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Rat connectome



Spinal cord layer 2 C6 right


Abbreviation
SCL2C6
Color       
Superior regionsSuperficial dorsal horn C6

SynonymsAbbr.Language
Spinal cord layer 2 C6SCL2C6Eng

SubregionsSide
Spinal cord layer 2 inner part C6right
Spinal cord layer 2 outer part C6right

Output to

NameSideAbbr.WeightDetails
MesencephaloncontraMEC0.5
Periaqueductal graycontraPAG3
Dorsolateral periaqueductal graycontraDLPAG-0.5
Lateral periaqueductal graycontraLPAG1
Ventrolateral periaqueductal graycontraVLPAG2
Cerebellar lobule 4contraCERL40
Cerebellar lobule 5contraCERL51.5
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB-0.5
Koelliker Fuse nucleuscontraKF0.5
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus crescent partcontraLPBCr2
Lateral parabrachial nucleus dorsolateral partcontraLPBdL3
Lateral parabrachial nucleus external part inner portioncontraLPBEip1
Lateral parabrachial nucleus external part outer portioncontraLPBEop2
Lateral parabrachial nucleus internal partcontraLPBI0
Lateral parabrachial nucleus lateral partcontraLPBL1
Lateral parabrachial nucleus superior partcontraLPBS2
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus medialcontraPBnMe0
Medial parabrachial nucleus external partcontraMPBE1
Parabrachial nucleus superior lateralcontraPBSL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Subnucleus reticularis dorsaliscontraSRD0.5
Medullary reticular nucleus dorsal partcontraMdDd2
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract commissural partcontraSolC1
Nucleus of the solitary tract dorsomedial partcontraSolDM0.5
Nucleus of the solitary tract intermediate partcontraSolIM0
Nucleus of the solitary tract medial partcontraSolM0.5
Ventral lateral medulla oblongatacontraMVL-2
Caudal ventrolateral medullacontraCVLM3
Caudal ventrolateral medulla lateral partcontraCVLMl2
Rostral ventrolateral medullacontraRVLM2
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Lateral hypothalamic areacontraLH4
Medial division of the hypothalamuscontraMdH4
Posterior hypothalamic areacontraPHA1
ThalamuscontraT3
Centrolateral thalamic nucleuscontraCL-0.5
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Ventral posterior thalamic complexcontraVPT3
Ventrobasal complexcontraVB0.5
Ventral posterolateral thalamic nucleuscontraVPL0.5
Ventral posteromedial thalamic nucleuscontraVPM0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Posterior groupcontraPTG-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS10
Cervical segment 2contraCS20
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 7contraCS7-1
Cervical segment 8contraCS80
Thoracal segment 2contraT20
Spinal cord layers T2contraSCLT22
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 5contraT50
Thoracal segment 6contraT60
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 11contraT110
Thoracal segment 12contraT120
Thoracal segment 13contraT130
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 4contraL40
Lumbar segment 5contraL50
Lumbar segment 6contraL60
Sacral segment 2contraSa20
Sacral segment 3contraSa30
Sacral segment 4contraSa40
Periaqueductal grayipsiPAG0.5
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Lateral periaqueductal grayipsiLPAG1.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Superior colliculus deep layersipsiSCd1.5
Cerebellar lobule 4ipsiCERL40
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Pontine medullary junctionipsiPMJ-0.5
Dorsal reticular formationipsiDRF-0.5
Parabrachial nucleusipsiPB2
Lateral parabrachial nucleusipsiLPB0.5
Lateral parabrachial nucleus external partipsiLPBE1
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Lateral reticular nucleusipsiLRt4
Lateral reticular nucleus lateral partipsiLRtL3
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Spinal trigeminal nucleus caudal partipsiSp5C1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract commissural partipsiSolC2
Nucleus of the solitary tract dorsomedial partipsiSolDM2
Nucleus of the solitary tract intermediate partipsiSolIM0
Nucleus of the solitary tract medial partipsiSolM2
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM3
Caudal ventrolateral medulla lateral partipsiCVLMl3
Rostral ventrolateral medullaipsiRVLM4
Caudal dorsal reticular medulla oblongataipsiCDRMO-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Cuneate nucleusipsiCu4
Lateral hypothalamic areaipsiLH3
Medial division of the hypothalamusipsiMdH3
Posterior hypothalamic areaipsiPHA1
Paraventricular hypothalamic nucleusipsiPa0.5
ThalamusipsiT0.5
Centrolateral thalamic nucleusipsiCL-0.5
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL0.5
Ventral posteromedial thalamic nucleusipsiVPM0.5
Posterior groupipsiPTG-0.5
Cuneate fasciculusipsicu-2
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Interneuron groups of layer 9 C8ipsiiGL9C8-0.5
Cervical segment 2ipsiCS21
Cervical segment 3ipsiCS31
Cervical segment 4ipsiCS41
Interneuron groups of layer 9 C4ipsiiGL9C4-0.5
Motoneuron groups of layer 9 C4ipsiMGL9C4-0.5
Cervical segment 5ipsiCS51
Motoneuron groups of layer 9 C5ipsiMGL9C5-0.5
Cervical segment 6ipsiCS61
Interneuron groups of layer 9 C5ipsiiGL9C5-0.5
Motoneuron groups of layer 9 C6ipsiMGL9C6-0.5
Cervical segment 7ipsiCS71
Interneuron groups of layer 9 C6ipsiiGL9C6-0.5
Motoneuron groups of layer 9 C7ipsiMGL9C7-0.5
Cervical segment 8ipsiCS81
Interneuron groups of layer 9 C7ipsiiGL9C7-0.5
Motoneuron groups of layer 9 C8ipsiMGL9C8-0.5
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
Median nerveipsimen3
Radial nerveipsirad-2
Ulnar nerveipsiuln3
Tibial nerveipsitibial3
Biceps femoris musclecontraMuscBF1
Biceps femoris muscleipsiMuscBF1

