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Rat connectome



Coccygeal segment 1 left


Abbreviation
Co1
Color       
Superior regionsCoccygeal segments

SynonymsAbbr.Language
Coccygeal segment 1Co1Eng

SubregionsSide
Dorsal nucleus Co1left
Extra spinal segmental structures Co1left
Intermediolateral cell column Co1left
Intermediomedial cell column Co1left
Lateral cervical nucleus Co1left
Lateral spinal nucleus Co1left
Sacral dorsal commissural nucleus Co1left
Spinal cord layers Co1left
Reticulated region of coccygeal segment 1left

Output to

NameSideAbbr.WeightDetails
Cerebellar lobule 2ipsiCERL2-0.5
Cerebellar lobule 3ipsiCERL3-0.5
Cerebellar lobule 1ipsiCERL1-0.5
Cerebellar lobule 4ipsiCERL4-0.5
Cerebellar lobule 5ipsiCERL5-0.5
Cerebellar lobule 8ipsiCERL8-0.5
Dorsolateral humpipsiCERcndl-0.5
Anterior interposed nucleusipsiAIN1
Anterior interposed nucleus dorsomedial partipsiAINDM-0.5
Anterior interposed nucleus medial partipsiAINM-0.5
Anterior interposed nucleus rostral partipsiAINR0
Anterior interposed nucleus rostroventral partipsiAINRV-0.5
Anterior interposed nucleus ventral partipsiAINV1
Posterior interposed nucleusipsiCERpin1
Posterior interposed nucleus medial partipsiCERmpin0.5
Medial cerebellar nucleusipsiMed-0.5
Medial cerebellar nucleus caudalmedial partipsiMedCM-0.5
Ventral part of the caudomedial subdivision of the medial cerebellar nucleusipsiMedCMV0.5
Medial cerebellar nucleus lateral partipsiMedL1
Medial cerebellar nucleus middle subdivisionipsiMMCM1
Medial cerebellar nucleus ventromedial partipsiMedVM-0.5
Dorsolateral protuberanceipsiDLPr0
Inferior cerebellar peduncleipsiicp-2
Superior cerebellar peduncleipsisucep-2
Centrolateral thalamic nucleusipsiCL-0.5
Ventrobasal complexipsiVB-0.5
Posterior groupipsiPTG-0.5
Zona incertaipsiZI1
Area X C1ipsiSCL10C1-0.5
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Spinal cord layer 6 C1ipsiSCL6C1-0.5
Spinal cord layer 4 C1ipsiSCL4C1-0.5
Spinal cord layer 7 C1ipsiSCL7C1-0.5
Area X C2ipsiSCL10C2-0.5
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Spinal cord layer 6 C2ipsiSCL6C2-0.5
Spinal cord layer 4 C2ipsiSCL4C2-0.5
Spinal cord layer 7 C2ipsiSCL7C2-0.5
Area X C3ipsiSCL10C3-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 6 C3ipsiSCL6C3-0.5
Spinal cord layer 4 C3ipsiSCL4C3-0.5
Spinal cord layer 7 C3ipsiSCL7C3-0.5
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 6 C4ipsiSCL6C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 6 C5ipsiSCL6C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Medial part of the intermediate cerebellar cortexcontraCERCimM3
Cerebellar lobule 2contraCERL2-0.5
Cerebellar lobule 3contraCERL3-0.5
Cerebellar lobule 1contraCERL1-0.5
Cerebellar lobule 4contraCERL4-0.5
Cerebellar lobule 5contraCERL5-0.5
Cerebellar lobule 8contraCERL8-0.5
Lateral vermiscontraLVERM3
Midline cerebellar vermiscontraVERMM1
Dorsolateral humpcontraCERcndl-0.5
Anterior interposed nucleuscontraAIN3
Anterior interposed nucleus dorsomedial partcontraAINDM-0.5
Anterior interposed nucleus medial partcontraAINM-0.5
Anterior interposed nucleus rostral partcontraAINR0
