University of Rostock

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Rat connectome



Spinal cord layer 6 L5 left


Abbreviation
SCL6L5
Color       
Superior regionsDeep dorsal horn L5

SynonymsAbbr.Language
Spinal cord layer 6 L5SCL6L5Eng

SubregionsSide
Spinal cord layer 6 lateral part L5left
Spinal cord layer 6 medial part L5left
Spinal cord layer 6 L5 mediolateral extentleft

Output to

NameSideAbbr.WeightDetails
Dorsal periaqueductal grayipsiDPAG1
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG2
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus11
Simple lobuleipsiSim1
Anterior lobeipsiAnL2
Paravermal region of anterior lobeipsiPVAnL1
Pontine nucleiipsiPn-0.5
Pontine nuclei caudal partipsiBPNc-0.5
Magnocellular reticular nucleusipsiNRMC-0.5
Ventral part of the medial reticular formationipsiRFmV-0.5
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleus internal partipsiLPBI3
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Caudal bulbar reticular formationipsiCBRF-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus lateral partipsiLRtL1
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Medullary reticular nucleusipsiMdD-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Parvicellular reticular nucleusipsiPCRt-0.5
Ambiguus nucleusipsiAmb0.5
Spinal vestibular nucleusipsiSpVe-0.5
Nucleus of the solitary tractipsiSol0
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Rostral ventrolateral medullaipsiRVLM1
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu-0.5
GracileipsiGra-0.5
Gracile nucleus principal partipsiGr-0.5
Inferior olive dorsal nucleus rostral partipsiIODR-0.5
HypothalamusipsiHYPO1
Lateral hypothalamic areaipsiLH1
Medial division of the hypothalamusipsiMdH1
Ventrobasal complexipsiVB1
Lateral thalamic nuclear groupipsiLTNG1
Reticular thalamic nucleus lateral partipsiRtL0
Lateral funiculusipsilf-2
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Ventral horn C1ipsiVHC11
Cervical segment 2ipsiCS23
Ventral horn C2ipsiVHC21
Cervical segment 3ipsiCS33
Ventral horn C3ipsiVHC31
Cervical segment 4ipsiCS43
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Cervical segment 7ipsiCS73
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Spinal cord border between layer 10 and layer 7 L3ipsiSCLb10L7L3-0.5
Interneuron groups of layer 9 L3ipsiiGL9L3-0.5
Motoneuron groups of layer 9 L3ipsiMGL9L3-0.5
Spinal cord layer 9 L3ipsiSCL9L33
Lumbar segment 4ipsiL43
Spinal cord border between layer 10 and layer 7 L4ipsiSCLb10L7L4-0.5
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Lumbar segment 5ipsiL53
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL63
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa13
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Coccygeal segment 1ipsiCo13
Coccygeal segment 2ipsiCo23
Nucleus of DarkschewitschcontraDk-0.5
Periaqueductal graycontraPAG-0.5
Dorsal periaqueductal graycontraDPAG3
Lateral periaqueductal graycontraLPAG3
Ventrolateral periaqueductal graycontraVLPAG3
Medial pontine nucleuscontraMPoN2
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Medial part of the peduncular pontine nucleuscontraPPNM2
Edinger Westphal nucleuscontraEW-0.5
Ansiform lobule crus 1contraCrus11
Simple lobulecontraSim1
Paravermal region of anterior lobecontraPVAnL1
Central part of the peduncular part of the pontine nucleuscontraPePoC1
Medial ventral pontine regioncontraBPNvM2
Pontine nuclei dorsal partcontraDBPn1
Central part of the ventral part of the pontine nucleuscontraBPNvC1
Magnocellular reticular nucleuscontraNRMC-0.5
Ventral part of the medial reticular formationcontraRFmV-0.5
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB2
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Gigantocellular reticular nucleuscontraGi-0.5
Lateral reticular nucleuscontraLRt1
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleuscontraMdD-0.5
Medullary reticular nucleus dorsal partcontraMdDd0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM1
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu-0.5
HypothalamuscontraHYPO3
Lateral hypothalamic areacontraLH1
Medial division of the hypothalamuscontraMdH1
Centrolateral thalamic nucleuscontraCL-0.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo2
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Submedius thalamic nucleuscontraSub-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Ventrobasal complex anterior partcontraVBa-0.5
Intralaminar nuclei lateral partcontraILNL-0.5
Posterior intralaminar thalamic nucleuscontraPIL-0.5
Lateral thalamic nuclear groupcontraLTNG3
Lateral posterior thalamic nucleuscontraLP-0.5
Posterior groupcontraPTG-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Accumbens nucleuscontraAc3
Septal regioncontraSER2
Cervical segment 1contraCS11
Ventral horn C1contraVHC11
Cervical segment 2contraCS21
Ventral horn C2contraVHC21
Cervical segment 3contraCS31
Ventral horn C3contraVHC31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Lumbar segment 2contraL21
Lumbar segment 3contraL31
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Lumbar segment 6contraL61
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa33
Sacral segment 4contraSa43
Coccygeal segment 1contraCo13
Coccygeal segment 2contraCo23
Sciatic nerveipsisci3
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Tibialis anterior muscleipsiMuscTA-0.5
Soleus muscleipsiMuscSo-0.5
Bulbospongiosus muscleipsiMuscbsp2
Ischiocavernosus muscleipsiMuscicav-10
Bulbospongiosus musclecontraMuscbsp2

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca1
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg3
Caudal ventrolateral medullaipsiCVLM-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH1
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Somatomotoric regions layer 5ipsiSMRL51
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL21
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Dorsal root ganglion L3ipsiDRGL31
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL43
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL53
Dorsal root ganglion L6ipsiDRGL61
Red nucleuscontraR0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
A5 noradrenaline cells caudal partcontraA5C1
A5 noradrenaline cells rostral partcontraA5R1
Locus coeruleuscontraLC0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Medial reticular formationcontraRFm-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus alpha partcontraGiA3
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Gigantocellular reticular nucleus ventral partcontraGiV3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm2
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Somatomotoric regions layer 5contraSMRL51
Secondary visual cortexcontraV20.5
Dorsal root ganglion L5contraDRGL52
Femoral nerveipsifem3
Peronal nerveipsiperonal2
Sural nerveipsisural-0.5
Muscle branch of femoral nerveipsifemm-0.5
Hamstring nerveipsihamstri3
Sciatic nerveipsisci-0.5
Gastrocnemius nerveipsigastrocn-0.5
Superior gluteal nerveipsisgluteal2
Obturator nerveipsiobturat1
Soleus muscleipsiMuscSo-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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