Input from

NameSideAbbr.WeightDetails
Pedunculopontine tegmental nucleuscontraPPTg3
A4 noradrenaline cellscontraA40
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA71
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Rostroventrolateral reticular nucleuscontraRVL-0.5
Cuneiforme nucleuscontraCnF-2
Medullary reticular nucleus dorsal partcontraMdDd3
Dorsal part of the medullary reticular nucleus dorsal partcontradMdDd1
Ventral part of the medullary reticular nucleus dorsal partcontravMdDd3
Medullary reticular nucleus ventral partcontraMdV3
Subcoeruleus nucleuscontraSubC1
C2 adrenaline cellscontraC20
Spinal trigeminal nucleus caudal partcontraSp5C0
Nucleus of the solitary tractcontraSol2
Nucleus of the solitary tract commissural partcontraSolC-0.5
Caudal ventrolateral medulla lateral partcontraCVLMl2
Lateral most portion of the ventrolateral medullacontraLMVL-0.5
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA21
Cuneate nucleuscontraCu0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm4
Paraventricular hypothalamic nucleuscontraPa1
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl-0.5
Primary somatosensory cortexcontraS13
Primary somatosensory cortex barrel fieldcontraS1BF1
Central grayipsiCG1
Red nucleusipsiR2.5
Red nucleus caudal partipsiRnCa3
Red nucleus rostral partipsiRnRo3
Ventrolateral tegmental areaipsiVLTg2
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1.5
A4 noradrenaline cellsipsiA40
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Magnocellular reticular nucleusipsiNRMC-0.5
Rostroventrolateral reticular nucleusipsiRVL1
Ventral reticular formationipsiVRF2
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Subnucleus reticularis dorsalis dorsal partipsiSRDD-0.5
Medullary reticular nucleus dorsal partipsiMdDd4
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd4
Ventral part of the medullary reticular nucleus dorsal partipsivMdDd4
Medullary reticular nucleus ventral partipsiMdV4
Subcoeruleus nucleusipsiSubC3
C2 adrenaline cellsipsiC20
Boetzinger complexipsiBo0
Spinal trigeminal nucleus caudal partipsiSp5C2
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract commissural partipsiSolC1
Raphe magnus nucleusipsiRMg3
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medulla lateral partipsiCVLMl3
Lateral part of the caudal ventrolateral medullaipsiLCVLM1
Lateral most portion of the ventrolateral medullaipsiLMVL-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA21
Cuneate nucleusipsiCu1
Cuneate nucleus dorsal partipsiCuD-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm4
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Lateral spinal nucleusipsiMESLn-0.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root C5ipsidrC5-0.5
Dorsal root ganglion C5ipsiDRGC5-0.5
Dorsal root ganglion C6ipsiDRGC6-0.5
Cervical segment 7ipsiCS71
Dorsal root ganglion C7ipsiDRGC7-0.5
Cervical segment 8ipsiCS81
Dorsal root ganglion C8ipsiDRGC8-0.5
Greater occipital nerveipsiPNSgo-0.5
Median nerveipsimen3
Superficial cutaneous part of the radial nerveipsiradsc2
Ulnar nerveipsiuln-0.5
Subcutaneous nipple region of the mammary gland M1contraOrgsMamM1-1
Forepaw digit 2ipsiOrgFLD21
Forepaw digit 3ipsiOrgFLD31
Forepaw digit 4ipsiOrgFLD41
Forelimb extensor digitorum communisipsiMuscFoEDC1
Subcutaneous nipple region of the mammary gland M1ipsiOrgsMamM13

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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