ipsi	DHT6	-0.5
Spinal cord layer 5 T6	ipsi	SCL5T6	-0.5
Spinal cord layer 3 T6	ipsi	SCL3T6	-0.5
Spinal cord layer 4 T6	ipsi	SCL4T6	-0.5
Area X T7	ipsi	SCL10T7	-0.5
Dorsal horn T7	ipsi	DHT7	-0.5
Spinal cord layer 5 T7	ipsi	SCL5T7	-0.5
Spinal cord layer 3 T7	ipsi	SCL3T7	-0.5
Spinal cord layer 4 T7	ipsi	SCL4T7	-0.5
Area X T8	ipsi	SCL10T8	-0.5
Dorsal horn T8	ipsi	DHT8	-0.5
Spinal cord layer 5 T8	ipsi	SCL5T8	-0.5
Spinal cord layer 3 T8	ipsi	SCL3T8	-0.5
Spinal cord layer 4 T8	ipsi	SCL4T8	-0.5
Area X T9	ipsi	SCL10T9	-0.5
Dorsal horn T9	ipsi	DHT9	-0.5
Spinal cord layer 5 T9	ipsi	SCL5T9	-0.5
Spinal cord layer 3 T9	ipsi	SCL3T9	-0.5
Spinal cord layer 4 T9	ipsi	SCL4T9	-0.5
Area X T10	ipsi	SCL10T10	-0.5
Dorsal horn T10	ipsi	DHT10	-0.5
Spinal cord layer 5 T10	ipsi	SCL5T10	-0.5
Spinal cord layer 3 T10	ipsi	SCL3T10	-0.5
Spinal cord layer 4 T10	ipsi	SCL4T10	-0.5
Area X T11	ipsi	SCL10T11	-0.5
Dorsal horn T11	ipsi	DHT11	-0.5
Spinal cord layer 5 T11	ipsi	SCL5T11	-0.5
Spinal cord layer 3 T11	ipsi	SCL3T11	-0.5
Spinal cord layer 4 T11	ipsi	SCL4T11	-0.5
Area X T12	ipsi	SCL10T12	-0.5
Dorsal horn T12	ipsi	DHT12	-0.5
Spinal cord layer 5 T12	ipsi	SCL5T12	-0.5
Spinal cord layer 3 T12	ipsi	SCL3T12	-0.5
Spinal cord layer 4 T12	ipsi	SCL4T12	-0.5
Area X T13	ipsi	SCL10T13	-0.5
Dorsal horn T13	ipsi	DHT13	-0.5
Spinal cord layer 5 T13	ipsi	SCL5T13	-0.5
Spinal cord layer 3 T13	ipsi	SCL3T13	-0.5
Spinal cord layer 4 T13	ipsi	SCL4T13	-0.5
Area X L1	ipsi	SCL10L1	-0.5
Dorsal horn L1	ipsi	DHL1	-0.5
Spinal cord layer 5 L1	ipsi	SCL5L1	-0.5
Spinal cord layer 3 L1	ipsi	SCL3L1	-0.5
Spinal cord layer 4 L1	ipsi	SCL4L1	-0.5
Area X L2	ipsi	SCL10L2	-0.5
Dorsal horn L2	ipsi	DHL2	-0.5
Spinal cord layer 5 L2	ipsi	SCL5L2	-0.5
Spinal cord layer 3 L2	ipsi	SCL3L2	-0.5
Spinal cord layer 4 L2	ipsi	SCL4L2	-0.5
Area X L3	ipsi	SCL10L3	-0.5
Dorsal horn L3	ipsi	DHL3	-0.5
Spinal cord layer 5 L3	ipsi	SCL5L3	-0.5
Spinal cord layer 3 L3	ipsi	SCL3L3	-0.5
Spinal cord layer 4 L3	ipsi	SCL4L3	-0.5
Area X L4	ipsi	SCL10L4	-0.5
Dorsal horn L4	ipsi	DHL4	-0.5
