University of Rostock

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Rat connectome



Pineal gland right


Abbreviation
Pi
Color       
Superior regionsEpithalamus

SynonymsAbbr.Language
 PIN 
Glandula pinealis Lat
Epiphyse Ger
Corpus pineale Lat
Pineal complex Eng
Pineal glandPiEng
Pineal body Eng

SubregionsSide
Deep pineal glandright
Pineal stalkright
Superficial pineal glandright
Pineal gland rostral partright

Output to

NameSideAbbr.WeightDetails
Substantia nigra lateral partipsiSNL1
Trigeminal ganglionipsi5Gn-0.5
Pineal glandipsiPi-0.5
RetinaipsiRET-10

Input from

NameSideAbbr.WeightDetails
Trigeminal ganglioncontra5Gn1
Medial habenular nucleuscontraMHb3
Intercalated nucleus T1contraICLT11
Intermediolateral cell column T1contraIMLT1-0.5
Intermediolateral cell column pars principalis T1contraIMLPT12
Lateral funiculus of thoracal segment 1contraLfT11
Intercalated nucleus T2contraIClT21
Intermediolateral cell column T2contraIMLT2-0.5
Intermediolateral cell column pars principalis T2contraIMLPT22
Lateral funiculus of thoracal segment 2contraLfT21
Intercalated nucleus T3contraIClT31
Intermediolateral cell column T3contraIMLT3-0.5
Intermediolateral cell column pars principalis T3contraIMLPT32
Lateral funiculus of thoracal segment 3contraLfT31
Intercalated nucleus T4contraIClT41
Intermediolateral cell column T4contraIMLT4-0.5
Lateral funiculus of thoracal segment 4contraLfT41
Periaqueductal grayipsiPAG-0.5
Periaqueductal gray rostral partipsiPAGR4
Inferior colliculusipsiICOL-0.5
Superior colliculusipsiSC-0.5
A5 noradrenaline cellsipsiA54
Barringtons nucleusipsiBar3
Locus coeruleusipsiLC4
Nucleus incertus pars compactaipsiNIc1
Nucleus incertus pars dissipataipsiNId-0.5
Magnocellular reticular nucleus medial partipsiNRMCM3
Koelliker Fuse nucleusipsiKF3
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA4
Lateral reticular nucleusipsiLRt3
Medullary reticular nucleus dorsal partipsiMdDd2
Medullary reticular nucleus ventral partipsiMdV2
Parvicellular reticular nucleusipsiPCRt1
Ambiguus nucleusipsiAmb2
Area postremaipsiAP3
Trigeminal ganglionipsi5Gn3
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract commissural partipsiSolC3
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM3
Nucleus of the solitary tract rostral partipsiSolro1
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleus caudal partipsiDRC-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa4
A1 noradrenalin cells C1 adrenaline cellsipsiA1/C12
A1 noradrenergic cellsipsiA1-0.5
Lateral paragigantocellular nucleusipsiLPGi4
Superior salivatory nucleusipsiSuS1
Dorsal endopiriform nucleusipsiDEn3
Ventral endopiriform nucleusipsiVEn2
Diagonal band of BrocaipsiDBB1
Medial septal nucleusipsiMS1
Substantia innominataipsiSI2
Preoptic regionipsiPREO-0.5
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA2
Medial preoptic nucleusipsiMPO2
Median preoptic nucleusipsiMnPO3
Tuberomammillary nucleusipsiTuM-0.5
Tuberomammillary nucleus dorsomedial partipsiTBMdm3
Tuberomammillary nucleus ventrolateral partipsiTBMvl3
Vascular organ of the lamina terminalisipsiVOLT3
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area perifornical partipsiPFx0
Lateral hypothalamic area ventral partipsiLHAvp4
Lateral hypothalamic nucleusipsiLHN4
Lateral hypothalamic area intermediate partipsiLHim2
Lateral hypothalamic area anterodorsal subareaipsiLHad2
Lateral hypothalamic area anterolateral subareaipsiLHaL2
Anterior hypothalamic areaipsiAHA-0.5
Anteroventral preoptic nucleusipsiAnV2
Dorsal hypothalamic areaipsiDA4