Anterior interposed nucleus rostromedial partcontraAINRM1
Anterior interposed nucleus rostroventral partcontraAINRV-0.5
Anterior interposed nucleus ventral partcontraAINV3
Posterior interposed nucleuscontraCERpin1
Posterior interposed nucleus caudal partcontraCERpinC1
Posterior interposed nucleus caudomedial partcontraCERpinCM3
Posterior interposed nucleus medial partcontraCERmpin0.5
Posterior interposed nucleus rostral partcontraCERpinR1
Medial cerebellar nucleuscontraMed-0.5
Medial cerebellar nucleus caudalmedial partcontraMedCM1
Ventral part of the caudomedial subdivision of the medial cerebellar nucleuscontraMedCMV1
Medial cerebellar nucleus lateral partcontraMedL1
Medial cerebellar nucleus middle subdivisioncontraMMCM2
Medial cerebellar nucleus ventromedial partcontraMedVM-0.5
Dorsolateral protuberancecontraDLPr0
Inferior cerebellar pedunclecontraicp-2
Superior cerebellar pedunclecontrasucep-2
Anterior group of the dorsal thalamuscontraATN1
Central medial thalamic nucleuscontraCM1
Centrolateral thalamic nucleuscontraCL1
Paracentral thalamic nucleuscontraPC1
Parafascicular thalamic nucleuscontraPF1
Rhomboid thalamic nucleuscontraRh1
Posterior thalamic nuclear groupcontraPo1
Mediodorsal thalamic nucleuscontraMD1
Submedius thalamic nucleuscontraSub1
Paratenial thalamic nucleuscontraPT1
Paraventricular thalamic nucleuscontraPV1
Reuniens thalamic nucleuscontraRe1
Ventrobasal complexcontraVB1
Laterodorsal thalamic nucleuscontraLD1
Posterior groupcontraPTG-0.5
Zona incertacontraZI1
HabenulacontraHAB1
Lateral geniculate complexcontraLG1
Medial geniculate nucleuscontraMG1
Area X C1contraSCL10C1-0.5
Spinal cord layer 5 C1contraSCL5C1-0.5
Spinal cord layer 6 C1contraSCL6C1-0.5
Spinal cord layer 4 C1contraSCL4C1-0.5
Spinal cord layer 7 C1contraSCL7C1-0.5
Area X C2contraSCL10C2-0.5
Spinal cord layer 5 C2contraSCL5C2-0.5
Spinal cord layer 6 C2contraSCL6C2-0.5
Spinal cord layer 4 C2contraSCL4C2-0.5
Spinal cord layer 7 C2contraSCL7C2-0.5
Area X C3contraSCL10C3-0.5
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 6 C3contraSCL6C3-0.5
Spinal cord layer 4 C3contraSCL4C3-0.5
Spinal cord layer 7 C3contraSCL7C3-0.5
Area X C4contraSCL10C4-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 6 C4contraSCL6C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Area X C5contraSCL10C5-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 6 C5contraSCL6C5-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Area X C6contraSCL10C6-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 6 C6contraSCL6C6-0.5
Spinal cord layer 4 C6contraSCL4C6-0.5
Spinal cord layer 7 C6contraSCL7C6-0.5
Area X C7contraSCL10C7-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 6 C7contraSCL6C7-0.5
Spinal cord layer 4 C7contraSCL4C7-0.5
Spinal cord layer 7 C7contraSCL7C7-0.5
Area X C8contraSCL10C8-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 6 C8contraSCL6C8-0.5
Spinal cord layer 4 C8contraSCL4C8-0.5
Spinal cord layer 7 C8contraSCL7C8-0.5
Adductor caudae dorsalis muscleipsiMuscAdCaDo-0.5
Midline flexor muscles located within ventral portion of tailipsiMuscTailf-0.5

Input from

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschipsiDk1
Periaqueductal grayipsiPAG1
Red nucleusipsiR3
Red nucleus magnocellular partipsiRMC3
Edinger Westphal nucleusipsiEW1
Cerebellar nucleiipsiDCeN0
Locus coeruleusipsiLC3
Paramedian reticular nucleusipsiPMn-0.5
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC-0.5
Cuneiforme nucleusipsiCnF0.5
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt-0.5
Subnucleus reticularis dorsalisipsiSRD-0.5
Medial subnucleus reticularis ventralis ventral partipsiMSRVv-0.5
Subcoeruleus nucleusipsiSubC1
Mesencephalic trigeminal nucleusipsiMe5-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Medial vestibular nucleusipsiMVe0
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tractipsiSol1
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa1
Cuneate nucleus ventromedial areaipsiCuVM3
GracileipsiGra1
Nucleus of RolleripsiRo-0.5
Lateral hypothalamic areaipsiLH1
Posterior hypothalamic areaipsiPHA-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Paracommissural nucleus of the posterior commissureipsiPaC1
Lateral spinal nucleusipsiMESLn-0.5
Area X C3ipsiSCL10C3-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 6 C3ipsiSCL6C3-0.5
Spinal cord layer 7 C3ipsiSCL7C3-0.5
Spinal cord layer 8 C3ipsiSCL8C3-0.5
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 6 C4ipsiSCL6C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 6 C5ipsiSCL6C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 8 C7ipsiSCL8C7-0.5
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Spinal cord layer 8 C8ipsiSCL8C8-0.5
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-0.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Area X T5ipsiSCL10T5-0.5
Spinal cord layer 3 T5ipsiSCL3T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Spinal cord layer 7 T5ipsiSCL7T5-0.5
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 3 T6ipsiSCL3T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 7 T6ipsiSCL7T6-0.5
Area X T7ipsiSCL10T7-0.5
Spinal cord layer 3 T7ipsiSCL3T7-0.5
Spinal cord layer 4 T7ipsiSCL4T7-0.5
Spinal cord layer 7 T7ipsiSCL7T7-0.5
Area X L2ipsiSCL10L23
Spinal cord layer 5 L2ipsiSCL5L23
Spinal cord layer 6 L2ipsiSCL6L23
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 7 L2ipsiSCL7L23
Spinal cord layer 8 L2ipsiSCL8L23
Area X L3ipsiSCL10L33
Spinal cord layer 5 L3ipsiSCL5L33
Spinal cord layer 6 L3ipsiSCL6L33
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 7 L3ipsiSCL7L33
Spinal cord layer 8 L3ipsiSCL8L33
Area X L4ipsiSCL10L43
Spinal cord layer 5 L4ipsiSCL5L43
Spinal cord layer 6 L4ipsiSCL6L43
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 7 L4ipsiSCL7L43
Spinal cord layer 8 L4ipsiSCL8L43
Area X L5ipsiSCL10L53
Spinal cord layer 5 L5ipsiSCL5L53
Spinal cord layer 6 L5ipsiSCL6L53
Spinal cord layer 3 L5ipsiSCL3L53
Spinal cord layer 4 L5ipsiSCL4L53
Spinal cord layer 7 L5ipsiSCL7L53
Spinal cord layer 8 L5ipsiSCL8L53
Area X L6ipsiSCL10L63
Spinal cord layer 5 L6ipsiSCL5L63
Spinal cord layer 6 L6ipsiSCL6L63
Spinal cord layer 3 L6ipsiSCL3L63
Spinal cord layer 4 L6ipsiSCL4L63
Spinal cord layer 7 L6ipsiSCL7L63
Spinal cord layer 8 L6ipsiSCL8L63
Nucleus of DarkschewitschcontraDk0.5
Edinger Westphal nucleuscontraEW0.5
Pontine reticular nucleus ventral partcontraPnV0.5
Cuneiforme nucleuscontraCnF0.5
Subcoeruleus nucleuscontraSubC0.5
Lateral hypothalamic areacontraLH0.5
Lateral agranular prefrontal cortex layer 5contraAGlL5-0.5
Paracommissural nucleus of the posterior commissurecontraPaC0.5
Lateral spinal nucleuscontraMESLn-0.5
Area X C3contraSCL10C3-0.5
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 6 C3contraSCL6C3-0.5
Spinal cord layer 7 C3contraSCL7C3-0.5
Spinal cord layer 8 C3contraSCL8C3-0.5
Area X C4contraSCL10C4-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 6 C4contraSCL6C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 8 C4contraSCL8C4-0.5
Area X C5contraSCL10C5-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 6 C5contraSCL6C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layer 8 C5contraSCL8C5-0.5
Area X C6contraSCL10C6-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 6 C6contraSCL6C6-0.5
Spinal cord layer 7 C6contraSCL7C6-0.5
Spinal cord layer 8 C6contraSCL8C6-0.5
Area X C7contraSCL10C7-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 6 C7contraSCL6C7-0.5
Spinal cord layer 7 C7contraSCL7C7-0.5
Spinal cord layer 8 C7contraSCL8C7-0.5
Area X C8contraSCL10C8-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 6 C8contraSCL6C8-0.5
Spinal cord layer 7 C8contraSCL7C8-0.5
Spinal cord layer 8 C8contraSCL8C8-0.5
Area X T1contraSCL10T1-0.5
Spinal cord layer 5 T1contraSCL5T1-0.5
Spinal cord layer 6 T1contraSCL6T1-0.5
Spinal cord layer 7 T1contraSCL7T1-0.5
Spinal cord layer 8 T1contraSCL8T1-0.5
Area X T4contraSCL10T4-0.5
Spinal cord layer 3 T4contraSCL3T4-0.5
Spinal cord layer 4 T4contraSCL4T4-0.5
Spinal cord layer 7 T4contraSCL7T4-0.5
Area X T5contraSCL10T5-0.5
Spinal cord layer 3 T5contraSCL3T5-0.5
Spinal cord layer 4 T5contraSCL4T5-0.5
Spinal cord layer 7 T5contraSCL7T5-0.5
Area X T6contraSCL10T6-0.5
Spinal cord layer 3 T6contraSCL3T6-0.5
Spinal cord layer 4 T6contraSCL4T6-0.5
Spinal cord layer 7 T6contraSCL7T6-0.5
Area X T7contraSCL10T7-0.5
Spinal cord layer 3 T7contraSCL3T7-0.5
Spinal cord layer 4 T7contraSCL4T7-0.5
Spinal cord layer 7 T7contraSCL7T7-0.5
Area X L2contraSCL10L23
Spinal cord layer 5 L2contraSCL5L23
Spinal cord layer 6 L2contraSCL6L23
Spinal cord layer 3 L2contraSCL3L23
Spinal cord layer 4 L2contraSCL4L23
Spinal cord layer 7 L2contraSCL7L23
Spinal cord layer 8 L2contraSCL8L23
Area X L3contraSCL10L33
Spinal cord layer 5 L3contraSCL5L33
Spinal cord layer 6 L3contraSCL6L33
Spinal cord layer 3 L3contraSCL3L33
Spinal cord layer 4 L3contraSCL4L33
Spinal cord layer 7 L3contraSCL7L33
Spinal cord layer 8 L3contraSCL8L33
Area X L4contraSCL10L43
Spinal cord layer 5 L4contraSCL5L43
Spinal cord layer 6 L4contraSCL6L43
Spinal cord layer 3 L4contraSCL3L43
Spinal cord layer 4 L4contraSCL4L43
Spinal cord layer 7 L4contraSCL7L43
Spinal cord layer 8 L4contraSCL8L43
Area X L5contraSCL10L53
Spinal cord layer 5 L5contraSCL5L53
Spinal cord layer 6 L5contraSCL6L53
Spinal cord layer 3 L5contraSCL3L53
Spinal cord layer 4 L5contraSCL4L53
Spinal cord layer 7 L5contraSCL7L53
Spinal cord layer 8 L5contraSCL8L53
Area X L6contraSCL10L63
Spinal cord layer 5 L6contraSCL5L63
Spinal cord layer 6 L6contraSCL6L63
Spinal cord layer 3 L6contraSCL3L63
Spinal cord layer 4 L6contraSCL4L63
Spinal cord layer 7 L6contraSCL7L63
Spinal cord layer 8 L6contraSCL8L63

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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