Spinal cord layer 5 L4	ipsi	SCL5L4	-0.5
Spinal cord layer 3 L4	ipsi	SCL3L4	-0.5
Spinal cord layer 4 L4	ipsi	SCL4L4	-0.5
Area X L5	ipsi	SCL10L5	-0.5
Dorsal horn L5	ipsi	DHL5	-0.5
Spinal cord layer 5 L5	ipsi	SCL5L5	-0.5
Spinal cord layer 3 L5	ipsi	SCL3L5	-0.5
Spinal cord layer 4 L5	ipsi	SCL4L5	-0.5
Area X L6	ipsi	SCL10L6	-0.5
Dorsal horn L6	ipsi	DHL6	-0.5
Spinal cord layer 5 L6	ipsi	SCL5L6	-0.5
Spinal cord layer 3 L6	ipsi	SCL3L6	-0.5
Spinal cord layer 4 L6	ipsi	SCL4L6	-0.5
Area X S1	ipsi	SCL10S1	-0.5
Dorsal horn S1	ipsi	DHS1	-0.5
Spinal cord layer 5 S1	ipsi	SCL5S1	-0.5
Spinal cord layer 3 S1	ipsi	SCL3S1	-0.5
Spinal cord layer 4 S1	ipsi	SCL4S1	-0.5
Area X S2	ipsi	SCL10S2	-0.5
Dorsal horn S2	ipsi	DHS2	-0.5
Spinal cord layer 5 S2	ipsi	SCL5S2	-0.5
Spinal cord layer 3 S2	ipsi	SCL3S2	-0.5
Spinal cord layer 4 S2	ipsi	SCL4S2	-0.5
Area X S3	ipsi	SCL10S3	-0.5
Dorsal horn S3	ipsi	DHS3	-0.5
Spinal cord layer 5 S3	ipsi	SCL5S3	-0.5
Spinal cord layer 3 S3	ipsi	SCL3S3	-0.5
Spinal cord layer 4 S3	ipsi	SCL4S3	-0.5
Area X S4	ipsi	SCL10S4	-0.5
Dorsal horn S4	ipsi	DHS4	-0.5
Spinal cord layer 5 S4	ipsi	SCL5S4	-0.5
Spinal cord layer 3 S4	ipsi	SCL3S4	-0.5
Spinal cord layer 4 S4	ipsi	SCL4S4	-0.5
Area X Co1	ipsi	SCL10Co1	-0.5
Dorsal horn Co1	ipsi	DHCo1	-0.5
Spinal cord layer 5 Co1	ipsi	SCL5Co1	-0.5
Spinal cord layer 3 Co1	ipsi	SCL3Co1	-0.5
Spinal cord layer 4 Co1	ipsi	SCL4Co1	-0.5
Area X Co2	ipsi	SCL10Co2	-0.5
Dorsal horn Co2	ipsi	DHCo2	-0.5
Spinal cord layer 5 Co2	ipsi	SCL5Co2	-0.5
Spinal cord layer 3 Co2	ipsi	SCL3Co2	-0.5
Spinal cord layer 4 Co2	ipsi	SCL4Co2	-0.5
Area X Co3	ipsi	SCL10Co3	-0.5
Dorsal horn Co3	ipsi	DHCo3	-0.5
Spinal cord layer 5 Co3	ipsi	SCL5Co3	-0.5
Spinal cord layer 3 Co3	ipsi	SCL3Co3	-0.5
Spinal cord layer 4 Co3	ipsi	SCL4Co3	-0.5
Interposed cerebellar nuclei	contra	ICN	1
Lateral cerebellar nucleus	contra	CERL	1
Central part of jaw motor area	contra	CJMCx	1
Hindpaw skin	ipsi	OrgHPS	-0.5
Hindpaw skin	contra	OrgHPS	-0.5

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong