University of Rostock

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Rat connectome



Pontine gray left


Abbreviation
PG
Color       
Superior regionsPrecerebellar nuclei

SynonymsAbbr.Language
Basilar gray substance  
Nuclei pontis  
Basal pontine nuclei  
Basal pontine gray  
Pontine gray matterPGEng
Pontine central gray matter Eng
Basal pontine nucleus  
Basilar pontine nucleusBPNEng
Pontine nucleus  
Pontine grayPGEng
Pontine central gray Eng

SubregionsSide
Dorsal peduncular region of the pontine grayleft
Dorsomedial region of the pontine grayleft
Medial pontine grayleft
Midline region of the pontine grayleft
Pontine gray caudal partleft
Pontine gray dorsolateral partleft
Pontine gray dorsoventral extendleft
Pontine gray properleft
Pontine gray rostral partleft
Pontine tegmental fieldleft
Ventral border of the pontine grayleft
Ventral pontine grayleft
Lateral part of the central pontine gray matterleft
Middle third of ponsleft
Mid-central regions of the pontine grayleft

Output to

NameSideAbbr.WeightDetails
Rostromedial tegmental nucleusipsiRMTg1
Ventral tegmental area A10ipsiVTA1
CerebellumipsiCERE-0.5
Paravermal area lobule 8ipsiCERCPAL83
Paramedian lobuleipsiPM3
C1-zoneipsiC1ZO1
Simple lobule C1 zoneipsiSimC13
Cerebellar lobule 7ipsiCERL74
Dorsolateral humpipsiCERcndl3
Central interposed cerebellar nuclei medial partipsiICNCeM0.5
Central interposed cerebellar nuclei lateral partipsiICNCeL0
Lateral part of interposed cerebellar nuclei rostral partipsiICNRoL0
Medial part of the interposed cerebellar nuclei rostral partipsiICNRM0.5
Lateral cerebellar nucleus parvicellular partipsiLatPC0.5
Lateral cerebellar nucleus dorsolateral magnocellular portionipsiCERLdl2
Medial cerebellar nucleus caudalmedial partipsiMedCM0
Medial cerebellar nucleus middle subdivisionipsiMMCM0
Dorsolateral protuberanceipsiDLPr0
PonsipsiP3
Pontine grayipsiPG3
Prepositus nucleusipsiPr1
Parvicellular reticular nucleusipsiPCRt-0.5
Ambiguus nucleusipsiAmb-0.5
Paraventricular hypothalamic nucleus anterior parvicellular subdivisionipsiaPavPo0.5
Zona incerta medial partipsiZIm0
Medial forebrain bundleipsimfb-2
Basolateral amygdaloid nucleusipsiBL-0.5
Basolateral amygdaloid nucleus ventral partipsiBLve-0.5
Posterior basolateral nucleusipsiBLP-0.5
Anterior basomedial nucleusipsiBMA-0.5
Posterior basomedial nucleusipsiBMP-0.5
Cerebral cortexipsiCEC-0.5
Caudal forelimb motor areaipsiCFMA2
Rostral forelimb motor areaipsiRFMA2
Primary visual cortexipsiV11
Cervical segment 7ipsiCS7-1
Paravermal area lobule 8contraCERCPAL84
Paramedian lobulecontraPM4
C1-zonecontraC1ZO3
Copula of the pyramis C1 e2+ zebrin zonecontraCopC1e2+-0.5
Copula of the pyramis C1 e1+ zebrin zonecontraCopC1e1+-0.5
Simple lobule C1 zonecontraSimC13
Cerebellar lobule 7contraCERL74
Dorsolateral humpcontraCERcndl4
Central interposed cerebellar nuclei medial partcontraICNCeM4
Central interposed cerebellar nuclei lateral partcontraICNCeL0.5
Lateral part of interposed cerebellar nuclei rostral partcontraICNRoL0.5
Medial part of the interposed cerebellar nuclei rostral partcontraICNRM4
Lateral cerebellar nucleus parvicellular partcontraLatPC4
Lateral cerebellar nucleus dorsolateral magnocellular portioncontraCERLdl4
Medial cerebellar nucleus caudalmedial partcontraMedCM0
Medial cerebellar nucleus middle subdivisioncontraMMCM0
Dorsolateral protuberancecontraDLPr0
Prepositus nucleuscontraPr1
Cervical segment 7contraCS7-1
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10

Input from

NameSideAbbr.WeightDetails
MesencephalonipsiMEC-0.5
Central gray mesencephalic part ventromedial partipsiCGMvm1
Dorsal terminal nucleus of the accessory optic tractipsiDT-0.5
Periaqueductal grayipsiPAG3
Superior colliculusipsiSC3
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC0
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA3
Parabrachial pigmented nucleusipsiPBP0
Paranigral nucleusipsiPN0
Retrorubral nucleusipsiRR-1
Cerebellar nucleiipsiDCeN1
Dorsolateral humpipsiCERcndl0
Deep cerebellar nucleiipsiDNC1
Interposed cerebellar nucleiipsiICN3
Anterior interposed nucleusipsiAIN0
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL3
Medial cerebellar nucleusipsiMed0
Locus coeruleusipsiLC-0.5
Pontine grayipsiPG3
Mesencephalic reticular formationipsiMRF2
Gigantocellular reticular nucleusipsiGi-0.5
Area postremaipsiAP3
Spinal vestibular nucleusipsiSpVe-1
Vestibular nucleiipsiVnc3
Nucleus of the solitary tract rostral partipsiSolro-2
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu-0.5
Cuneate nucleus caudal medial partipsiCucm-0.5
Olivary pretectal nucleusipsiOPT2
Dorsal paragigantocellular nucleusipsiDPGi-0.5
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area caudal partipsiLHc-0.5
Lateral hypothalamic area perifornical partipsiPFx1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA1
Mammillary bodyipsiCMAM-0.5
Lateral mammillary nucleusipsiLM-0.5
Medial mammillary nucleusipsiMMn0.5
ThalamusipsiT-0.5
Ventral part of the lateral geniculate complexipsiLGv1
Posterior thalamic nuclear groupipsiPo3
Lateral posterior thalamic nucleusipsiLP-1
Zona incertaipsiZI3
Nucleus of the optic tractipsiOT2
Medial habenular nucleusipsiMHb2
Pretectal regionipsiPRT3
Anterior pretectal nucleusipsiAPT2
Posterior pretectal nucleusipsiPPT3
Accessory optic systemipsiAOS-0.5
Lateral terminal nucleus of the accessory optic tractipsiLTeN2
Medial terminal nucleus of the accessory optic tractipsiMT3
Central amygdaloid nucleus lateral divisionipsiCeL1
Retrosplenial agranular cortexipsiRSA3
Infralimbic cortexipsiIL-0.5
NeocortexipsiNEOCX-0.5
Frontal cortex area 2ipsiFr2-0.5
Auditory regionsipsiAU-0.5
Frontal polar cortexipsiFP2
Caudal forelimb motor areaipsiCFMA2
Rostral forelimb motor areaipsiRFMA2
Lateral agranular prefrontal cortex layer 5ipsiAGlL5-0.5
Rostral part of lateral agranular prefrontal cortex layer 5ipsiAGlrL51
Central part of jaw motor areaipsiCJMCx2
Medial agranular prefrontal cortexipsiAGm2
Primary somatosensory cortexipsiS13
Posteromedial barrel subfield C2ipsiPMBSFC24
Posteromedial barrel subfield D1ipsiPMBSFD14
Posteromedial barrel subfield D2ipsiPMBSFD24
Posteromedial barrel subfield D5ipsiPMBSFD54
Secondary somatosensory cortexipsiS22
Primary visual cortexipsiV12
Lateral extrastriate cortexipsiVISxL2
Medial extrastriate cortexipsiVISM2
Intergeniculate leafipsiIGL1
Ventral lateral geniculate nucleusipsiVLG2
Ventral lateral geniculate nucleus dorsal partipsiVLGD-0.5
Ventral lateral geniculate nucleus medial partipsiVLGM-0.5
Olfactory tubercleipsiTuO3
Superior colliculuscontraSC3
Superior colliculus intermediate layerscontraSCi2
Visual tegmental relay zonecontraViTRZo2
Dorsolateral humpcontraCERcndl2
Interposed cerebellar nucleicontraICN2
Anterior interposed nucleuscontraAIN3
Posterior interposed nucleuscontraCERpin1
Lateral cerebellar nucleuscontraCERL2
Medial cerebellar nucleuscontraMed1
Cuneiforme nucleuscontraCnF-0.5
Area postremacontraAP3
Cuneate nucleuscontraCu-0.5
Lateral hypothalamic area caudal partcontraLHc-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0.5
Lateral mammillary nucleuscontraLM-0.5
Medial mammillary nucleuscontraMMn-0.5
Nucleus of the optic tractcontraOT-0.5
Pretectal regioncontraPRT-0.5
Accessory optic systemcontraAOS3
Medial terminal nucleus of the accessory optic tractcontraMT3
Ventral part of the medial terminal nucleus of the accessory optic tractcontraMTV3
Dorsal part of the medial terminal nucleus of the accessory optic tractcontraMTD3
Retrosplenial agranular cortex rostral partcontraRSAr1
Frontal cortex area 2contraFr2-0.5
Central part of jaw motor areacontraCJMCx1
Primary somatosensory cortex forelimb regioncontraS1FL0
Primary visual cortexcontraV1-0.5
Medial extrastriate cortexcontraVISM-0.5
Ventral lateral geniculate nucleuscontraVLG-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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