University of Rostock

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Rat connectome



Spinal cord layer 2 C1 left


Abbreviation
SCL2C1
Color       
Superior regionsSuperficial dorsal horn C1

SynonymsAbbr.Language
Spinal cord layer 2 C1SCL2C1Eng
Substantia gelatinosa C1  
Rexed lamina 2  
Substantia gelatinosa of rolando C1 Eng
Substantia gelatinosa Rolandii C1SGREng

SubregionsSide
Spinal cord layer 2 deeper part C1left
Spinal cord layer 2 inner part C1left
Spinal cord layer 2 outer part C1left

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG3
Lateral periaqueductal grayipsiLPAG3
Periaqueductal gray caudal partipsiPAGc3
Ventrolateral periaqueductal grayipsiVLPAG3
Superior colliculus deep layersipsiSCd1.5
Paravermis areaipsiCERCPA0.5
Vermal cerebellar cortexipsiVERMcx0.5
Pontine medullary junctionipsiPMJ-0.5
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleus caudal partipsiPNC1
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus external partipsiLPBE1
Lateral parabrachial nucleus lateral partipsiLPBL2
Parabrachial nucleus central lateral partipsiPBCeL3
Parabrachial nucleus dorsolateral partipsiPBDL3
Parabrachial nucleus external divison lateral partipsiPBeDL3
Parabrachial nucleus external divison medial partipsiPBeDM3
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL1
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL3
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Principal sensory trigeminal nucleusipsiPr5-2
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM1
Caudal dorsal reticular medulla oblongataipsiCDRMO-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Cuneate nucleusipsiCu3
Tuberomammillary nucleusipsiTuM2
Dorsomedial hypothalamic nucleusipsiDMHy2
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH3
Medial division of the hypothalamusipsiMdH3
Anterior hypothalamic areaipsiAHA2
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc2
Paraventricular hypothalamic nucleusipsiPa2
Periventricular hypothalamic nucleusipsiPe2
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus [Supraoptic region]ipsiSO2
Mammillary bodyipsiCMAM2
ThalamusipsiT0.5
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL0.5
Ventral posteromedial thalamic nucleusipsiVPM0.5
Central amygdaloid nucleusipsiCe0.5
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS11
Spinal cord layers C1ipsiSCLC1-2
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Cervical segment 2ipsiCS21
Cervical segment 3ipsiCS31
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Spinal cord layers T2ipsiSCLT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segmentsipsiLSeg-0.5
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG2
Periaqueductal gray caudal partcontraPAGc3
Ventrolateral periaqueductal graycontraVLPAG2
Central nucleus of the inferior colliculuscontraCIC3
External cortex of the inferior colliculuscontraECIC1
Superior colliculus intermediate layerscontraSCi-0.5
Intermediate gray layer of the superior colliculuscontraInG2
Deep mesencephalic nucleuscontraDpMe2
Pontine reticular nucleus caudal partcontraPNC1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF1
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL2
Parabrachial nucleus central lateral partcontraPBCeL3
Parabrachial nucleus dorsolateral partcontraPBDL3
Parabrachial nucleus external divison lateral partcontraPBeDL3
Ventral part of the parabrachial nucleus external divison lateral partcontraVPBeDL-0.5
Parabrachial nucleus external divison medial partcontraPBeDM3
Parabrachial nucleus medialcontraPBnMe2
Parabrachial nucleus superior lateralcontraPBSL1.5
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Subcoeruleus nucleuscontraSubC1
Nucleus of the solitary tractcontraSol3
Caudal ventrolateral medullacontraCVLM3
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Cuneate nucleuscontraCu3
Tuberomammillary nucleuscontraTuM2
Dorsomedial hypothalamic nucleuscontraDMHy2
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH4
Medial division of the hypothalamuscontraMdH4
Anterior hypothalamic areacontraAHA2
Posterior hypothalamic areacontraPHA2
Ventromedial hypothalamic nucleuscontraVMH2
Arcuate nucleuscontraArc2
Paraventricular hypothalamic nucleuscontraPa2
Periventricular hypothalamic nucleuscontraPe2
Suprachiasmatic nucleuscontraSCh2
Supraoptic nucleus [Supraoptic region]contraSO2
Mammillary bodycontraCMAM2
ThalamuscontraT3
Posterior thalamic nuclear groupcontraPo3
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Suprageniculate thalamic nucleuscontraSG2
Ventral posterior thalamic complexcontraVPT3
Ventrobasal complexcontraVB0.5
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Posterior intralaminar thalamic nucleuscontraPIL2
Posterior groupcontraPTG-0.5
Triangular portion of the posterior nuclear groupcontraPTGtri-0.5
Anterior pretectal nucleuscontraAPT1
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS10
Cervical segment 2contraCS20
Cervical segment 3contraCS30
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 7contraCS7-1
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Spinal cord layers T2contraSCLT22
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 5contraT50
Thoracal segment 6contraT60
Thoracal segment 7contraT70
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 11contraT110
Thoracal segment 12contraT120
Thoracal segment 13contraT130
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 4contraL40
Lumbar segment 5contraL50
Lumbar segment 6contraL60
Sacral segment 2contraSa20
Sacral segment 3contraSa30
Sacral segment 4contraSa40
Biceps femoris muscleipsiMuscBF1
Biceps femoris musclecontraMuscBF1

Input from

NameSideAbbr.WeightDetails
Middle meningeal arteryipsimime-0.5
Adventitia of the middle meningeal arteryipsimimea-0.5
Superficial temporal arteryipsista2
Superior dura sinusipsisds-0.5
Adventitia of the superior dura sinusipsiasds0
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Magnocellular reticular nucleusipsiNRMC-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Deep mesencephalic nucleus medial partipsiDpMeM-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Subnucleus reticularis dorsalis dorsal partipsiSRDD-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Trigeminal subnucleus caudalisipsi5SSC0
Trigeminal ganglionipsi5Gn3
Mandibular region of the trigeminal ganglionipsi5GnMa0.5
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nerveipsi5GnMaEm3
Maxillary region of the trigeminal ganglionipsi5GnV2-0.5
Caudal area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnCOM3
Ophthalmic region of the trigeminal ganglionipsi5GnOP1
Rostral area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnROM3
Superficial part of the trigeminal ganglionipsi5GnS3
Raphe magnus nucleusipsiRMg-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Lateral spinal nucleusipsiMESLn-0.5
Dorsal root ganglion C2ipsiDRGC21
Dorsal root ganglion C3ipsiDRGC30.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Adventitia of the superior dura sinuscontraasds0
Pedunculopontine tegmental nucleuscontraPPTg3
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Deep mesencephalic nucleus medial partcontraDpMeM-0.5
Cuneiforme nucleuscontraCnF-2
Parabrachial nucleuscontraPB-0.5
Spinal trigeminal nucleus caudal partcontraSp5C1
Paraventricular hypothalamic nucleuscontraPa1
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl-0.5
Primary somatosensory cortexcontraS10.5
Primary somatosensory cortex barrel fieldcontraS1BF1
Dorsal horn C1contraDHC11
C1 C2 anastomosis suboccipital nerve dorsal spinal nerve C2ipsic1c2a-2
Cutaneous branch of the mylohyoid nerveipsicmyhy3
Frontal nerveipsiFroN3
Greater occipital nerveipsiPNSgo1
Inferior alveolar nerveipsiialv-0.5
Auriculotemporal nerveipsi5V3Aute-0.5
Median nerveipsimen3
Mental nerveipsiment-0.5
Mylohyoid nerveipsimyhy3
Palatine nerveipsipala-0.5
Zygomaticofacial nerveipsizfn4
Mental nervecontrament-0.5
Inferior alveolar nervecontraialv-0.5
CorneaipsiOrgsCorn2
EyelidipsiOrgsEL-0.5
Intervibrissal furipsiiVFu-0.5
Vibrissal follicle complex A1ipsiVFCA10
Vibrissal follicle complex A4ipsiVFCA4-2
Auriculotemporal vibrissaipsiFVFCaut-0.5
Splenius capitis muscleipsiMuscSpCa-0.5
Intervibrissal furcontraiVFu-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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