University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Pontomesencephalic gray left


Abbreviation
PoMG
Color       
Superior regionsPons

SynonymsAbbr.Language
Pontomesencephalic region Eng
Pontomesencephalic grayPoMGEng

SubregionsSide
Pontomesencephalic gray lateral edgeleft

Output to

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Red nucleusipsiR-2
Superior colliculusipsiSC-0.5
Superior colliculus deep white layeripsiSAP-0.5
Superior colliculus intermediate layersipsiSCi-0.5
Intermediate white layer of the superior colliculusipsiInWh-0.5
Superior colliculus intermediate layers lower part of the inferior portionipsiSCiLi-2
Deep white layer of the superior colliculusipsiDpWh-0.5
Tegmental areaipsiTGA-0.5
Central tegmental tractipsictg0.5
Microcellular tegmental nucleusipsiMiTg-0.5
Substantia nigra A9ipsiSN2.5
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part upper borderipsiSNCub-0.5
Ventral tegmental area A10ipsiVTA1
Lateral tegmental areaipsiLTGA-0.5
Upper part of the laterodorsal tegmental nucleusipsiLDTgU-0.5
Dorsal tegmental nucleusipsiDTg-0.5
Pedunculopontine tegmental nucleus medial partipsiPPTgM-0.5
Anterolateral curve of the superior cerebellar peduncle brachium conjunctivumipsiaLscp-0.5
Barringtons nucleusipsiBar-0.5
Locus coeruleusipsiLC-0.5
Parabrachial nucleus dorsal partipsiPBD-0.5
Parabrachial nucleus dorsolateral partipsiPBDL-0.5
Parabrachial nucleus ventral partipsiPBV-0.5
Endopiriform systemipsiEnN-0.5
Basal nucleus MeynertipsiB-0.5
Substantia innominataipsiSI-0.5
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu3
Medial division of the hypothalamusipsiMdH3
Periventricular zoneipsiPVZ3
Supraoptic decussationipsisox-0.5
Ventral hypothalamic regionipsiVHR-0.5
A8 dopamine cells retrorubral groupipsiRRF0.5
Parafascicular thalamic nucleusipsiPF-0.5
Lateral group of the dorsal thalamusipsiLAT-0.5
Mediodorsal thalamic nucleusipsiMD-0.5
Mediodorsal thalamic nucleus lateral partipsiMDL-0.5
Midline group of the dorsal thalamusipsiMTN0
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Intralaminar nucleiipsiILN-0.5
Centrolateral intralaminar nucleusipsiCLILN-0.5
Lateral posterior thalamic nucleusipsiLP-0.5
Posterior groupipsiPTG0.5
Ventral thalamusipsiVNT-0.5
Reticular thalamic nucleus caudal partipsiRtc-0.5
Caudal part of the caudorostral part of the reticular thalamic nucleusipsiRtccr-0.5
Zona incertaipsiZI-0.5
Zona incerta lateral partipsiZIL-0.5
Zona incerta rostromedial partipsiZIrm3
Lateral habenular nucleusipsiLHb-0.5
Anterior pretectal nucleusipsiAPT-0.5
Anterior pretectal nucleus lateral partipsiAPTL-0.5
Anterior pretectal nucleus anterior partipsiAPTA-0.5
Anterior pretectal nucleus posterior partipsiAPTP-0.5
Accessory optic tractipsiaopt-0.5
Lateral lemniscusipsill-0.5
Medial forebrain bundleipsimfb-2
Medial lemniscusipsiml2.5
Ventral tegmental pathwayipsivtp-0.5
Lateral terminal nucleus of the accessory optic tractipsiLTeN-0.5
Subthalamic nucleusipsiSTh-0.5
Intermediate magnocellular nucleus of the posterior commissureipsiiMCPC-0.5
Dorsal portion of the posterior commissureipsipcD-2
Intracommissural nucleus of the posterior commissureipsiicPC-0.5
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Dorsal geniculate nucleus lateral part posteromedial borderipsiDLGlpm-0.5
Ventral lateral geniculate nucleusipsiVLG-0.5
Ventral lateral geniculate nucleus lateral partipsiVLGl-0.5
Ventral lateral geniculate nucleus medial partipsiVLGM-0.5
Ventral lateral geniculate nucleus ventral portion of the medial partipsiVLGVM-0.5
Medial geniculate nucleusipsiMG-0.5
Superior colliculus deep white layercontraSAP-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Intermediate white layer of the superior colliculuscontraInWh-0.5
Deep white layer of the superior colliculuscontraDpWh-0.5
Reticular systemcontraRF-0.5
Basal nucleus MeynertcontraB-0.5
Substantia innominatacontraSI-0.5
Reticular thalamic nucleuscontraRt-0.5
Anterior pretectal nucleuscontraAPT-0.5
Intracommissural nucleus of the posterior commissurecontraicPC-0.5
Lateral geniculate complexcontraLG-0.5

Input from

NameSideAbbr.WeightDetails
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Parvicellular reticular nucleusipsiPCRt1
Gigantocellular reticular nucleus alpha partcontraGiA-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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