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Dorsomedial hypothalamic nucleus diffuse partipsiDMH2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM0
Parastriatal nucleusipsiPS2
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleusipsiPH-0.5
Arcuate nucleusipsiArc2
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa4
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD4
Paraventricular nucleus medial parvocellular partipsiPaMep3
Suprachiasmatic nucleusipsiSCh-0.5
Suprachiasmatic nucleus dorsomedial partipsiSCnDM3
Suprachiasmatic nucleus ventral divisionipsiSChv-0.5
Suprachiasmatic nucleus ventrolateral partipsiSCnVL1
Perifornical nucleusipsiPeF4
Retrochiasmatic areaipsiRCh1
Anteromedial thalamic nucleusipsiAM2
Central medial thalamic nucleusipsiCM1
Rhomboid thalamic nucleusipsiRh1
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe1
Subfornical organipsiSFO2
Zona incertaipsiZI1
HabenulaipsiHAB-0.5
Medial habenular nucleusipsiMHb3
Pineal glandipsiPi-0.5
Stria medullaris of the thalamusipsism1
Amygdaloid complexipsiAC-0.5
Basomedial amygdaloid nucleusipsiBM3
Lateral amygdaloid nucleusipsiLA3
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD1
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV1
Bed nucleus of the stria terminalis posterior divisionipsiBSTP2
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr2
Central amygdaloid nucleusipsiCe2
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM-0.5
Nucleus of the lateral olfactory tractipsiLOT3
ClaustrumipsiCl2
Caudal striatumipsiCPuc-2
Ventral striatumipsiCPuv-2
Field CA1 of hippocampus ventral partipsiCA1v2
Field CA3 of hippocampus ventral partipsiCA3v2
Field CA3 of the dorsal hippocampusipsiCA3D2
SubiculumipsiS1
Entorhinal cortexipsiEnt2
Piriform cortexipsiPir3
Retrosplenial agranular cortexipsiRSA1
Cingulate cortexipsiCg1
Insular cortexipsiICX3
Motoric regionsipsiM2
Intergeniculate leafipsiIGL2
Olfactory systemipsiOSY-0.5
Lateral septal nucleusipsiLS1
Autonomic cell columnipsiMESauto4
Dorsal horn of spinal cordipsiDHMES4
Intermediolateral cell columnipsiIML4
Spinal cord lamina 7ipsiMESL7-0.5
Spinal cord lamina 5ipsiMESL5-0.5
Intercalated nucleus T1ipsiICLT11
Intermediolateral cell column T1ipsiIMLT1-0.5
Intermediolateral cell column pars principalis T1ipsiIMLPT13
Lateral funiculus of thoracal segment 1ipsiLfT11
Intercalated nucleus T2ipsiIClT21
Intermediolateral cell column T2ipsiIMLT2-0.5
Intermediolateral cell column pars principalis T2ipsiIMLPT23
Lateral funiculus of thoracal segment 2ipsiLfT21
Intercalated nucleus T3ipsiIClT31
Intermediolateral cell column T3ipsiIMLT3-0.5
Intermediolateral cell column pars principalis T3ipsiIMLPT33
Lateral funiculus of thoracal segment 3ipsiLfT31
Intercalated nucleus T4ipsiIClT41
Intermediolateral cell column T4ipsiIMLT4-0.5
Lateral funiculus of thoracal segment 4ipsiLfT41
Ventral horn of spinal cordipsiVHMES3
Intercalated spinal nucleusipsiMESicsn4
Superior cervical ganglioncontraAutoSCeG3
Rostral part of the superior cervical ganglioncontraAutoSCeGR3
Otic ganglioncontraAutoOG1
Sphenopalatine ganglioncontraAutoSPG1
Superior cervical ganglionipsiAutoSCeG4
Middle part of the superior cervical ganglionipsiAutoSCeGMi1.5
Caudal part of the superior cervical ganglionipsiAutoSCeGC1.5
Rostral part of the superior cervical ganglionipsiAutoSCeGR3
Rostral half of the superior cervical ganglionipsiAutoRhSCeG2
Rostral third of the superior cervical ganglionipsiAutoSCeGRt-0.5
Otic ganglionipsiAutoOG1
Sphenopalatine ganglionipsiAutoSPG2
Nervus conariiipsinco-2
Vitreous humor of eyeipsiOrgVHEye-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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